RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 RNASE2P10153 161 aaKnown RBP15.23■□□□□ 0.03
SS18-218ENST00000581021 FOLR2P14207 255 aa15.23■□□□□ 0.03
SS18-218ENST00000581021 ANKRD55Q3KP44 614 aa15.23■□□□□ 0.03
SS18-218ENST00000581021 OR1L6Q8NGR2 347 aa15.23■□□□□ 0.03
SS18-218ENST00000581021 SLC25A21Q9BQT8 299 aaPredicted RBP15.23■□□□□ 0.03
SS18-218ENST00000581021 KCNIP3Q9Y2W7 256 aa15.23■□□□□ 0.03
SS18-218ENST00000581021 NXPH3O95157 252 aa15.22■□□□□ 0.03
SS18-218ENST00000581021 HOXA1P49639 335 aaPredicted RBP15.22■□□□□ 0.03
SS18-218ENST00000581021 ERHP84090 104 aaKnown RBP15.22■□□□□ 0.03
SS18-218ENST00000581021 PPP1R1AQ13522 171 aa15.22■□□□□ 0.03
SS18-218ENST00000581021 CNPY1Q3B7I2 92 aa15.22■□□□□ 0.03
SS18-218ENST00000581021 BSXQ3C1V8 233 aa15.22■□□□□ 0.03
SS18-218ENST00000581021 TM4SF20Q53R12 229 aa15.22■□□□□ 0.03
SS18-218ENST00000581021 PLET1Q6UQ28 207 aa15.22■□□□□ 0.03
SS18-218ENST00000581021 Q8N1Y9 231 aa15.22■□□□□ 0.03
SS18-218ENST00000581021 B9D2Q9BPU9 175 aa15.22■□□□□ 0.03
SS18-218ENST00000581021 ZNF436Q9C0F3 470 aaPredicted RBP15.22■□□□□ 0.03
SS18-218ENST00000581021 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.22■□□□□ 0.03
SS18-218ENST00000581021 A0A0B4J2A0 478 aa15.21■□□□□ 0.03
SS18-218ENST00000581021 ZNF320A2RRD8 509 aa15.21■□□□□ 0.03
SS18-218ENST00000581021 SPCS3P61009 180 aa15.21■□□□□ 0.03
SS18-218ENST00000581021 CD300EQ496F6 205 aaPredicted RBP15.21■□□□□ 0.03
SS18-218ENST00000581021 TMEM128Q5BJH2 165 aa15.21■□□□□ 0.03
SS18-218ENST00000581021 UBAC2Q8NBM4 344 aa15.21■□□□□ 0.03
SS18-218ENST00000581021 OR52E5Q8NH55 327 aa15.21■□□□□ 0.03
SS18-218ENST00000581021 PINX1Q96BK5 328 aaKnown RBP15.21■□□□□ 0.03
SS18-218ENST00000581021 BSCL2Q96G97 398 aaPredicted RBP15.21■□□□□ 0.03
SS18-218ENST00000581021 PDCD10Q9BUL8 212 aa15.21■□□□□ 0.03
SS18-218ENST00000581021 SHPKQ9UHJ6 478 aa15.21■□□□□ 0.03
SS18-218ENST00000581021 FLVCR2Q9UPI3 526 aa15.21■□□□□ 0.03
SS18-218ENST00000581021 NDUFB6O95139 128 aa15.2■□□□□ 0.02
SS18-218ENST00000581021 CTSGP08311 255 aa15.2■□□□□ 0.02
SS18-218ENST00000581021 CBLN1P23435 193 aa15.2■□□□□ 0.02
SS18-218ENST00000581021 RBMS2Q15434 407 aaKnown RBP15.2■□□□□ 0.02
SS18-218ENST00000581021 DEFB114Q30KQ6 69 aa15.2■□□□□ 0.02
SS18-218ENST00000581021 FAM106AQ4KMX7 169 aa15.2■□□□□ 0.02
SS18-218ENST00000581021 Q56UQ5 140 aa15.2■□□□□ 0.02
SS18-218ENST00000581021 LGI3Q8N145 548 aa15.2■□□□□ 0.02
SS18-218ENST00000581021 TMEM170AQ8WVE7 144 aa15.2■□□□□ 0.02
SS18-218ENST00000581021 TMEM190Q8WZ59 177 aa15.2■□□□□ 0.02
SS18-218ENST00000581021 ATP6V0BQ99437 205 aa15.2■□□□□ 0.02
SS18-218ENST00000581021 MRPL36Q9P0J6 103 aaKnown RBP15.2■□□□□ 0.02
SS18-218ENST00000581021 IGHV3OR16-8A0A075B7F1 116 aa15.19■□□□□ 0.02
SS18-218ENST00000581021 PLA2G10O15496 165 aa15.19■□□□□ 0.02
SS18-218ENST00000581021 SULT1A3P0DMM9 295 aa15.19■□□□□ 0.02
SS18-218ENST00000581021 SULT1A4P0DMN0 295 aa15.19■□□□□ 0.02
SS18-218ENST00000581021 VAMP1P23763 118 aa15.19■□□□□ 0.02
SS18-218ENST00000581021 FCGR2BP31994 310 aaPredicted RBP15.19■□□□□ 0.02
SS18-218ENST00000581021 INPP1P49441 399 aa15.19■□□□□ 0.02
SS18-218ENST00000581021 CENPSQ8N2Z9 138 aa15.19■□□□□ 0.02
SS18-218ENST00000581021 FNDC4Q9H6D8 234 aaPredicted RBP15.19■□□□□ 0.02
SS18-218ENST00000581021 MLXQ9UH92 298 aa15.19■□□□□ 0.02
SS18-218ENST00000581021 HUWE1Q7Z6Z7 4374 aaKnown RBP15.19■□□□□ 0.02
SS18-218ENST00000581021 NAP1L6A6NFF2 107 aa15.18■□□□□ 0.02
SS18-218ENST00000581021 SFT2D2O95562 160 aa15.18■□□□□ 0.02
SS18-218ENST00000581021 ANXA3P12429 323 aa15.18■□□□□ 0.02
SS18-218ENST00000581021 SNCAP37840 140 aa15.18■□□□□ 0.02
SS18-218ENST00000581021 SRPXP78539 464 aa15.18■□□□□ 0.02
SS18-218ENST00000581021 CD69Q07108 199 aa15.18■□□□□ 0.02
SS18-218ENST00000581021 DCTN2Q13561 401 aaKnown RBP15.18■□□□□ 0.02
SS18-218ENST00000581021 SPSB3Q6PJ21 355 aa15.18■□□□□ 0.02
SS18-218ENST00000581021 SMAD5-AS1Q9Y6J3 95 aa15.18■□□□□ 0.02
SS18-218ENST00000581021 ZNF785A8K8V0 405 aa15.17■□□□□ 0.02
SS18-218ENST00000581021 C8orf88P0DMB2 117 aa15.17■□□□□ 0.02
SS18-218ENST00000581021 SMCO1Q147U7 214 aa15.17■□□□□ 0.02
SS18-218ENST00000581021 MLANAQ16655 118 aa15.17■□□□□ 0.02
SS18-218ENST00000581021 LCN12Q6JVE5 192 aa15.17■□□□□ 0.02
SS18-218ENST00000581021 LRTM2Q8N967 370 aa15.17■□□□□ 0.02
SS18-218ENST00000581021 UXS1Q8NBZ7 420 aa15.17■□□□□ 0.02
SS18-218ENST00000581021 DYNLRB2Q8TF09 96 aa15.17■□□□□ 0.02
SS18-218ENST00000581021 ENY2Q9NPA8 101 aa15.17■□□□□ 0.02
SS18-218ENST00000581021 HSPB7Q9UBY9 170 aa15.17■□□□□ 0.02
SS18-218ENST00000581021 MFAP4P55083 255 aa15.16■□□□□ 0.02
SS18-218ENST00000581021 TNFRSF9Q07011 255 aa15.16■□□□□ 0.02
SS18-218ENST00000581021 BTNL8Q6UX41 500 aa15.16■□□□□ 0.02
SS18-218ENST00000581021 TMEM61Q8N0U2 210 aa15.16■□□□□ 0.02
SS18-218ENST00000581021 OR2K2Q8NGT1 345 aa15.16■□□□□ 0.02
SS18-218ENST00000581021 WDR89Q96FK6 387 aaPredicted RBP15.16■□□□□ 0.02
SS18-218ENST00000581021 CEBPZOSA8MTT3 80 aa15.15■□□□□ 0.02
SS18-218ENST00000581021 NDUFA4O00483 81 aa15.15■□□□□ 0.02
SS18-218ENST00000581021 PITX3O75364 302 aa15.15■□□□□ 0.02
SS18-218ENST00000581021 ANXA7P20073 488 aaKnown RBP15.15■□□□□ 0.02
SS18-218ENST00000581021 TXN2Q99757 166 aa15.15■□□□□ 0.02
SS18-218ENST00000581021 ASCL2Q99929 193 aa15.15■□□□□ 0.02
SS18-218ENST00000581021 C7orf50Q9BRJ6 194 aaKnown RBP15.15■□□□□ 0.02
SS18-218ENST00000581021 HEYLQ9NQ87 328 aaPredicted RBP15.15■□□□□ 0.02
SS18-218ENST00000581021 C9orf170A2RU37 121 aa15.14■□□□□ 0.01
SS18-218ENST00000581021 ZNF207O43670 478 aaKnown RBP15.14■□□□□ 0.01
SS18-218ENST00000581021 FRMD6-AS1P0C7T7 363 aa15.14■□□□□ 0.01
SS18-218ENST00000581021 IGHV4-30-4P0DP06 118 aa15.14■□□□□ 0.01
SS18-218ENST00000581021 ELLP55199 621 aaPredicted RBP15.14■□□□□ 0.01
SS18-218ENST00000581021 SLC24A4Q8NFF2 622 aa15.14■□□□□ 0.01
SS18-218ENST00000581021 RBKSQ9H477 322 aa15.14■□□□□ 0.01
SS18-218ENST00000581021 TECRQ9NZ01 308 aaKnown RBP15.14■□□□□ 0.01
SS18-218ENST00000581021 UFC1Q9Y3C8 167 aa15.14■□□□□ 0.01
SS18-218ENST00000581021 A0A1B0GU03 582 aa15.13■□□□□ 0.01
SS18-218ENST00000581021 DUXBA0A1W2PPF3 345 aa15.13■□□□□ 0.01
SS18-218ENST00000581021 HTR2BP41595 481 aa15.13■□□□□ 0.01
SS18-218ENST00000581021 SUB1P53999 127 aaKnown RBP eCLIP15.13■□□□□ 0.01
SS18-218ENST00000581021 UBE2MP61081 183 aaKnown RBP15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms