RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 CACFD1Q9UGQ2 172 aa14.12□□□□□ -0.15
CLN3-227ENST00000567495 KCNIP3Q9Y2W7 256 aa14.12□□□□□ -0.15
CLN3-227ENST00000567495 CRYM-AS1A6NIL9 109 aa14.11□□□□□ -0.15
CLN3-227ENST00000567495 I3L2K1 104 aa14.11□□□□□ -0.15
CLN3-227ENST00000567495 NUPL2O15504 423 aaKnown RBP14.11□□□□□ -0.15
CLN3-227ENST00000567495 ST8SIA3O43173 380 aa14.11□□□□□ -0.15
CLN3-227ENST00000567495 OR5AC1P0C628 307 aa14.11□□□□□ -0.15
CLN3-227ENST00000567495 SUB1P53999 127 aaKnown RBP eCLIP14.11□□□□□ -0.15
CLN3-227ENST00000567495 CD81P60033 236 aa14.11□□□□□ -0.15
CLN3-227ENST00000567495 RELQ04864 619 aaPredicted RBP14.11□□□□□ -0.15
CLN3-227ENST00000567495 SLC16A13Q7RTY0 426 aa14.11□□□□□ -0.15
CLN3-227ENST00000567495 UBAC2Q8NBM4 344 aa14.11□□□□□ -0.15
CLN3-227ENST00000567495 DEDD2Q8WXF8 326 aa14.11□□□□□ -0.15
CLN3-227ENST00000567495 CACNG8Q8WXS5 425 aa14.11□□□□□ -0.15
CLN3-227ENST00000567495 RCHY1Q96PM5 261 aa14.11□□□□□ -0.15
CLN3-227ENST00000567495 NEURL2Q9BR09 285 aa14.11□□□□□ -0.15
CLN3-227ENST00000567495 ENY2Q9NPA8 101 aa14.11□□□□□ -0.15
CLN3-227ENST00000567495 MCUBQ9NWR8 336 aa14.11□□□□□ -0.15
CLN3-227ENST00000567495 IGHV3-21A0A0B4J1V1 117 aa14.1□□□□□ -0.15
CLN3-227ENST00000567495 IGHV3-35A0A0C4DH35 117 aa14.1□□□□□ -0.15
CLN3-227ENST00000567495 F8W735 103 aaPredicted RBP14.1□□□□□ -0.15
CLN3-227ENST00000567495 K7EMT4 169 aa14.1□□□□□ -0.15
CLN3-227ENST00000567495 CORTO00230 105 aa14.1□□□□□ -0.15
CLN3-227ENST00000567495 AARDQ4LEZ3 155 aa14.1□□□□□ -0.15
CLN3-227ENST00000567495 TMEM61Q8N0U2 210 aa14.1□□□□□ -0.15
CLN3-227ENST00000567495 TM2D3Q9BRN9 247 aa14.1□□□□□ -0.15
CLN3-227ENST00000567495 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.1□□□□□ -0.15
CLN3-227ENST00000567495 MLXQ9UH92 298 aa14.1□□□□□ -0.15
CLN3-227ENST00000567495 PIGBOS1A0A0B4J2F0 54 aa14.09□□□□□ -0.15
CLN3-227ENST00000567495 MT-CO2P00403 227 aa14.09□□□□□ -0.15
CLN3-227ENST00000567495 CTSGP08311 255 aa14.09□□□□□ -0.15
CLN3-227ENST00000567495 ADMP35318 185 aa14.09□□□□□ -0.15
CLN3-227ENST00000567495 SPCS3P61009 180 aa14.09□□□□□ -0.15
CLN3-227ENST00000567495 PYDC2Q56P42 97 aa14.09□□□□□ -0.15
CLN3-227ENST00000567495 RBPMS2Q6ZRY4 209 aaKnown RBP14.09□□□□□ -0.15
CLN3-227ENST00000567495 OR52E5Q8NH55 327 aa14.09□□□□□ -0.15
CLN3-227ENST00000567495 IL22RA2Q969J5 263 aa14.09□□□□□ -0.15
CLN3-227ENST00000567495 WDR89Q96FK6 387 aaPredicted RBP14.09□□□□□ -0.15
CLN3-227ENST00000567495 GALNT14Q96FL9 552 aa14.09□□□□□ -0.15
CLN3-227ENST00000567495 CHRDL1Q9BU40 450 aa14.09□□□□□ -0.15
CLN3-227ENST00000567495 RBM38Q9H0Z9 239 aaKnown RBP14.09□□□□□ -0.15
CLN3-227ENST00000567495 TMEM56-RWDD3S4R434 201 aa14.09□□□□□ -0.15
CLN3-227ENST00000567495 C15orf62A8K5M9 175 aa14.08□□□□□ -0.16
CLN3-227ENST00000567495 EDN2P20800 178 aa14.08□□□□□ -0.16
CLN3-227ENST00000567495 ETV6P41212 452 aa14.08□□□□□ -0.16
CLN3-227ENST00000567495 HOXA1P49639 335 aaPredicted RBP14.08□□□□□ -0.16
CLN3-227ENST00000567495 PVRIGQ6DKI7 326 aa14.08□□□□□ -0.16
CLN3-227ENST00000567495 BTNL8Q6UX41 500 aa14.08□□□□□ -0.16
CLN3-227ENST00000567495 SELENOHQ8IZQ5 122 aaKnown RBP14.08□□□□□ -0.16
CLN3-227ENST00000567495 NPBWR1P48145 328 aa14.07□□□□□ -0.16
CLN3-227ENST00000567495 SRPXP78539 464 aa14.07□□□□□ -0.16
CLN3-227ENST00000567495 HAGHQ16775 308 aa14.07□□□□□ -0.16
CLN3-227ENST00000567495 SPINK9Q5DT21 86 aa14.07□□□□□ -0.16
CLN3-227ENST00000567495 TMEM268Q5VZI3 342 aa14.07□□□□□ -0.16
CLN3-227ENST00000567495 LAMTOR1Q6IAA8 161 aa14.07□□□□□ -0.16
CLN3-227ENST00000567495 DUSP18Q8NEJ0 188 aa14.07□□□□□ -0.16
CLN3-227ENST00000567495 PINX1Q96BK5 328 aaKnown RBP14.07□□□□□ -0.16
CLN3-227ENST00000567495 SPATA25Q9BR10 227 aa14.07□□□□□ -0.16
CLN3-227ENST00000567495 C20orf24Q9BUV8 137 aa14.07□□□□□ -0.16
CLN3-227ENST00000567495 V9GYH0 126 aa14.07□□□□□ -0.16
CLN3-227ENST00000567495 A0A0G2JRQ6 117 aa14.06□□□□□ -0.16
CLN3-227ENST00000567495 OR11H12B2RN74 326 aa14.06□□□□□ -0.16
CLN3-227ENST00000567495 GNG7O60262 68 aa14.06□□□□□ -0.16
CLN3-227ENST00000567495 CD7P09564 240 aa14.06□□□□□ -0.16
CLN3-227ENST00000567495 KLF9Q13886 244 aaPredicted RBP14.06□□□□□ -0.16
CLN3-227ENST00000567495 SPANXN2Q5MJ10 180 aa14.06□□□□□ -0.16
CLN3-227ENST00000567495 Q6ZRM9 215 aa14.06□□□□□ -0.16
CLN3-227ENST00000567495 TOMM5Q8N4H5 51 aa14.06□□□□□ -0.16
CLN3-227ENST00000567495 OR52B4Q8NGK2 314 aa14.06□□□□□ -0.16
CLN3-227ENST00000567495 LHFPL5Q8TAF8 219 aa14.06□□□□□ -0.16
CLN3-227ENST00000567495 TRIM63Q969Q1 353 aa14.06□□□□□ -0.16
CLN3-227ENST00000567495 SPAG8Q99932 426 aaPredicted RBP14.06□□□□□ -0.16
CLN3-227ENST00000567495 SCAF4O95104 1147 aaKnown RBP14.05□□□□□ -0.16
CLN3-227ENST00000567495 RNASE2P10153 161 aaKnown RBP14.05□□□□□ -0.16
CLN3-227ENST00000567495 ANXA3P12429 323 aa14.05□□□□□ -0.16
CLN3-227ENST00000567495 HTR2BP41595 481 aa14.05□□□□□ -0.16
CLN3-227ENST00000567495 LINC00322Q6ZN03 302 aaPredicted RBP14.05□□□□□ -0.16
CLN3-227ENST00000567495 CCDC190Q86UF4 302 aa14.05□□□□□ -0.16
CLN3-227ENST00000567495 CACNG5Q9UF02 275 aa14.05□□□□□ -0.16
CLN3-227ENST00000567495 C3orf84H3BNL1 204 aa14.04□□□□□ -0.16
CLN3-227ENST00000567495 TSPAN4O14817 238 aa14.04□□□□□ -0.16
CLN3-227ENST00000567495 SCGB2A1O75556 95 aa14.04□□□□□ -0.16
CLN3-227ENST00000567495 YIF1AO95070 293 aa14.04□□□□□ -0.16
CLN3-227ENST00000567495 AKR1C4P17516 323 aa14.04□□□□□ -0.16
CLN3-227ENST00000567495 TMEM187Q14656 261 aa14.04□□□□□ -0.16
CLN3-227ENST00000567495 BSXQ3C1V8 233 aa14.04□□□□□ -0.16
CLN3-227ENST00000567495 TMEM230Q96A57 120 aa14.04□□□□□ -0.16
CLN3-227ENST00000567495 GPR146Q96CH1 333 aa14.04□□□□□ -0.16
CLN3-227ENST00000567495 OR10C1Q96KK4 312 aa14.04□□□□□ -0.16
CLN3-227ENST00000567495 SLC25A21Q9BQT8 299 aaPredicted RBP14.04□□□□□ -0.16
CLN3-227ENST00000567495 A0A0B4J2A0 478 aa14.03□□□□□ -0.16
CLN3-227ENST00000567495 SULT1A3P0DMM9 295 aa14.03□□□□□ -0.16
CLN3-227ENST00000567495 SULT1A4P0DMN0 295 aa14.03□□□□□ -0.16
CLN3-227ENST00000567495 BMI1P35226 326 aa14.03□□□□□ -0.16
CLN3-227ENST00000567495 ZNF79Q15937 498 aa14.03□□□□□ -0.16
CLN3-227ENST00000567495 NOXA1Q86UR1 476 aa14.03□□□□□ -0.16
CLN3-227ENST00000567495 LGI3Q8N145 548 aa14.03□□□□□ -0.16
CLN3-227ENST00000567495 DEFB125Q8N687 156 aa14.03□□□□□ -0.16
CLN3-227ENST00000567495 CITED4Q96RK1 184 aa14.03□□□□□ -0.16
CLN3-227ENST00000567495 GINS3Q9BRX5 216 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms