RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 WFDC12Q8WWY7 111 aa16.08■□□□□ 0.16
CLN3-212ENST00000564574 USMG5Q96IX5 58 aa16.08■□□□□ 0.16
CLN3-212ENST00000564574 DMRT1Q9Y5R6 373 aa16.08■□□□□ 0.16
CLN3-212ENST00000564574 ATRQ13535 2644 aa16.08■□□□□ 0.16
CLN3-212ENST00000564574 A0A0G2JLM5 398 aa16.07■□□□□ 0.16
CLN3-212ENST00000564574 C15orf62A8K5M9 175 aa16.07■□□□□ 0.16
CLN3-212ENST00000564574 H0YIZ8 118 aa16.07■□□□□ 0.16
CLN3-212ENST00000564574 OR2J3O76001 311 aa16.07■□□□□ 0.16
CLN3-212ENST00000564574 SCAF4O95104 1147 aaKnown RBP16.07■□□□□ 0.16
CLN3-212ENST00000564574 OR8U8P0C7N1 319 aa16.07■□□□□ 0.16
CLN3-212ENST00000564574 LYL1P12980 280 aa16.07■□□□□ 0.16
CLN3-212ENST00000564574 P2RY1P47900 373 aa16.07■□□□□ 0.16
CLN3-212ENST00000564574 RHOGP84095 191 aa16.07■□□□□ 0.16
CLN3-212ENST00000564574 EXOSC2Q13868 293 aaKnown RBP16.07■□□□□ 0.16
CLN3-212ENST00000564574 TMEM14EPQ6UXP3 125 aa16.07■□□□□ 0.16
CLN3-212ENST00000564574 OR2T35Q8NGX2 323 aa16.07■□□□□ 0.16
CLN3-212ENST00000564574 TMEM170AQ8WVE7 144 aa16.07■□□□□ 0.16
CLN3-212ENST00000564574 OR4C12Q96R67 309 aa16.07■□□□□ 0.16
CLN3-212ENST00000564574 KLK15Q9H2R5 256 aa16.07■□□□□ 0.16
CLN3-212ENST00000564574 LYRM2Q9NU23 88 aaPredicted RBP16.07■□□□□ 0.16
CLN3-212ENST00000564574 OR5AC2Q9NZP5 309 aa16.07■□□□□ 0.16
CLN3-212ENST00000564574 FBXL7Q9UJT9 491 aa16.07■□□□□ 0.16
CLN3-212ENST00000564574 TRAV14DV4A0A0A6YYC5 116 aa16.06■□□□□ 0.16
CLN3-212ENST00000564574 H3BP45 60 aa16.06■□□□□ 0.16
CLN3-212ENST00000564574 CCNKO75909 580 aa16.06■□□□□ 0.16
CLN3-212ENST00000564574 MISP3Q96FF7 219 aa16.06■□□□□ 0.16
CLN3-212ENST00000564574 RNF126Q9BV68 326 aa16.06■□□□□ 0.16
CLN3-212ENST00000564574 MBD2Q9UBB5 411 aa16.06■□□□□ 0.16
CLN3-212ENST00000564574 FBN1P35555 2871 aaKnown RBP16.06■□□□□ 0.16
CLN3-212ENST00000564574 IFNA4P05014 189 aa16.05■□□□□ 0.16
CLN3-212ENST00000564574 RPLP1P05386 114 aaKnown RBP16.05■□□□□ 0.16
CLN3-212ENST00000564574 CD28P10747 220 aa16.05■□□□□ 0.16
CLN3-212ENST00000564574 CAV2P51636 162 aa16.05■□□□□ 0.16
CLN3-212ENST00000564574 TCTEX1D4Q5JR98 221 aa16.05■□□□□ 0.16
CLN3-212ENST00000564574 ETV3LQ6ZN32 361 aa16.05■□□□□ 0.16
CLN3-212ENST00000564574 AKAP14Q86UN6 197 aa16.05■□□□□ 0.16
CLN3-212ENST00000564574 ZNF491Q8N8L2 437 aa16.05■□□□□ 0.16
CLN3-212ENST00000564574 CXorf58Q96LI9 332 aa16.05■□□□□ 0.16
CLN3-212ENST00000564574 UBE2E2Q96LR5 201 aa16.05■□□□□ 0.16
CLN3-212ENST00000564574 RANGRFQ9HD47 186 aaPredicted RBP16.05■□□□□ 0.16
CLN3-212ENST00000564574 PAIP2BQ9ULR5 123 aaKnown RBP16.05■□□□□ 0.16
CLN3-212ENST00000564574 COL6A5A8TX70 2615 aa16.05■□□□□ 0.16
CLN3-212ENST00000564574 RPS10-NUDT3A0A1W2PQS6 291 aa16.04■□□□□ 0.16
CLN3-212ENST00000564574 TCRBV4S1A1TA0A5B7 111 aa16.04■□□□□ 0.16
CLN3-212ENST00000564574 NDUFB8O95169 186 aa16.04■□□□□ 0.16
CLN3-212ENST00000564574 SLC25A4P12235 298 aa16.04■□□□□ 0.16
CLN3-212ENST00000564574 ATP5G2Q06055 141 aa16.04■□□□□ 0.16
CLN3-212ENST00000564574 KIAA0141Q14154 515 aaPredicted RBP16.04■□□□□ 0.16
CLN3-212ENST00000564574 ETFRF1Q6IPR1 90 aa16.04■□□□□ 0.16
CLN3-212ENST00000564574 VN1R17PQ8TDU5 208 aa16.04■□□□□ 0.16
CLN3-212ENST00000564574 ST6GAL2Q96JF0 529 aa16.04■□□□□ 0.16
CLN3-212ENST00000564574 SLC25A31Q9H0C2 315 aa16.04■□□□□ 0.16
CLN3-212ENST00000564574 TSSC4Q9Y5U2 329 aaPredicted RBP16.04■□□□□ 0.16
CLN3-212ENST00000564574 FAM24AA6NFZ4 105 aa16.03■□□□□ 0.16
CLN3-212ENST00000564574 I3L2K1 104 aa16.03■□□□□ 0.16
CLN3-212ENST00000564574 CDX1P47902 265 aaPredicted RBP16.03■□□□□ 0.16
CLN3-212ENST00000564574 KRTAP10-3P60369 221 aa16.03■□□□□ 0.16
CLN3-212ENST00000564574 C15orf32Q32M92 178 aa16.03■□□□□ 0.16
CLN3-212ENST00000564574 FAM209BQ5JX69 171 aa16.03■□□□□ 0.16
CLN3-212ENST00000564574 C12orf54Q6X4T0 127 aa16.03■□□□□ 0.16
CLN3-212ENST00000564574 LCNL1Q6ZST4 164 aa16.03■□□□□ 0.16
CLN3-212ENST00000564574 TCTE3Q8IZS6 198 aa16.03■□□□□ 0.16
CLN3-212ENST00000564574 EEF1AKMT3Q96AZ1 226 aa16.03■□□□□ 0.16
CLN3-212ENST00000564574 K7EIM0 57 aa16.02■□□□□ 0.16
CLN3-212ENST00000564574 MT-CO2P00403 227 aa16.02■□□□□ 0.16
CLN3-212ENST00000564574 GPX4P36969 197 aaPredicted RBP16.02■□□□□ 0.16
CLN3-212ENST00000564574 OPRK1P41145 380 aa16.02■□□□□ 0.16
CLN3-212ENST00000564574 CD69Q07108 199 aa16.02■□□□□ 0.16
CLN3-212ENST00000564574 STX12Q86Y82 276 aa16.02■□□□□ 0.16
CLN3-212ENST00000564574 TMEM252Q8N6L7 170 aa16.02■□□□□ 0.16
CLN3-212ENST00000564574 DCUN1D4Q92564 292 aa16.02■□□□□ 0.16
CLN3-212ENST00000564574 PINX1Q96BK5 328 aaKnown RBP16.02■□□□□ 0.16
CLN3-212ENST00000564574 ATP6V0BQ99437 205 aa16.02■□□□□ 0.16
CLN3-212ENST00000564574 CITED1Q99966 193 aa16.02■□□□□ 0.16
CLN3-212ENST00000564574 ZNF747Q9BV97 191 aa16.02■□□□□ 0.16
CLN3-212ENST00000564574 TRBV7-1A0A0A6YYK4 115 aa16.01■□□□□ 0.15
CLN3-212ENST00000564574 PMS2P5A8MQ11 134 aa16.01■□□□□ 0.15
CLN3-212ENST00000564574 G3V3Q6 166 aa16.01■□□□□ 0.15
CLN3-212ENST00000564574 METTL15P1P0C7V9 234 aa16.01■□□□□ 0.15
CLN3-212ENST00000564574 SULT1A1P50225 295 aa16.01■□□□□ 0.15
CLN3-212ENST00000564574 DEFA5Q01523 94 aa16.01■□□□□ 0.15
CLN3-212ENST00000564574 Q5BKY6 102 aa16.01■□□□□ 0.15
CLN3-212ENST00000564574 KHDC1LQ5JSQ8 128 aa16.01■□□□□ 0.15
CLN3-212ENST00000564574 C11orf44Q8N8P7 122 aa16.01■□□□□ 0.15
CLN3-212ENST00000564574 OR10P1Q8NGE3 313 aa16.01■□□□□ 0.15
CLN3-212ENST00000564574 SCARB1Q8WTV0 552 aa16.01■□□□□ 0.15
CLN3-212ENST00000564574 CACNG8Q8WXS5 425 aa16.01■□□□□ 0.15
CLN3-212ENST00000564574 CITED2Q99967 270 aaPredicted RBP16.01■□□□□ 0.15
CLN3-212ENST00000564574 IGSF23A1L1A6 192 aa16■□□□□ 0.15
CLN3-212ENST00000564574 PRSS46E5RG02 174 aa16■□□□□ 0.15
CLN3-212ENST00000564574 BAXQ07812 192 aa16■□□□□ 0.15
CLN3-212ENST00000564574 TXN2Q99757 166 aa16■□□□□ 0.15
CLN3-212ENST00000564574 FNDC4Q9H6D8 234 aaPredicted RBP16■□□□□ 0.15
CLN3-212ENST00000564574 C21orf62Q9NYP8 219 aa16■□□□□ 0.15
CLN3-212ENST00000564574 MFSD2BA6NFX1 497 aa15.99■□□□□ 0.15
CLN3-212ENST00000564574 LGALS1P09382 135 aaKnown RBP15.99■□□□□ 0.15
CLN3-212ENST00000564574 FCGR2BP31994 310 aaPredicted RBP15.99■□□□□ 0.15
CLN3-212ENST00000564574 NUP62P37198 522 aaPredicted RBP15.99■□□□□ 0.15
CLN3-212ENST00000564574 MFAP4P55083 255 aa15.99■□□□□ 0.15
CLN3-212ENST00000564574 OR8G2PQ6IF36 304 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms