RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 PRR25Q96S07 402 aa11.6□□□□□ -0.55
LIG1-219ENST00000600055 SHPKQ9UHJ6 478 aa11.6□□□□□ -0.55
LIG1-219ENST00000600055 IGHV3-35A0A0C4DH35 117 aa11.59□□□□□ -0.55
LIG1-219ENST00000600055 OR2T8A6NH00 312 aa11.59□□□□□ -0.55
LIG1-219ENST00000600055 F8W735 103 aaPredicted RBP11.59□□□□□ -0.55
LIG1-219ENST00000600055 INS-IGF2F8WCM5 200 aa11.59□□□□□ -0.55
LIG1-219ENST00000600055 I3L2K1 104 aa11.59□□□□□ -0.55
LIG1-219ENST00000600055 IGHV3-48P01763 117 aa11.59□□□□□ -0.55
LIG1-219ENST00000600055 CSN3P07498 182 aa11.59□□□□□ -0.55
LIG1-219ENST00000600055 SULT1A3P0DMM9 295 aa11.59□□□□□ -0.55
LIG1-219ENST00000600055 SULT1A4P0DMN0 295 aa11.59□□□□□ -0.55
LIG1-219ENST00000600055 EDN2P20800 178 aa11.59□□□□□ -0.55
LIG1-219ENST00000600055 SRPXP78539 464 aa11.59□□□□□ -0.55
LIG1-219ENST00000600055 DCTN2Q13561 401 aaKnown RBP11.59□□□□□ -0.55
LIG1-219ENST00000600055 OR52E5Q8NH55 327 aa11.59□□□□□ -0.55
LIG1-219ENST00000600055 ENY2Q9NPA8 101 aa11.59□□□□□ -0.55
LIG1-219ENST00000600055 C21orf62Q9NYP8 219 aa11.59□□□□□ -0.55
LIG1-219ENST00000600055 PIGBOS1A0A0B4J2F0 54 aa11.58□□□□□ -0.56
LIG1-219ENST00000600055 FAM240BA0A1B0GVZ2 78 aa11.58□□□□□ -0.56
LIG1-219ENST00000600055 MT-CO2P00403 227 aa11.58□□□□□ -0.56
LIG1-219ENST00000600055 RNASE2P10153 161 aaKnown RBP11.58□□□□□ -0.56
LIG1-219ENST00000600055 SPNP16150 400 aa11.58□□□□□ -0.56
LIG1-219ENST00000600055 ANXA7P20073 488 aaKnown RBP11.58□□□□□ -0.56
LIG1-219ENST00000600055 SNCAP37840 140 aa11.58□□□□□ -0.56
LIG1-219ENST00000600055 ADAMTSL5Q6ZMM2 481 aa11.58□□□□□ -0.56
LIG1-219ENST00000600055 GPHB5Q86YW7 130 aa11.58□□□□□ -0.56
LIG1-219ENST00000600055 PINX1Q96BK5 328 aaKnown RBP11.58□□□□□ -0.56
LIG1-219ENST00000600055 C9orf170A2RU37 121 aa11.57□□□□□ -0.56
LIG1-219ENST00000600055 CEBPZOSA8MTT3 80 aa11.57□□□□□ -0.56
LIG1-219ENST00000600055 TGOLN2O43493 480 aa11.57□□□□□ -0.56
LIG1-219ENST00000600055 LY86O95711 162 aa11.57□□□□□ -0.56
LIG1-219ENST00000600055 IGLV1-51P01701 117 aa11.57□□□□□ -0.56
LIG1-219ENST00000600055 SMCO1Q147U7 214 aa11.57□□□□□ -0.56
LIG1-219ENST00000600055 Q56UQ5 140 aa11.57□□□□□ -0.56
LIG1-219ENST00000600055 DEFB121Q5J5C9 76 aa11.57□□□□□ -0.56
LIG1-219ENST00000600055 PLET1Q6UQ28 207 aa11.57□□□□□ -0.56
LIG1-219ENST00000600055 LRTM2Q8N967 370 aa11.57□□□□□ -0.56
LIG1-219ENST00000600055 UBAC2Q8NBM4 344 aa11.57□□□□□ -0.56
LIG1-219ENST00000600055 ENKURQ8TC29 256 aa11.57□□□□□ -0.56
LIG1-219ENST00000600055 CHRDL1Q9BU40 450 aa11.57□□□□□ -0.56
LIG1-219ENST00000600055 ZMAT5Q9UDW3 170 aaKnown RBP11.57□□□□□ -0.56
LIG1-219ENST00000600055 ZNF256Q9Y2P7 627 aaPredicted RBP11.57□□□□□ -0.56
LIG1-219ENST00000600055 PRKDCP78527 4128 aaKnown RBP11.56□□□□□ -0.56
LIG1-219ENST00000600055 DUXBA0A1W2PPF3 345 aa11.56□□□□□ -0.56
LIG1-219ENST00000600055 ZNF320A2RRD8 509 aa11.56□□□□□ -0.56
LIG1-219ENST00000600055 LGALS9O00182 355 aa11.56□□□□□ -0.56
LIG1-219ENST00000600055 HOXB5P09067 269 aa11.56□□□□□ -0.56
LIG1-219ENST00000600055 OR4E1P0C645 316 aa11.56□□□□□ -0.56
LIG1-219ENST00000600055 UBE2MP61081 183 aaKnown RBP11.56□□□□□ -0.56
LIG1-219ENST00000600055 PVRIGQ6DKI7 326 aa11.56□□□□□ -0.56
LIG1-219ENST00000600055 UNQ9165/PRO28630Q6UXU0 137 aa11.56□□□□□ -0.56
LIG1-219ENST00000600055 HEYLQ9NQ87 328 aaPredicted RBP11.56□□□□□ -0.56
LIG1-219ENST00000600055 PEMTQ9UBM1 199 aa11.56□□□□□ -0.56
LIG1-219ENST00000600055 TBC1D24Q9ULP9 559 aa11.56□□□□□ -0.56
LIG1-219ENST00000600055 SELENOKQ9Y6D0 94 aa11.56□□□□□ -0.56
LIG1-219ENST00000600055 A0A1B0GU03 582 aa11.55□□□□□ -0.56
LIG1-219ENST00000600055 C2orf70A6NJV1 201 aa11.55□□□□□ -0.56
LIG1-219ENST00000600055 ADMP35318 185 aa11.55□□□□□ -0.56
LIG1-219ENST00000600055 SUB1P53999 127 aaKnown RBP eCLIP11.55□□□□□ -0.56
LIG1-219ENST00000600055 MFAP4P55083 255 aa11.55□□□□□ -0.56
LIG1-219ENST00000600055 TNFRSF9Q07011 255 aa11.55□□□□□ -0.56
LIG1-219ENST00000600055 DHRS2Q13268 280 aa11.55□□□□□ -0.56
LIG1-219ENST00000600055 MLANAQ16655 118 aa11.55□□□□□ -0.56
LIG1-219ENST00000600055 BSXQ3C1V8 233 aa11.55□□□□□ -0.56
LIG1-219ENST00000600055 FAM106AQ4KMX7 169 aa11.55□□□□□ -0.56
LIG1-219ENST00000600055 LYG2Q86SG7 212 aa11.55□□□□□ -0.56
LIG1-219ENST00000600055 OR1S1Q8NH92 325 aa11.55□□□□□ -0.56
LIG1-219ENST00000600055 CACNG8Q8WXS5 425 aa11.55□□□□□ -0.56
LIG1-219ENST00000600055 BSCL2Q96G97 398 aaPredicted RBP11.55□□□□□ -0.56
LIG1-219ENST00000600055 C20orf85Q9H1P6 137 aa11.55□□□□□ -0.56
LIG1-219ENST00000600055 RBKSQ9H477 322 aa11.55□□□□□ -0.56
LIG1-219ENST00000600055 HSPB7Q9UBY9 170 aa11.55□□□□□ -0.56
LIG1-219ENST00000600055 TRAV6A0A075B6T7 132 aa11.54□□□□□ -0.56
LIG1-219ENST00000600055 IZUMO1RA6ND01 250 aa11.54□□□□□ -0.56
LIG1-219ENST00000600055 PITX3O75364 302 aa11.54□□□□□ -0.56
LIG1-219ENST00000600055 ADAP1O75689 374 aa11.54□□□□□ -0.56
LIG1-219ENST00000600055 TCRBP04435 133 aa11.54□□□□□ -0.56
LIG1-219ENST00000600055 CTSGP08311 255 aa11.54□□□□□ -0.56
LIG1-219ENST00000600055 FOLR2P14207 255 aa11.54□□□□□ -0.56
LIG1-219ENST00000600055 GP9P14770 177 aa11.54□□□□□ -0.56
LIG1-219ENST00000600055 IFITM3Q01628 133 aa11.54□□□□□ -0.56
LIG1-219ENST00000600055 C4orf46Q504U0 113 aa11.54□□□□□ -0.56
LIG1-219ENST00000600055 TM4SF20Q53R12 229 aa11.54□□□□□ -0.56
LIG1-219ENST00000600055 GGNBP1Q5YKI7 109 aa11.54□□□□□ -0.56
LIG1-219ENST00000600055 OR52B4Q8NGK2 314 aa11.54□□□□□ -0.56
LIG1-219ENST00000600055 TMEM170AQ8WVE7 144 aa11.54□□□□□ -0.56
LIG1-219ENST00000600055 ZNF414Q96IQ9 312 aa11.54□□□□□ -0.56
LIG1-219ENST00000600055 ZNF436Q9C0F3 470 aaPredicted RBP11.54□□□□□ -0.56
LIG1-219ENST00000600055 FNDC4Q9H6D8 234 aaPredicted RBP11.54□□□□□ -0.56
LIG1-219ENST00000600055 SIGLEC8Q9NYZ4 499 aa11.54□□□□□ -0.56
LIG1-219ENST00000600055 MRPL36Q9P0J6 103 aaKnown RBP11.54□□□□□ -0.56
LIG1-219ENST00000600055 IGHV3OR16-8A0A075B7F1 116 aa11.53□□□□□ -0.56
LIG1-219ENST00000600055 TMEM213A2RRL7 107 aa11.53□□□□□ -0.56
LIG1-219ENST00000600055 HTR2BP41595 481 aa11.53□□□□□ -0.56
LIG1-219ENST00000600055 SPSB3Q6PJ21 355 aa11.53□□□□□ -0.56
LIG1-219ENST00000600055 SLC24A4Q8NFF2 622 aa11.53□□□□□ -0.56
LIG1-219ENST00000600055 ATP6V0BQ99437 205 aa11.53□□□□□ -0.56
LIG1-219ENST00000600055 HIPK2Q9H2X6 1198 aa11.53□□□□□ -0.56
LIG1-219ENST00000600055 TMED3Q9Y3Q3 217 aa11.53□□□□□ -0.56
LIG1-219ENST00000600055 MPTX1A8MV57 137 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms