RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 SMIM10L2AP0DMW4 78 aa1.28□□□□□ -2.2
SMCHD1-209ENST00000583441 SMIM10L2BP0DMW5 78 aa1.28□□□□□ -2.2
SMCHD1-209ENST00000583441 RANP62826 216 aaKnown RBP1.28□□□□□ -2.2
SMCHD1-209ENST00000583441 FADDQ13158 208 aa1.28□□□□□ -2.2
SMCHD1-209ENST00000583441 TMEM97Q5BJF2 176 aa1.28□□□□□ -2.2
SMCHD1-209ENST00000583441 DPPA3Q6W0C5 159 aa1.28□□□□□ -2.2
SMCHD1-209ENST00000583441 MIR17HGQ75NE6 70 aa1.28□□□□□ -2.2
SMCHD1-209ENST00000583441 CT55Q8WUE5 264 aa1.28□□□□□ -2.2
SMCHD1-209ENST00000583441 H1FXQ92522 213 aaKnown RBP1.28□□□□□ -2.2
SMCHD1-209ENST00000583441 TMEM147Q9BVK8 224 aa1.28□□□□□ -2.2
SMCHD1-209ENST00000583441 MIXL1Q9H2W2 232 aa1.28□□□□□ -2.2
SMCHD1-209ENST00000583441 C11orf68Q9H3H3 251 aaKnown RBP1.28□□□□□ -2.2
SMCHD1-209ENST00000583441 SLC39A9Q9NUM3 307 aa1.28□□□□□ -2.2
SMCHD1-209ENST00000583441 FBXO5Q9UKT4 447 aa1.28□□□□□ -2.2
SMCHD1-209ENST00000583441 TONSLQ96HA7 1378 aa1.28□□□□□ -2.2
SMCHD1-209ENST00000583441 CUL9Q8IWT3 2517 aa1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 WDR90Q96KV7 1748 aa1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 IGKV1D-43A0A0B4J1Z2 117 aa1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 SMIM9A6NGZ8 99 aa1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 OR5F1O95221 314 aa1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 CNIH1O95406 144 aa1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 TCL1BO95988 128 aa1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 HAND1O96004 215 aa1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 ANGP03950 147 aaKnown RBP1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 UBBP0CG47 229 aa1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 COX6A1P12074 109 aa1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 IL9P15248 144 aa1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 G6PCP35575 357 aa1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 AP3S2P59780 193 aa1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 RPS20P60866 119 aaKnown RBP1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 CDK10Q15131 360 aa1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 KISS1Q15726 138 aa1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 LCN15Q6UWW0 184 aa1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 UNQ6190/PRO20217Q6UXQ8 127 aa1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 Q6ZSA8 131 aa1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 TRAPPC6BQ86SZ2 158 aa1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 BPIFA4PQ86YQ2 179 aa1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 KRT222Q8N1A0 295 aa1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 GDPD1Q8N9F7 314 aa1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 ZNF439Q8NDP4 499 aa1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 OR4D11Q8NGI4 311 aa1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 C2orf50Q96LR7 162 aa1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 GLTPQ9NZD2 209 aa1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 SOX21Q9Y651 276 aaPredicted RBP1.27□□□□□ -2.21
SMCHD1-209ENST00000583441 KIF24Q5T7B8 1368 aa1.26□□□□□ -2.21
SMCHD1-209ENST00000583441 SORL1Q92673 2214 aa1.26□□□□□ -2.21
SMCHD1-209ENST00000583441 TTC21AQ8NDW8 1320 aa1.26□□□□□ -2.21
SMCHD1-209ENST00000583441 IGKV3D-7A0A0C4DH55 119 aa1.26□□□□□ -2.21
SMCHD1-209ENST00000583441 IGKV3OR2-268A0A0C4DH90 116 aa1.26□□□□□ -2.21
SMCHD1-209ENST00000583441 hADV38S2A0JD32 116 aa1.26□□□□□ -2.21
SMCHD1-209ENST00000583441 J3QRK9 145 aa1.26□□□□□ -2.21
SMCHD1-209ENST00000583441 CLPSP04118 112 aa1.26□□□□□ -2.21
SMCHD1-209ENST00000583441 SHBGP04278 402 aa1.26□□□□□ -2.21
SMCHD1-209ENST00000583441 OOSP2Q86WS3 158 aa1.26□□□□□ -2.21
SMCHD1-209ENST00000583441 TERB2Q8NHR7 220 aa1.26□□□□□ -2.21
SMCHD1-209ENST00000583441 DNAJC9Q8WXX5 260 aa1.26□□□□□ -2.21
SMCHD1-209ENST00000583441 BTF3L4Q96K17 158 aa1.26□□□□□ -2.21
SMCHD1-209ENST00000583441 PRAP1Q96NZ9 151 aa1.26□□□□□ -2.21
SMCHD1-209ENST00000583441 SERPINI1Q99574 410 aa1.26□□□□□ -2.21
SMCHD1-209ENST00000583441 ERGIC3Q9Y282 383 aa1.26□□□□□ -2.21
SMCHD1-209ENST00000583441 KIAA2026Q5HYC2 2103 aa1.25□□□□□ -2.21
SMCHD1-209ENST00000583441 IGKV2-40A0A087WW87 121 aaPredicted RBP1.25□□□□□ -2.21
SMCHD1-209ENST00000583441 FAM236DA0A1B0GTK5 79 aa1.25□□□□□ -2.21
SMCHD1-209ENST00000583441 TMEM210A6NLX4 147 aa1.25□□□□□ -2.21
SMCHD1-209ENST00000583441 PDE6DO43924 150 aa1.25□□□□□ -2.21
SMCHD1-209ENST00000583441 FADS1O60427 444 aa1.25□□□□□ -2.21
SMCHD1-209ENST00000583441 IGKV2D-40P01614 121 aaPredicted RBP1.25□□□□□ -2.21
SMCHD1-209ENST00000583441 SERPINE1P05121 402 aa1.25□□□□□ -2.21
SMCHD1-209ENST00000583441 CTXN2P0C2S0 81 aa1.25□□□□□ -2.21
SMCHD1-209ENST00000583441 FAM236CP0DP71 79 aa1.25□□□□□ -2.21
SMCHD1-209ENST00000583441 PPIBP23284 216 aaKnown RBP1.25□□□□□ -2.21
SMCHD1-209ENST00000583441 S100A4P26447 101 aaKnown RBP1.25□□□□□ -2.21
SMCHD1-209ENST00000583441 YPEL3P61236 119 aaPredicted RBP1.25□□□□□ -2.21
SMCHD1-209ENST00000583441 RUNX1Q01196 453 aa1.25□□□□□ -2.21
SMCHD1-209ENST00000583441 SPANXN5Q5MJ07 72 aa1.25□□□□□ -2.21
SMCHD1-209ENST00000583441 ZNF826PQ6ZT77 177 aa1.25□□□□□ -2.21
SMCHD1-209ENST00000583441 CLVS1Q8IUQ0 354 aaPredicted RBP1.25□□□□□ -2.21
SMCHD1-209ENST00000583441 HIST3H2BBQ8N257 126 aa1.25□□□□□ -2.21
SMCHD1-209ENST00000583441 C12orf29Q8N999 325 aa1.25□□□□□ -2.21
SMCHD1-209ENST00000583441 OR4E2Q8NGC2 313 aa1.25□□□□□ -2.21
SMCHD1-209ENST00000583441 ADAT1Q9BUB4 502 aaKnown RBP1.25□□□□□ -2.21
SMCHD1-209ENST00000583441 TLNRD1Q9H1K6 362 aa1.25□□□□□ -2.21
SMCHD1-209ENST00000583441 OR5AC2Q9NZP5 309 aa1.25□□□□□ -2.21
SMCHD1-209ENST00000583441 TP73-AS1Q9UF72 201 aa1.25□□□□□ -2.21
SMCHD1-209ENST00000583441 PRELID3BQ9Y3B1 194 aa1.25□□□□□ -2.21
SMCHD1-209ENST00000583441 CR1P17927 2039 aa1.25□□□□□ -2.21
SMCHD1-209ENST00000583441 RIC1Q4ADV7 1423 aa1.24□□□□□ -2.21
SMCHD1-209ENST00000583441 OR2B3O76000 313 aa1.24□□□□□ -2.21
SMCHD1-209ENST00000583441 C8GP07360 202 aa1.24□□□□□ -2.21
SMCHD1-209ENST00000583441 CASP1P29466 404 aa1.24□□□□□ -2.21
SMCHD1-209ENST00000583441 MRPS25P82663 173 aaKnown RBP1.24□□□□□ -2.21
SMCHD1-209ENST00000583441 REEP5Q00765 189 aa1.24□□□□□ -2.21
SMCHD1-209ENST00000583441 ZNF846Q147U1 533 aa1.24□□□□□ -2.21
SMCHD1-209ENST00000583441 C12orf74Q32Q52 190 aa1.24□□□□□ -2.21
SMCHD1-209ENST00000583441 KHDC3LQ587J8 217 aa1.24□□□□□ -2.21
SMCHD1-209ENST00000583441 PHF13Q86YI8 300 aaPredicted RBP1.24□□□□□ -2.21
SMCHD1-209ENST00000583441 NMNAT1Q9HAN9 279 aaPredicted RBP1.24□□□□□ -2.21
SMCHD1-209ENST00000583441 NHP2Q9NX24 153 aaKnown RBP1.24□□□□□ -2.21
SMCHD1-209ENST00000583441 CYSLTR1Q9Y271 337 aa1.24□□□□□ -2.21
SMCHD1-209ENST00000583441 MUC6Q6W4X9 2439 aa1.24□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms