RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 LINC00205P59089 165 aa9.44□□□□□ -0.9
VRK3-223ENST00000601341 HIST1H2BCP62807 126 aa9.44□□□□□ -0.9
VRK3-223ENST00000601341 PRB3Q04118 309 aaPredicted RBP9.44□□□□□ -0.9
VRK3-223ENST00000601341 LOXL1Q08397 574 aaPredicted RBP9.44□□□□□ -0.9
VRK3-223ENST00000601341 HIST2H2BEQ16778 126 aa9.44□□□□□ -0.9
VRK3-223ENST00000601341 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.44□□□□□ -0.9
VRK3-223ENST00000601341 NANPQ8TBE9 248 aa9.44□□□□□ -0.9
VRK3-223ENST00000601341 HIST1H2BHQ93079 126 aa9.44□□□□□ -0.9
VRK3-223ENST00000601341 ST6GALNAC6Q969X2 333 aa9.44□□□□□ -0.9
VRK3-223ENST00000601341 C1orf159Q96HA4 380 aa9.44□□□□□ -0.9
VRK3-223ENST00000601341 IMMP2LQ96T52 175 aa9.44□□□□□ -0.9
VRK3-223ENST00000601341 HIST1H2BNQ99877 126 aa9.44□□□□□ -0.9
VRK3-223ENST00000601341 HIST1H2BMQ99879 126 aa9.44□□□□□ -0.9
VRK3-223ENST00000601341 PCGF1Q9BSM1 259 aa9.44□□□□□ -0.9
VRK3-223ENST00000601341 SRD5A3Q9H8P0 318 aa9.44□□□□□ -0.9
VRK3-223ENST00000601341 HEYLQ9NQ87 328 aaPredicted RBP9.44□□□□□ -0.9
VRK3-223ENST00000601341 GAR1Q9NY12 217 aaKnown RBP9.44□□□□□ -0.9
VRK3-223ENST00000601341 TCF19Q9Y242 345 aa9.44□□□□□ -0.9
VRK3-223ENST00000601341 LSM4Q9Y4Z0 139 aaKnown RBP9.44□□□□□ -0.9
VRK3-223ENST00000601341 URGCP-MRPS24S4R325 110 aa9.44□□□□□ -0.9
VRK3-223ENST00000601341 ARL2-SNX15V9GYD0 113 aa9.44□□□□□ -0.9
VRK3-223ENST00000601341 NBPF19A0A087WUL8 3843 aa9.43□□□□□ -0.9
VRK3-223ENST00000601341 BUB1B-PAK6H3BSN5 160 aa9.43□□□□□ -0.9
VRK3-223ENST00000601341 PHOX2AO14813 284 aa9.43□□□□□ -0.9
VRK3-223ENST00000601341 IL6RP08887 468 aaPredicted RBP9.43□□□□□ -0.9
VRK3-223ENST00000601341 CT45A6P0DMU7 189 aa9.43□□□□□ -0.9
VRK3-223ENST00000601341 CT45A5P0DMU8 189 aa9.43□□□□□ -0.9
VRK3-223ENST00000601341 CT45A7P0DMV0 189 aa9.43□□□□□ -0.9
VRK3-223ENST00000601341 SRP14P37108 136 aaKnown RBP9.43□□□□□ -0.9
VRK3-223ENST00000601341 HSPE1P61604 102 aaKnown RBP9.43□□□□□ -0.9
VRK3-223ENST00000601341 RPL23P62829 140 aaKnown RBP9.43□□□□□ -0.9
VRK3-223ENST00000601341 PAX8Q06710 450 aa9.43□□□□□ -0.9
VRK3-223ENST00000601341 RAB31Q13636 194 aa9.43□□□□□ -0.9
VRK3-223ENST00000601341 SSX2Q16385 188 aa9.43□□□□□ -0.9
VRK3-223ENST00000601341 TREML4Q6UXN2 200 aa9.43□□□□□ -0.9
VRK3-223ENST00000601341 TGIF2LXQ8IUE1 241 aa9.43□□□□□ -0.9
VRK3-223ENST00000601341 OR4P4Q8NGL7 312 aa9.43□□□□□ -0.9
VRK3-223ENST00000601341 RHOVQ96L33 236 aa9.43□□□□□ -0.9
VRK3-223ENST00000601341 PRNDQ9UKY0 176 aa9.43□□□□□ -0.9
VRK3-223ENST00000601341 A0A1W2PPV4 95 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 RNF223E7ERA6 249 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 PPP1R2P9O14990 202 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 CXorf1O96002 111 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 S100A2P29034 98 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 HCP5Q6MZN7 132 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 ZNF383Q8NA42 475 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 OR51G1Q8NGK1 321 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 OR4F5Q8NH21 305 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 Q96MF0 132 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 OR5B12Q96R08 314 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 OR4F4Q96R69 305 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 FKBP11Q9NYL4 201 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 HECTD1Q9ULT8 2610 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 ARHGAP32A7KAX9 2087 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 TRAV20A0A0B4J274 112 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 ODF3BA8MYP8 253 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 C11orf94C9JXX5 98 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 H7BYZ3 331 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 APOA2P02652 100 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 TRGC2P03986 189 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 TYMSP04818 313 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 STAG3L2P0CL84 134 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 STAG3L3P0CL85 134 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 HOXB4P17483 251 aaPredicted RBP9.42□□□□□ -0.9
VRK3-223ENST00000601341 GATA3P23771 443 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 HTR1DP28221 377 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 CEACAM3P40198 252 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 RPL29P47914 159 aaKnown RBP9.42□□□□□ -0.9
VRK3-223ENST00000601341 REG1BP48304 166 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 FAM3BP58499 235 aaPredicted RBP9.42□□□□□ -0.9
VRK3-223ENST00000601341 KLRD1Q13241 179 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 ADIRFQ15847 76 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 RTL8BQ17RB0 113 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 LINC01356Q8N9X3 169 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 OR5AN1Q8NGI8 311 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 RPEQ96AT9 228 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 TBX15Q96SF7 602 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 GGTLC1Q9BX51 225 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 MRPL20Q9BYC9 149 aaKnown RBP9.42□□□□□ -0.9
VRK3-223ENST00000601341 NIT2Q9NQR4 276 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 DPM3Q9P2X0 92 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 PITPNC1Q9UKF7 332 aa9.42□□□□□ -0.9
VRK3-223ENST00000601341 MAP1AP78559 2803 aaPredicted RBP9.41□□□□□ -0.9
VRK3-223ENST00000601341 VPS13CQ709C8 3753 aa9.41□□□□□ -0.9
VRK3-223ENST00000601341 PAGE4O60829 102 aa9.41□□□□□ -0.9
VRK3-223ENST00000601341 FABP1P07148 127 aa9.41□□□□□ -0.9
VRK3-223ENST00000601341 NPY1RP25929 384 aa9.41□□□□□ -0.9
VRK3-223ENST00000601341 UBE2E1P51965 193 aa9.41□□□□□ -0.9
VRK3-223ENST00000601341 DIAPH2-AS1Q14236 149 aa9.41□□□□□ -0.9
VRK3-223ENST00000601341 HNF4GQ14541 408 aa9.41□□□□□ -0.9
VRK3-223ENST00000601341 COA6Q5JTJ3 125 aaKnown RBP9.41□□□□□ -0.9
VRK3-223ENST00000601341 OR4A47Q6IF82 309 aa9.41□□□□□ -0.9
VRK3-223ENST00000601341 TEPPQ6URK8 271 aa9.41□□□□□ -0.9
VRK3-223ENST00000601341 KRTAP1-3Q8IUG1 177 aa9.41□□□□□ -0.9
VRK3-223ENST00000601341 SLC24A4Q8NFF2 622 aa9.41□□□□□ -0.9
VRK3-223ENST00000601341 FOXC2Q99958 501 aa9.41□□□□□ -0.9
VRK3-223ENST00000601341 NABP2Q9BQ15 211 aa9.41□□□□□ -0.9
VRK3-223ENST00000601341 C19orf24Q9BVV8 132 aa9.41□□□□□ -0.9
VRK3-223ENST00000601341 ENY2Q9NPA8 101 aa9.41□□□□□ -0.9
VRK3-223ENST00000601341 INS-IGF2F8WCM5 200 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms