RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 OR2G3Q8NGZ4 309 aa15.86■□□□□ 0.13
CLN3-250ENST00000636839 MISP3Q96FF7 219 aa15.86■□□□□ 0.13
CLN3-250ENST00000636839 ATP6V0E1O15342 81 aa15.85■□□□□ 0.13
CLN3-250ENST00000636839 OR5T1Q8NG75 326 aa15.85■□□□□ 0.13
CLN3-250ENST00000636839 CXorf58Q96LI9 332 aa15.85■□□□□ 0.13
CLN3-250ENST00000636839 LINC00527Q9UJ94 153 aa15.85■□□□□ 0.13
CLN3-250ENST00000636839 F11RQ9Y624 299 aaKnown RBP15.85■□□□□ 0.13
CLN3-250ENST00000636839 CUBNO60494 3623 aa15.85■□□□□ 0.13
CLN3-250ENST00000636839 SEC11BP0C7V7 166 aa15.85■□□□□ 0.13
CLN3-250ENST00000636839 CTRB1P17538 263 aa15.85■□□□□ 0.13
CLN3-250ENST00000636839 DLK1P80370 383 aa15.85■□□□□ 0.13
CLN3-250ENST00000636839 GAMTQ14353 236 aa15.85■□□□□ 0.13
CLN3-250ENST00000636839 C9orf152Q5JTZ5 239 aa15.85■□□□□ 0.13
CLN3-250ENST00000636839 CTRB2Q6GPI1 263 aa15.85■□□□□ 0.13
CLN3-250ENST00000636839 BTNL8Q6UX41 500 aa15.85■□□□□ 0.13
CLN3-250ENST00000636839 ZNF114Q8NC26 417 aa15.85■□□□□ 0.13
CLN3-250ENST00000636839 G3V318 75 aa15.84■□□□□ 0.13
CLN3-250ENST00000636839 OPRK1P41145 380 aa15.84■□□□□ 0.13
CLN3-250ENST00000636839 SUB1P53999 127 aaKnown RBP eCLIP15.84■□□□□ 0.13
CLN3-250ENST00000636839 CD69Q07108 199 aa15.84■□□□□ 0.13
CLN3-250ENST00000636839 AANATQ16613 207 aa15.84■□□□□ 0.13
CLN3-250ENST00000636839 Q6YL49 198 aa15.84■□□□□ 0.13
CLN3-250ENST00000636839 OR1P1Q8NH06 330 aa15.84■□□□□ 0.13
CLN3-250ENST00000636839 DUX5Q96PT3 197 aa15.84■□□□□ 0.13
CLN3-250ENST00000636839 VSIRQ9H7M9 311 aa15.84■□□□□ 0.13
CLN3-250ENST00000636839 WDR83OSQ9Y284 106 aa15.84■□□□□ 0.13
CLN3-250ENST00000636839 DEFA5Q01523 94 aa15.84■□□□□ 0.13
CLN3-250ENST00000636839 CLLU1Q5K131 121 aa15.84■□□□□ 0.13
CLN3-250ENST00000636839 IGKV1OR2-108A0A075B7D4 117 aa15.83■□□□□ 0.12
CLN3-250ENST00000636839 FGF16O43320 207 aa15.83■□□□□ 0.12
CLN3-250ENST00000636839 HOXA3O43365 443 aaPredicted RBP15.83■□□□□ 0.12
CLN3-250ENST00000636839 DEFA4P12838 97 aa15.83■□□□□ 0.12
CLN3-250ENST00000636839 ATP5IP56385 69 aaPredicted RBP15.83■□□□□ 0.12
CLN3-250ENST00000636839 ECSCRQ19T08 205 aa15.83■□□□□ 0.12
CLN3-250ENST00000636839 PVRIGQ6DKI7 326 aa15.83■□□□□ 0.12
CLN3-250ENST00000636839 MGST2Q99735 147 aa15.83■□□□□ 0.12
CLN3-250ENST00000636839 GGACTQ9BVM4 153 aa15.83■□□□□ 0.12
CLN3-250ENST00000636839 NPCDR1Q9BY65 106 aa15.83■□□□□ 0.12
CLN3-250ENST00000636839 ANK3Q12955 4377 aaKnown RBP15.83■□□□□ 0.12
CLN3-250ENST00000636839 RAB14P61106 215 aa15.82■□□□□ 0.12
CLN3-250ENST00000636839 AKR1C1Q04828 323 aa15.82■□□□□ 0.12
CLN3-250ENST00000636839 EIF5AL1Q6IS14 154 aaKnown RBP15.82■□□□□ 0.12
CLN3-250ENST00000636839 SLC16A13Q7RTY0 426 aa15.82■□□□□ 0.12
CLN3-250ENST00000636839 MRPL41Q8IXM3 137 aaKnown RBP15.82■□□□□ 0.12
CLN3-250ENST00000636839 SIGLECL1Q8N7X8 197 aa15.82■□□□□ 0.12
CLN3-250ENST00000636839 GNPNAT1Q96EK6 184 aaPredicted RBP15.82■□□□□ 0.12
CLN3-250ENST00000636839 ACY3Q96HD9 319 aa15.82■□□□□ 0.12
CLN3-250ENST00000636839 ZNF705EA8MWA4 302 aaPredicted RBP15.82■□□□□ 0.12
CLN3-250ENST00000636839 SULT1A2P50226 295 aa15.82■□□□□ 0.12
CLN3-250ENST00000636839 HSD17B13Q7Z5P4 300 aaPredicted RBP15.82■□□□□ 0.12
CLN3-250ENST00000636839 SGMS2Q8NHU3 365 aa15.82■□□□□ 0.12
CLN3-250ENST00000636839 RNF141Q8WVD5 230 aa15.82■□□□□ 0.12
CLN3-250ENST00000636839 SRSF8Q9BRL6 282 aaKnown RBP15.82■□□□□ 0.12
CLN3-250ENST00000636839 TMUB1Q9BVT8 246 aa15.82■□□□□ 0.12
CLN3-250ENST00000636839 PARD6GQ9BYG4 376 aaPredicted RBP15.82■□□□□ 0.12
CLN3-250ENST00000636839 NPVFQ9HCQ7 196 aa15.82■□□□□ 0.12
CLN3-250ENST00000636839 LSM4Q9Y4Z0 139 aaKnown RBP15.82■□□□□ 0.12
CLN3-250ENST00000636839 EIF3GO75821 320 aaKnown RBP eCLIP15.81■□□□□ 0.12
CLN3-250ENST00000636839 CRYGCP07315 174 aa15.81■□□□□ 0.12
CLN3-250ENST00000636839 SRP14P37108 136 aaKnown RBP15.81■□□□□ 0.12
CLN3-250ENST00000636839 ELLP55199 621 aaPredicted RBP15.81■□□□□ 0.12
CLN3-250ENST00000636839 RNASEH2CQ8TDP1 164 aaKnown RBP15.81■□□□□ 0.12
CLN3-250ENST00000636839 PITPNC1Q9UKF7 332 aa15.81■□□□□ 0.12
CLN3-250ENST00000636839 S4R3C0 116 aa15.81■□□□□ 0.12
CLN3-250ENST00000636839 BAHCC1Q9P281 2608 aa15.81■□□□□ 0.12
CLN3-250ENST00000636839 MT-CO2P00403 227 aa15.8■□□□□ 0.12
CLN3-250ENST00000636839 UNQ5815/PRO19632Q6UWF5 114 aa15.8■□□□□ 0.12
CLN3-250ENST00000636839 TTC9CQ8N5M4 171 aa15.8■□□□□ 0.12
CLN3-250ENST00000636839 NPIPB3Q92617 1050 aa15.8■□□□□ 0.12
CLN3-250ENST00000636839 FANCD2OSQ96PS1 177 aa15.8■□□□□ 0.12
CLN3-250ENST00000636839 ACSM6Q6P461 480 aa15.8■□□□□ 0.12
CLN3-250ENST00000636839 GSX1Q9H4S2 264 aaPredicted RBP15.8■□□□□ 0.12
CLN3-250ENST00000636839 NPIPB5A8MRT5 1133 aa15.79■□□□□ 0.12
CLN3-250ENST00000636839 SCAF4O95104 1147 aaKnown RBP15.79■□□□□ 0.12
CLN3-250ENST00000636839 LY6G6DO95868 133 aa15.79■□□□□ 0.12
CLN3-250ENST00000636839 GPX4P36969 197 aaPredicted RBP15.79■□□□□ 0.12
CLN3-250ENST00000636839 Q71RC1 249 aaPredicted RBP15.79■□□□□ 0.12
CLN3-250ENST00000636839 NOL4LQ96MY1 436 aaPredicted RBP15.79■□□□□ 0.12
CLN3-250ENST00000636839 PRDM13Q9H4Q3 707 aa15.79■□□□□ 0.12
CLN3-250ENST00000636839 I3L2K1 104 aa15.78■□□□□ 0.12
CLN3-250ENST00000636839 GATA2P23769 480 aaPredicted RBP15.78■□□□□ 0.12
CLN3-250ENST00000636839 GCSAMLQ5JQS6 135 aa15.78■□□□□ 0.12
CLN3-250ENST00000636839 MIC13Q5XKP0 118 aa15.78■□□□□ 0.12
CLN3-250ENST00000636839 TEPPQ6URK8 271 aa15.78■□□□□ 0.12
CLN3-250ENST00000636839 MTORP42345 2549 aa15.78■□□□□ 0.12
CLN3-250ENST00000636839 AGPAT2O15120 278 aa15.78■□□□□ 0.12
CLN3-250ENST00000636839 SOX15O60248 233 aa15.78■□□□□ 0.12
CLN3-250ENST00000636839 RND2P52198 227 aa15.78■□□□□ 0.12
CLN3-250ENST00000636839 TMEM144Q7Z5S9 345 aa15.78■□□□□ 0.12
CLN3-250ENST00000636839 CENPVQ7Z7K6 275 aaPredicted RBP15.78■□□□□ 0.12
CLN3-250ENST00000636839 FAM213BQ8TBF2 198 aa15.78■□□□□ 0.12
CLN3-250ENST00000636839 CACNG8Q8WXS5 425 aa15.78■□□□□ 0.12
CLN3-250ENST00000636839 PSMG3Q9BT73 122 aaPredicted RBP15.78■□□□□ 0.12
CLN3-250ENST00000636839 GGTLC1Q9BX51 225 aa15.78■□□□□ 0.12
CLN3-250ENST00000636839 RPRMQ9NS64 109 aa15.78■□□□□ 0.12
CLN3-250ENST00000636839 VPREB3Q9UKI3 123 aa15.78■□□□□ 0.12
CLN3-250ENST00000636839 K7EIM0 57 aa15.77■□□□□ 0.12
CLN3-250ENST00000636839 CAMLGP49069 296 aa15.77■□□□□ 0.12
CLN3-250ENST00000636839 TMEM95Q3KNT9 176 aa15.77■□□□□ 0.12
CLN3-250ENST00000636839 Q6ZRG5 221 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms