RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 FFAR4Q5NUL3 377 aa8.35□□□□□ -1.07
SS18-217ENST00000580958 SLC16A13Q7RTY0 426 aa8.35□□□□□ -1.07
SS18-217ENST00000580958 Q8N9W7 124 aa8.35□□□□□ -1.07
SS18-217ENST00000580958 ZNF114Q8NC26 417 aa8.35□□□□□ -1.07
SS18-217ENST00000580958 MGST2Q99735 147 aa8.35□□□□□ -1.07
SS18-217ENST00000580958 MEGF9Q9H1U4 602 aa8.35□□□□□ -1.07
SS18-217ENST00000580958 NPVFQ9HCQ7 196 aa8.35□□□□□ -1.07
SS18-217ENST00000580958 RPRMQ9NS64 109 aa8.35□□□□□ -1.07
SS18-217ENST00000580958 C1RLQ9NZP8 487 aa8.35□□□□□ -1.07
SS18-217ENST00000580958 AKAP9Q99996 3911 aa8.35□□□□□ -1.07
SS18-217ENST00000580958 RAB19A4D1S5 217 aa8.34□□□□□ -1.07
SS18-217ENST00000580958 NUDT19A8MXV4 375 aa8.34□□□□□ -1.07
SS18-217ENST00000580958 I3L521 148 aa8.34□□□□□ -1.07
SS18-217ENST00000580958 MPDU1O75352 247 aa8.34□□□□□ -1.07
SS18-217ENST00000580958 TSPAN15O95858 294 aa8.34□□□□□ -1.07
SS18-217ENST00000580958 RAB2AP61019 212 aa8.34□□□□□ -1.07
SS18-217ENST00000580958 NDPQ00604 133 aa8.34□□□□□ -1.07
SS18-217ENST00000580958 GAMTQ14353 236 aa8.34□□□□□ -1.07
SS18-217ENST00000580958 PVRIGQ6DKI7 326 aa8.34□□□□□ -1.07
SS18-217ENST00000580958 DPPA3Q6W0C5 159 aa8.34□□□□□ -1.07
SS18-217ENST00000580958 IL34Q6ZMJ4 242 aa8.34□□□□□ -1.07
SS18-217ENST00000580958 EIF4E3Q8N5X7 224 aaKnown RBP8.34□□□□□ -1.07
SS18-217ENST00000580958 OR2T6Q8NHC8 308 aa8.34□□□□□ -1.07
SS18-217ENST00000580958 LYPD6BQ8NI32 183 aa8.34□□□□□ -1.07
SS18-217ENST00000580958 RNASEH2CQ8TDP1 164 aaKnown RBP8.34□□□□□ -1.07
SS18-217ENST00000580958 ARPC1AQ92747 370 aa8.34□□□□□ -1.07
SS18-217ENST00000580958 SLC35E1Q96K37 410 aa8.34□□□□□ -1.07
SS18-217ENST00000580958 SRSF8Q9BRL6 282 aaKnown RBP8.34□□□□□ -1.07
SS18-217ENST00000580958 FAM103A1Q9BTL3 118 aaKnown RBP8.34□□□□□ -1.07
SS18-217ENST00000580958 GGTLC1Q9BX51 225 aa8.34□□□□□ -1.07
SS18-217ENST00000580958 FAM96BQ9Y3D0 163 aa8.34□□□□□ -1.07
SS18-217ENST00000580958 LSM4Q9Y4Z0 139 aaKnown RBP8.34□□□□□ -1.07
SS18-217ENST00000580958 F11RQ9Y624 299 aaKnown RBP8.34□□□□□ -1.07
SS18-217ENST00000580958 CSMD2Q7Z408 3487 aa8.34□□□□□ -1.07
SS18-217ENST00000580958 FASNP49327 2511 aaKnown RBP8.33□□□□□ -1.08
SS18-217ENST00000580958 PDZD2O15018 2839 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 ZFHX3Q15911 3703 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 AGPAT2O15120 278 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 FBP1P09467 338 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 H2AFB1P0C5Y9 115 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 OPRK1P41145 380 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 CX3CL1P78423 397 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 ZNF726P1Q15940 193 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 TOR2AQ5JU69 321 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 MIC13Q5XKP0 118 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 SPSB3Q6PJ21 355 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 TEPPQ6URK8 271 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 ZNF562Q6V9R5 426 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 SSX7Q7RTT5 188 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 TMEM144Q7Z5S9 345 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 TMEM219Q86XT9 240 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 CCDC168Q8NDH2 2452 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 WFDC11Q8NEX6 87 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 OR1P1Q8NH06 330 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 PIFOQ8TCI5 191 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 MISP3Q96FF7 219 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 ACY3Q96HD9 319 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 SSX3Q99909 188 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 RASL11BQ9BPW5 248 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 SLC25A33Q9BSK2 321 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 FNDC4Q9H6D8 234 aaPredicted RBP8.33□□□□□ -1.08
SS18-217ENST00000580958 PXMP4Q9Y6I8 212 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 ZANQ9Y493 2812 aa8.33□□□□□ -1.08
SS18-217ENST00000580958 SVEP1Q4LDE5 3571 aa8.32□□□□□ -1.08
SS18-217ENST00000580958 ITPR2Q14571 2701 aa8.32□□□□□ -1.08
SS18-217ENST00000580958 UNC79Q9P2D8 2635 aa8.32□□□□□ -1.08
SS18-217ENST00000580958 IGHV3-21A0A0B4J1V1 117 aa8.32□□□□□ -1.08
SS18-217ENST00000580958 IGHV7-81A0A0B4J1V7 117 aa8.32□□□□□ -1.08
SS18-217ENST00000580958 MDFIC2A0A1B0GVS7 189 aa8.32□□□□□ -1.08
SS18-217ENST00000580958 SH2D7A6NKC9 451 aaPredicted RBP8.32□□□□□ -1.08
SS18-217ENST00000580958 EIF3GO75821 320 aaKnown RBP eCLIP8.32□□□□□ -1.08
SS18-217ENST00000580958 YIF1AO95070 293 aa8.32□□□□□ -1.08
SS18-217ENST00000580958 IGHV3-48P01763 117 aa8.32□□□□□ -1.08
SS18-217ENST00000580958 HLA-DRB1P01911 266 aa8.32□□□□□ -1.08
SS18-217ENST00000580958 MBP02144 154 aa8.32□□□□□ -1.08
SS18-217ENST00000580958 CTRB1P17538 263 aa8.32□□□□□ -1.08
SS18-217ENST00000580958 OR10J1P30954 320 aa8.32□□□□□ -1.08
SS18-217ENST00000580958 RAB31Q13636 194 aa8.32□□□□□ -1.08
SS18-217ENST00000580958 LY6EQ16553 131 aa8.32□□□□□ -1.08
SS18-217ENST00000580958 ACOT6Q3I5F7 207 aaPredicted RBP8.32□□□□□ -1.08
SS18-217ENST00000580958 ASPHD1Q5U4P2 390 aa8.32□□□□□ -1.08
SS18-217ENST00000580958 CYB5R2Q6BCY4 276 aa8.32□□□□□ -1.08
SS18-217ENST00000580958 CTRB2Q6GPI1 263 aa8.32□□□□□ -1.08
SS18-217ENST00000580958 FAM122CQ6P4D5 195 aa8.32□□□□□ -1.08
SS18-217ENST00000580958 COMMD1Q8N668 190 aa8.32□□□□□ -1.08
SS18-217ENST00000580958 CACNG8Q8WXS5 425 aa8.32□□□□□ -1.08
SS18-217ENST00000580958 RCC1LQ96I51 464 aaKnown RBP8.32□□□□□ -1.08
SS18-217ENST00000580958 RBM14Q96PK6 669 aaKnown RBP8.32□□□□□ -1.08
SS18-217ENST00000580958 HSPB9Q9BQS6 159 aa8.32□□□□□ -1.08
SS18-217ENST00000580958 WNT10AQ9GZT5 417 aa8.32□□□□□ -1.08
SS18-217ENST00000580958 KCNIP2Q9NS61 270 aa8.32□□□□□ -1.08
SS18-217ENST00000580958 MRPL36Q9P0J6 103 aaKnown RBP8.32□□□□□ -1.08
SS18-217ENST00000580958 MOB4Q9Y3A3 225 aa8.32□□□□□ -1.08
SS18-217ENST00000580958 DMRT1Q9Y5R6 373 aa8.32□□□□□ -1.08
SS18-217ENST00000580958 IGKV1OR2-108A0A075B7D4 117 aa8.31□□□□□ -1.08
SS18-217ENST00000580958 A6NDX4 124 aa8.31□□□□□ -1.08
SS18-217ENST00000580958 H3BUX3 64 aa8.31□□□□□ -1.08
SS18-217ENST00000580958 CORTO00230 105 aa8.31□□□□□ -1.08
SS18-217ENST00000580958 FSHBP01225 129 aa8.31□□□□□ -1.08
SS18-217ENST00000580958 HBE1P02100 147 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms