RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 GAB2Q9UQC2 676 aa4.4□□□□□ -1.71
VPS13C-209ENST00000560637 H0YIZ8 118 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 UPK2O00526 184 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 IGFBP2P18065 325 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 BPIFB3P59826 476 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 UBE2L3P68036 154 aaKnown RBP4.39□□□□□ -1.71
VPS13C-209ENST00000560637 SRSF1Q07955 248 aaKnown RBP eCLIP4.39□□□□□ -1.71
VPS13C-209ENST00000560637 C5orf64Q2M2E5 130 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 MIDNQ504T8 468 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 ZNF585BQ52M93 769 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 TEPPQ6URK8 271 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 Q6ZPA2 131 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 LYPD6Q86Y78 171 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 Q8N7P7 452 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 TVP23CQ96ET8 276 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 GALNT14Q96FL9 552 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 NAGKQ9UJ70 344 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 TIMM9Q9Y5J7 89 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 URGCP-MRPS24S4R325 110 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 COL6A5A8TX70 2615 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 ATP6V0E1O15342 81 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 DEDDO75618 318 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 RD3LP0DJH9 198 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 HOXB4P17483 251 aaPredicted RBP4.39□□□□□ -1.71
VPS13C-209ENST00000560637 NAT1P18440 290 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 ATP5G2Q06055 141 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 SLC16A13Q7RTY0 426 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 CLRN3Q8NCR9 226 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 MALSU1Q96EH3 234 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 TBX15Q96SF7 602 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 ACTR3CQ9C0K3 210 aaPredicted RBP4.39□□□□□ -1.71
VPS13C-209ENST00000560637 U3KQ87 197 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 NACAE9PAV3 2078 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 TEX50A0A1B0GTY4 177 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 MAP1LC3B2A6NCE7 125 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 CFDP00746 253 aaPredicted RBP4.39□□□□□ -1.71
VPS13C-209ENST00000560637 FABP1P07148 127 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 CDC34P49427 236 aaPredicted RBP4.39□□□□□ -1.71
VPS13C-209ENST00000560637 NDPQ00604 133 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 ADIRFQ15847 76 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 C15orf32Q32M92 178 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 GCSAMLQ5JQS6 135 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 LY6G6FQ5SQ64 297 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 C11orf71Q6IPW1 123 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 C16orf82Q7Z2V1 217 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 BEND2Q8NDZ0 799 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 OR4X2Q8NGF9 303 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 GNPNAT1Q96EK6 184 aaPredicted RBP4.39□□□□□ -1.71
VPS13C-209ENST00000560637 MAP1LC3BQ9GZQ8 125 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 KAAG1Q9UBP8 84 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 MOB4Q9Y3A3 225 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 PXMP4Q9Y6I8 212 aa4.39□□□□□ -1.71
VPS13C-209ENST00000560637 TCRBV4S1A1TA0A5B7 111 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 SPINK4O60575 86 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 OR2C1O95371 312 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 AMY1AP04745 511 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 PRSS8Q16651 343 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 DEFB136Q30KP8 78 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 ETFRF1Q6IPR1 90 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 SSX7Q7RTT5 188 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 TCTE3Q8IZS6 198 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 NECAP1Q8NC96 275 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 OR4B1Q8NGF8 309 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 OR5R1Q8NH85 324 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 CORO2AQ92828 525 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 ATP5SQ99766 215 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 TMEM208Q9BTX3 173 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 NPVFQ9HCQ7 196 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 C21orf62Q9NYP8 219 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 CPAMD8Q8IZJ3 1885 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 TRAV41A0A0B4J266 112 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 C15orf61A6NNL5 157 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 P2RY1P47900 373 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 MFAP4P55083 255 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 UBE2G1P62253 170 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 C3orf56Q8N813 242 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 OR1L4Q8NGR5 311 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 C8orf46Q8TAG6 207 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 RPS10P5Q9NQ39 176 aa4.38□□□□□ -1.71
VPS13C-209ENST00000560637 KMT2BQ9UMN6 2715 aaPredicted RBP4.38□□□□□ -1.71
VPS13C-209ENST00000560637 ASH1LQ9NR48 2969 aaKnown RBP4.38□□□□□ -1.71
VPS13C-209ENST00000560637 TMSB15BA0A087X1C1 80 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 PSMB11A5LHX3 300 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 AP4M1O00189 453 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 AVPP01185 164 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 IGKV1-39P01597 117 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 IGKV1D-39P04432 117 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 SLC25A5P05141 298 aaKnown RBP4.37□□□□□ -1.71
VPS13C-209ENST00000560637 PSMB3P49720 205 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 TIGITQ495A1 244 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 ZNF767PQ75MW2 155 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 TCF23Q7RTU1 214 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 DYNAPQ8N1N2 210 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.37□□□□□ -1.71
VPS13C-209ENST00000560637 KLHL30-AS1Q8NEE0 82 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 OR5B3Q8NH48 314 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 TNFSF18Q9UNG2 199 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 SPP1P10451 314 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 TAS2R45P59539 299 aa4.37□□□□□ -1.71
VPS13C-209ENST00000560637 SUMO1P63165 101 aaKnown RBP4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms