RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 CEBPZOSA8MTT3 80 aa14.98□□□□□ -0.01
CLN3-225ENST00000566824 F8W735 103 aaPredicted RBP14.98□□□□□ -0.01
CLN3-225ENST00000566824 I3L2K1 104 aa14.98□□□□□ -0.01
CLN3-225ENST00000566824 PVRIGQ6DKI7 326 aa14.98□□□□□ -0.01
CLN3-225ENST00000566824 ZNF431Q8TF32 576 aaPredicted RBP14.98□□□□□ -0.01
CLN3-225ENST00000566824 SCARB1Q8WTV0 552 aa14.98□□□□□ -0.01
CLN3-225ENST00000566824 KLF5Q13887 457 aaPredicted RBP14.97□□□□□ -0.01
CLN3-225ENST00000566824 RCC1LQ96I51 464 aaKnown RBP14.97□□□□□ -0.01
CLN3-225ENST00000566824 OR10C1Q96KK4 312 aa14.97□□□□□ -0.01
CLN3-225ENST00000566824 MAGT1Q9H0U3 335 aa14.97□□□□□ -0.01
CLN3-225ENST00000566824 ENY2Q9NPA8 101 aa14.97□□□□□ -0.01
CLN3-225ENST00000566824 HEYLQ9NQ87 328 aaPredicted RBP14.97□□□□□ -0.01
CLN3-225ENST00000566824 CCSO14618 274 aa14.96□□□□□ -0.01
CLN3-225ENST00000566824 OVOL1O14753 267 aa14.96□□□□□ -0.01
CLN3-225ENST00000566824 CLEC3BP05452 202 aa14.96□□□□□ -0.01
CLN3-225ENST00000566824 SLC25A6P12236 298 aa14.96□□□□□ -0.01
CLN3-225ENST00000566824 SNCAP37840 140 aa14.96□□□□□ -0.01
CLN3-225ENST00000566824 DEFA1P59665 94 aa14.96□□□□□ -0.01
CLN3-225ENST00000566824 DEFA3P59666 94 aa14.96□□□□□ -0.01
CLN3-225ENST00000566824 MLANAQ16655 118 aa14.96□□□□□ -0.01
CLN3-225ENST00000566824 BEAN1Q3B7T3 259 aa14.96□□□□□ -0.01
CLN3-225ENST00000566824 VN1R17PQ8TDU5 208 aa14.96□□□□□ -0.01
CLN3-225ENST00000566824 CXorf58Q96LI9 332 aa14.96□□□□□ -0.01
CLN3-225ENST00000566824 THYN1Q9P016 225 aa14.96□□□□□ -0.01
CLN3-225ENST00000566824 TRBV7-1A0A0A6YYK4 115 aa14.95□□□□□ -0.02
CLN3-225ENST00000566824 OR2C1O95371 312 aa14.95□□□□□ -0.02
CLN3-225ENST00000566824 MT-CO2P00403 227 aa14.95□□□□□ -0.02
CLN3-225ENST00000566824 GPR183P32249 361 aa14.95□□□□□ -0.02
CLN3-225ENST00000566824 ARL3P36405 182 aa14.95□□□□□ -0.02
CLN3-225ENST00000566824 SYNJ2BPP57105 145 aa14.95□□□□□ -0.02
CLN3-225ENST00000566824 UXS1Q8NBZ7 420 aa14.95□□□□□ -0.02
CLN3-225ENST00000566824 OR1L6Q8NGR2 347 aa14.95□□□□□ -0.02
CLN3-225ENST00000566824 DTD1Q8TEA8 209 aa14.95□□□□□ -0.02
CLN3-225ENST00000566824 PINX1Q96BK5 328 aaKnown RBP14.95□□□□□ -0.02
CLN3-225ENST00000566824 ZNF414Q96IQ9 312 aa14.95□□□□□ -0.02
CLN3-225ENST00000566824 MRPL36Q9P0J6 103 aaKnown RBP14.95□□□□□ -0.02
CLN3-225ENST00000566824 SEC14L6B5MCN3 397 aa14.94□□□□□ -0.02
CLN3-225ENST00000566824 INMT-MINDY4F8WBC2 141 aa14.94□□□□□ -0.02
CLN3-225ENST00000566824 CYB5BO43169 146 aa14.94□□□□□ -0.02
CLN3-225ENST00000566824 IL5P05113 134 aa14.94□□□□□ -0.02
CLN3-225ENST00000566824 IAPPP10997 89 aa14.94□□□□□ -0.02
CLN3-225ENST00000566824 ZP3P21754 424 aa14.94□□□□□ -0.02
CLN3-225ENST00000566824 RPEL1Q2QD12 228 aa14.94□□□□□ -0.02
CLN3-225ENST00000566824 C12orf45Q8N5I9 185 aaPredicted RBP14.94□□□□□ -0.02
CLN3-225ENST00000566824 OR4D5Q8NGN0 318 aa14.94□□□□□ -0.02
CLN3-225ENST00000566824 CHRDL1Q9BU40 450 aa14.94□□□□□ -0.02
CLN3-225ENST00000566824 FNDC4Q9H6D8 234 aaPredicted RBP14.94□□□□□ -0.02
CLN3-225ENST00000566824 C21orf62Q9NYP8 219 aa14.94□□□□□ -0.02
CLN3-225ENST00000566824 PIGBOS1A0A0B4J2F0 54 aa14.93□□□□□ -0.02
CLN3-225ENST00000566824 IGHV3-35A0A0C4DH35 117 aa14.93□□□□□ -0.02
CLN3-225ENST00000566824 OR2T8A6NH00 312 aa14.93□□□□□ -0.02
CLN3-225ENST00000566824 PRB2P02812 416 aaPredicted RBP14.93□□□□□ -0.02
CLN3-225ENST00000566824 EDN2P20800 178 aa14.93□□□□□ -0.02
CLN3-225ENST00000566824 KRTAP10-11P60412 298 aa14.93□□□□□ -0.02
CLN3-225ENST00000566824 KPRPQ5T749 579 aaPredicted RBP14.93□□□□□ -0.02
CLN3-225ENST00000566824 PLET1Q6UQ28 207 aa14.93□□□□□ -0.02
CLN3-225ENST00000566824 IL34Q6ZMJ4 242 aa14.93□□□□□ -0.02
CLN3-225ENST00000566824 MARVELD1Q9BSK0 173 aa14.93□□□□□ -0.02
CLN3-225ENST00000566824 GGCTO75223 188 aaKnown RBP14.92□□□□□ -0.02
CLN3-225ENST00000566824 IFNA21P01568 189 aa14.92□□□□□ -0.02
CLN3-225ENST00000566824 ADMP35318 185 aa14.92□□□□□ -0.02
CLN3-225ENST00000566824 HTR2BP41595 481 aa14.92□□□□□ -0.02
CLN3-225ENST00000566824 IAH1Q2TAA2 248 aaPredicted RBP14.92□□□□□ -0.02
CLN3-225ENST00000566824 C2orf83Q53S99 150 aa14.92□□□□□ -0.02
CLN3-225ENST00000566824 ACSM6Q6P461 480 aa14.92□□□□□ -0.02
CLN3-225ENST00000566824 HAPLN4Q86UW8 402 aa14.92□□□□□ -0.02
CLN3-225ENST00000566824 ZBTB8BQ8NAP8 495 aaPredicted RBP14.92□□□□□ -0.02
CLN3-225ENST00000566824 UBAC2Q8NBM4 344 aa14.92□□□□□ -0.02
CLN3-225ENST00000566824 SLC24A4Q8NFF2 622 aa14.92□□□□□ -0.02
CLN3-225ENST00000566824 SUB1P53999 127 aaKnown RBP eCLIP14.92□□□□□ -0.02
CLN3-225ENST00000566824 ID3Q02535 119 aa14.92□□□□□ -0.02
CLN3-225ENST00000566824 HIPK2Q9H2X6 1198 aa14.92□□□□□ -0.02
CLN3-225ENST00000566824 FAM90A26D6RGX4 464 aa14.91□□□□□ -0.02
CLN3-225ENST00000566824 TGOLN2O43493 480 aa14.91□□□□□ -0.02
CLN3-225ENST00000566824 CTSGP08311 255 aa14.91□□□□□ -0.02
CLN3-225ENST00000566824 NPY1RP25929 384 aa14.91□□□□□ -0.02
CLN3-225ENST00000566824 POLR2GP62487 172 aaKnown RBP eCLIP14.91□□□□□ -0.02
CLN3-225ENST00000566824 Q56UQ5 140 aa14.91□□□□□ -0.02
CLN3-225ENST00000566824 ADAMTSL5Q6ZMM2 481 aa14.91□□□□□ -0.02
CLN3-225ENST00000566824 MCRIP2Q9BUT9 160 aaKnown RBP14.91□□□□□ -0.02
CLN3-225ENST00000566824 C15orf62A8K5M9 175 aa14.9□□□□□ -0.02
CLN3-225ENST00000566824 WRBO00258 174 aa14.9□□□□□ -0.02
CLN3-225ENST00000566824 SYNGR2O43760 224 aa14.9□□□□□ -0.02
CLN3-225ENST00000566824 TMEM50AO95807 157 aa14.9□□□□□ -0.02
CLN3-225ENST00000566824 IFNA10P01566 189 aa14.9□□□□□ -0.02
CLN3-225ENST00000566824 MFAP4P55083 255 aa14.9□□□□□ -0.02
CLN3-225ENST00000566824 FAM209BQ5JX69 171 aa14.9□□□□□ -0.02
CLN3-225ENST00000566824 C9orf66Q5T8R8 295 aa14.9□□□□□ -0.02
CLN3-225ENST00000566824 UNQ9165/PRO28630Q6UXU0 137 aa14.9□□□□□ -0.02
CLN3-225ENST00000566824 OR9G4Q8NGQ1 327 aa14.9□□□□□ -0.02
CLN3-225ENST00000566824 OR4C12Q96R67 309 aa14.9□□□□□ -0.02
CLN3-225ENST00000566824 GSKIPQ9P0R6 139 aa14.9□□□□□ -0.02
CLN3-225ENST00000566824 CACFD1Q9UGQ2 172 aa14.9□□□□□ -0.02
CLN3-225ENST00000566824 FAM25EA8MYX2 175 aa14.89□□□□□ -0.03
CLN3-225ENST00000566824 WIPF1O43516 503 aa14.89□□□□□ -0.03
CLN3-225ENST00000566824 SAP30O75446 220 aa14.89□□□□□ -0.03
CLN3-225ENST00000566824 CSN3P07498 182 aa14.89□□□□□ -0.03
CLN3-225ENST00000566824 DEFA6Q01524 100 aa14.89□□□□□ -0.03
CLN3-225ENST00000566824 GPHB5Q86YW7 130 aa14.89□□□□□ -0.03
CLN3-225ENST00000566824 BSCL2Q96G97 398 aaPredicted RBP14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms