RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 TMEM41BQ5BJD5 291 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 FAM74A1Q5RGS3 127 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 PVRIGQ6DKI7 326 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 BTNL8Q6UX41 500 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 RBMS3Q6XE24 437 aaKnown RBP6.38□□□□□ -1.39
VPS39-213ENST00000570062 TMEM182Q6ZP80 229 aaPredicted RBP6.38□□□□□ -1.39
VPS39-213ENST00000570062 Q6ZRG5 221 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 HAPLN4Q86UW8 402 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 NANPQ8TBE9 248 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 SUN5Q8TC36 379 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 MBD3L1Q8WWY6 194 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 BSCL2Q96G97 398 aaPredicted RBP6.38□□□□□ -1.39
VPS39-213ENST00000570062 CITED4Q96RK1 184 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 RNF2Q99496 336 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 RASL11BQ9BPW5 248 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 NPCDR1Q9BY65 106 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 ACTR3CQ9C0K3 210 aaPredicted RBP6.38□□□□□ -1.39
VPS39-213ENST00000570062 HIF1ANQ9NWT6 349 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 SPTBN1Q01082 2364 aaKnown RBP6.37□□□□□ -1.39
VPS39-213ENST00000570062 A0A1W2PPV4 95 aa6.37□□□□□ -1.39
VPS39-213ENST00000570062 NCBP2LA6PVI3 153 aaKnown RBP6.37□□□□□ -1.39
VPS39-213ENST00000570062 PRSS46E5RG02 174 aa6.37□□□□□ -1.39
VPS39-213ENST00000570062 OR13C7P0DN81 318 aa6.37□□□□□ -1.39
VPS39-213ENST00000570062 RNASE2P10153 161 aaKnown RBP6.37□□□□□ -1.39
VPS39-213ENST00000570062 HIST1H1BP16401 226 aaKnown RBP6.37□□□□□ -1.39
VPS39-213ENST00000570062 AKR1C1Q04828 323 aa6.37□□□□□ -1.39
VPS39-213ENST00000570062 ZNF616Q08AN1 781 aa6.37□□□□□ -1.39
VPS39-213ENST00000570062 KLRD1Q13241 179 aa6.37□□□□□ -1.39
VPS39-213ENST00000570062 TMEM249Q2WGJ8 235 aa6.37□□□□□ -1.39
VPS39-213ENST00000570062 CDPF1Q6NVV7 123 aa6.37□□□□□ -1.39
VPS39-213ENST00000570062 LHFPL4Q7Z7J7 247 aa6.37□□□□□ -1.39
VPS39-213ENST00000570062 Q8N6K4 173 aa6.37□□□□□ -1.39
VPS39-213ENST00000570062 FAM213BQ8TBF2 198 aa6.37□□□□□ -1.39
VPS39-213ENST00000570062 SRSF12Q8WXF0 261 aaKnown RBP6.37□□□□□ -1.39
VPS39-213ENST00000570062 CXorf58Q96LI9 332 aa6.37□□□□□ -1.39
VPS39-213ENST00000570062 REG4Q9BYZ8 158 aa6.37□□□□□ -1.39
VPS39-213ENST00000570062 HRH4Q9H3N8 390 aa6.37□□□□□ -1.39
VPS39-213ENST00000570062 SLC39A9Q9NUM3 307 aa6.37□□□□□ -1.39
VPS39-213ENST00000570062 RNF24Q9Y225 148 aa6.37□□□□□ -1.39
VPS39-213ENST00000570062 F11RQ9Y624 299 aaKnown RBP6.37□□□□□ -1.39
VPS39-213ENST00000570062 CENPEQ02224 2701 aa6.37□□□□□ -1.39
VPS39-213ENST00000570062 MALRD1Q5VYJ5 2156 aa6.37□□□□□ -1.39
VPS39-213ENST00000570062 TRAV30A0A087WSZ9 112 aa6.36□□□□□ -1.39
VPS39-213ENST00000570062 SMCO3A2RU48 225 aa6.36□□□□□ -1.39
VPS39-213ENST00000570062 NPIPB5A8MRT5 1133 aa6.36□□□□□ -1.39
VPS39-213ENST00000570062 I3L521 148 aa6.36□□□□□ -1.39
VPS39-213ENST00000570062 HLA-DRB1P01911 266 aa6.36□□□□□ -1.39
VPS39-213ENST00000570062 CRYGCP07315 174 aa6.36□□□□□ -1.39
VPS39-213ENST00000570062 DEFA4P12838 97 aa6.36□□□□□ -1.39
VPS39-213ENST00000570062 FXYD3Q14802 87 aa6.36□□□□□ -1.39
VPS39-213ENST00000570062 SPINK9Q5DT21 86 aa6.36□□□□□ -1.39
VPS39-213ENST00000570062 Q5PR19 223 aa6.36□□□□□ -1.39
VPS39-213ENST00000570062 CYB5R2Q6BCY4 276 aa6.36□□□□□ -1.39
VPS39-213ENST00000570062 ABHD5Q8WTS1 349 aa6.36□□□□□ -1.39
VPS39-213ENST00000570062 TMEM190Q8WZ59 177 aa6.36□□□□□ -1.39
VPS39-213ENST00000570062 P2RX4Q99571 388 aa6.36□□□□□ -1.39
VPS39-213ENST00000570062 TXNDC17Q9BRA2 123 aa6.36□□□□□ -1.39
VPS39-213ENST00000570062 SH3BGRL3Q9H299 93 aa6.36□□□□□ -1.39
VPS39-213ENST00000570062 FBXL15Q9H469 300 aa6.36□□□□□ -1.39
VPS39-213ENST00000570062 GAR1Q9NY12 217 aaKnown RBP6.36□□□□□ -1.39
VPS39-213ENST00000570062 LSM4Q9Y4Z0 139 aaKnown RBP6.36□□□□□ -1.39
VPS39-213ENST00000570062 DSCAML1Q8TD84 2053 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 CTXND1A0A1B0GTU2 59 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 A0A1W2PRD5 423 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 A0A1W2PRF3 423 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 A0A1W2PRM7 423 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 IGLC7A0M8Q6 106 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 ANKRD34BA5PLL1 514 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 HMGB3O15347 200 aaKnown RBP6.35□□□□□ -1.39
VPS39-213ENST00000570062 TGFAP01135 160 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 OPN1MWP04001 364 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 OPN1MW2P0DN77 364 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 OPN1MW3P0DN78 364 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 ZP3P21754 424 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 ADMP35318 185 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 PSMB3P49720 205 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 TAS2R45P59539 299 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 RHOBP62745 196 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 GNB1P62873 340 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 RUNX1Q01196 453 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 WT1-ASQ06250 92 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 SCGB2A2Q13296 93 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 HNF4GQ14541 408 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 FFAR4Q5NUL3 377 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 LDLRAD2Q5SZI1 272 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 SLC16A13Q7RTY0 426 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 TTC9CQ8N5M4 171 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 OR10G4Q8NGN3 311 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 OR10G9Q8NGN4 311 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 OR10G7Q8NGN6 311 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 OR1L4Q8NGR5 311 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 OR5R1Q8NH85 324 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 SFT2D1Q8WV19 159 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 ARPC1AQ92747 370 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 AJUBAQ96IF1 538 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 RITA1Q96K30 269 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 RBM14Q96PK6 669 aaKnown RBP6.35□□□□□ -1.39
VPS39-213ENST00000570062 ATP6V0BQ99437 205 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 PFDN5Q99471 154 aa6.35□□□□□ -1.39
VPS39-213ENST00000570062 FOXC2Q99958 501 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms