RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 ATP23Q9Y6H3 246 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 LY96Q9Y6Y9 160 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 PLCE1Q9P212 2302 aa3.41□□□□□ -1.86
LIG3-211ENST00000588713 IGKV1D-13A0A0B4J2D9 117 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 A0A0U1RQK1 487 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 A0A1B0GUS0 222 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 ZNF320A2RRD8 509 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 DPRXA6NFQ7 191 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 NKX6-3A6NJ46 265 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 SHISA9B4DS77 424 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 C9JCJ5 164 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 SIRPB1O00241 398 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 SYNGR3O43761 229 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 ZNF253O75346 499 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 MPDU1O75352 247 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 PGLYRP1O75594 196 aaPredicted RBP3.4□□□□□ -1.87
LIG3-211ENST00000588713 CBR3O75828 277 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 SERF1AO75920 110 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 ZFAND5O76080 213 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 OR7C1O76099 320 aaPredicted RBP3.4□□□□□ -1.87
LIG3-211ENST00000588713 MSMBP08118 114 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 OR5G3P0C626 314 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 IGKV1-13P0DP09 117 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 IAPPP10997 89 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 CRISP2P16562 243 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 WNT5AP41221 380 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 PTGDSP41222 190 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 LHX2P50458 406 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 CLDN17P56750 224 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 RHOBP62745 196 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 SUMO1P63165 101 aaKnown RBP3.4□□□□□ -1.87
LIG3-211ENST00000588713 ARL16Q0P5N6 197 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 MLANAQ16655 118 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 SPATA45Q537H7 98 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 OR10J3Q5JRS4 329 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 FAM27BQ5VT28 67 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 CARD17Q5XLA6 110 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 YRDCQ86U90 279 aaKnown RBP3.4□□□□□ -1.87
LIG3-211ENST00000588713 TMEM256Q8N2U0 113 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 PNKDQ8N490 385 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 RPP25LQ8N5L8 163 aaKnown RBP3.4□□□□□ -1.87
LIG3-211ENST00000588713 TCTEX1D1Q8N7M0 179 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 Q8N976 141 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 ZNF738Q8NE65 137 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 OR10G9Q8NGN4 311 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 OR10G7Q8NGN6 311 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 OR1F12Q8NHA8 337 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 SGCZQ96LD1 299 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 CIB3Q96Q77 187 aaPredicted RBP3.4□□□□□ -1.87
LIG3-211ENST00000588713 OR4C12Q96R67 309 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 HSPB9Q9BQS6 159 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 ALKBH7Q9BT30 221 aaPredicted RBP3.4□□□□□ -1.87
LIG3-211ENST00000588713 SAMD10Q9BYL1 202 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 METTL7AQ9H8H3 244 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 NGBQ9NPG2 151 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 CCL28Q9NRJ3 127 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 TNFRSF19Q9NS68 423 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 IL36BQ9NZH7 164 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 HSPB7Q9UBY9 170 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 RPUSD1Q9UJJ7 312 aaKnown RBP3.4□□□□□ -1.87
LIG3-211ENST00000588713 TP53TG3Q9ULZ0 132 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 LAMTOR2Q9Y2Q5 125 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 MRPS16Q9Y3D3 137 aaKnown RBP3.4□□□□□ -1.87
LIG3-211ENST00000588713 OR2W1Q9Y3N9 320 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 COX11Q9Y6N1 276 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 U3KQE9 123 aa3.4□□□□□ -1.87
LIG3-211ENST00000588713 TRAV30A0A087WSZ9 112 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 IGHV2-26A0A0B4J1V2 119 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 IGHV2-70DA0A0C4DH43 119 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 IGKV1-6A0A0C4DH72 117 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 WI2-2373I1.2A0A1W2PRP0 233 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 CLPSL1A2RUU4 121 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 DIRC3C9JPN6 131 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 E7EQL1 145 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.39□□□□□ -1.87
LIG3-211ENST00000588713 IFNL4K9M1U5 179 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 SLC33A1O00400 549 aaPredicted RBP3.39□□□□□ -1.87
LIG3-211ENST00000588713 EFNA2O43921 213 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 PAGE4O60829 102 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 HYPMO75409 117 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 S1PR2O95136 353 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 NXPH3O95157 252 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 NDUFB8O95169 186 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 ZNF205O95201 554 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 CGAP01215 116 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 IGKV1-39P01597 117 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 IGKV1-5P01602 117 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 HLA-DQA1P01909 254 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 IGKV1D-39P04432 117 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 OR10J4P0C629 311 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 P0C879 139 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 IGLC2P0DOY2 106 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 IGLC3P0DOY3 106 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 PSG2P11465 335 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 KITLGP21583 273 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 TNFSF4P23510 183 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 PTTG1IPP53801 180 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 PCBD1P61457 104 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 GNB1P62873 340 aa3.39□□□□□ -1.87
LIG3-211ENST00000588713 TGFBR3Q03167 851 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms