RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 GOSR2O14653 212 aa16.78■□□□□ 0.28
SNX1-210ENST00000560260 SNCAP37840 140 aa16.78■□□□□ 0.28
SNX1-210ENST00000560260 MYCNOSP40205 109 aa16.78■□□□□ 0.28
SNX1-210ENST00000560260 POLR2GP62487 172 aaKnown RBP eCLIP16.78■□□□□ 0.28
SNX1-210ENST00000560260 SLC24A4Q8NFF2 622 aa16.78■□□□□ 0.28
SNX1-210ENST00000560260 OR1L6Q8NGR2 347 aa16.78■□□□□ 0.28
SNX1-210ENST00000560260 OR1N2Q8NGR9 330 aa16.78■□□□□ 0.28
SNX1-210ENST00000560260 MISP3Q96FF7 219 aa16.78■□□□□ 0.28
SNX1-210ENST00000560260 C5orf51A6NDU8 294 aa16.77■□□□□ 0.28
SNX1-210ENST00000560260 I3L2K1 104 aa16.77■□□□□ 0.28
SNX1-210ENST00000560260 SIX6O95475 246 aa16.77■□□□□ 0.28
SNX1-210ENST00000560260 PF4P02776 101 aa16.77■□□□□ 0.28
SNX1-210ENST00000560260 HTR2BP41595 481 aa16.77■□□□□ 0.28
SNX1-210ENST00000560260 NKX2-1P43699 371 aaPredicted RBP16.77■□□□□ 0.28
SNX1-210ENST00000560260 LINC00482Q8N8I6 264 aa16.77■□□□□ 0.28
SNX1-210ENST00000560260 ZNF502Q8TBZ5 544 aa16.77■□□□□ 0.28
SNX1-210ENST00000560260 GSKIPQ9P0R6 139 aa16.77■□□□□ 0.28
SNX1-210ENST00000560260 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP16.76■□□□□ 0.27
SNX1-210ENST00000560260 SYNGR2O43760 224 aa16.76■□□□□ 0.27
SNX1-210ENST00000560260 SCGB1D2O95969 90 aa16.76■□□□□ 0.27
SNX1-210ENST00000560260 C2orf83Q53S99 150 aa16.76■□□□□ 0.27
SNX1-210ENST00000560260 SCARB1Q8WTV0 552 aa16.76■□□□□ 0.27
SNX1-210ENST00000560260 C2orf50Q96LR7 162 aa16.76■□□□□ 0.27
SNX1-210ENST00000560260 THYN1Q9P016 225 aa16.76■□□□□ 0.27
SNX1-210ENST00000560260 RCL1Q9Y2P8 373 aaKnown RBP16.76■□□□□ 0.27
SNX1-210ENST00000560260 F8W735 103 aaPredicted RBP16.75■□□□□ 0.27
SNX1-210ENST00000560260 BMPR1BO00238 502 aa16.75■□□□□ 0.27
SNX1-210ENST00000560260 CYB5BO43169 146 aa16.75■□□□□ 0.27
SNX1-210ENST00000560260 TMEM50AO95807 157 aa16.75■□□□□ 0.27
SNX1-210ENST00000560260 MT-CO2P00403 227 aa16.75■□□□□ 0.27
SNX1-210ENST00000560260 IGHV3-48P01763 117 aa16.75■□□□□ 0.27
SNX1-210ENST00000560260 MBPP02686 304 aaPredicted RBP16.75■□□□□ 0.27
SNX1-210ENST00000560260 HSPB1P04792 205 aaKnown RBP16.75■□□□□ 0.27
SNX1-210ENST00000560260 NPY1RP25929 384 aa16.75■□□□□ 0.27
SNX1-210ENST00000560260 SLURP1P55000 103 aa16.75■□□□□ 0.27
SNX1-210ENST00000560260 ZNF616Q08AN1 781 aa16.75■□□□□ 0.27
SNX1-210ENST00000560260 IL15RAQ13261 267 aa16.75■□□□□ 0.27
SNX1-210ENST00000560260 GSG1LQ6UXU4 331 aa16.75■□□□□ 0.27
SNX1-210ENST00000560260 VN1R17PQ8TDU5 208 aa16.75■□□□□ 0.27
SNX1-210ENST00000560260 EEF1AKMT3Q96AZ1 226 aa16.75■□□□□ 0.27
SNX1-210ENST00000560260 PINX1Q96BK5 328 aaKnown RBP16.75■□□□□ 0.27
SNX1-210ENST00000560260 WDR89Q96FK6 387 aaPredicted RBP16.75■□□□□ 0.27
SNX1-210ENST00000560260 HIPK2Q9H2X6 1198 aa16.75■□□□□ 0.27
SNX1-210ENST00000560260 FNDC4Q9H6D8 234 aaPredicted RBP16.75■□□□□ 0.27
SNX1-210ENST00000560260 PEF1Q9UBV8 284 aaKnown RBP16.75■□□□□ 0.27
SNX1-210ENST00000560260 C15orf62A8K5M9 175 aa16.74■□□□□ 0.27
SNX1-210ENST00000560260 PPP5D1E7EU14 171 aa16.74■□□□□ 0.27
SNX1-210ENST00000560260 LINC01619G3V211 115 aa16.74■□□□□ 0.27
SNX1-210ENST00000560260 WRBO00258 174 aa16.74■□□□□ 0.27
SNX1-210ENST00000560260 SSNA1O43805 119 aa16.74■□□□□ 0.27
SNX1-210ENST00000560260 MED6O75586 246 aa16.74■□□□□ 0.27
SNX1-210ENST00000560260 TREML4Q6UXN2 200 aa16.74■□□□□ 0.27
SNX1-210ENST00000560260 CLEC19AQ6UXS0 136 aa16.74■□□□□ 0.27
SNX1-210ENST00000560260 CXorf58Q96LI9 332 aa16.74■□□□□ 0.27
SNX1-210ENST00000560260 OR4C12Q96R67 309 aa16.74■□□□□ 0.27
SNX1-210ENST00000560260 SSSCA1O60232 199 aa16.73■□□□□ 0.27
SNX1-210ENST00000560260 SUB1P53999 127 aaKnown RBP eCLIP16.73■□□□□ 0.27
SNX1-210ENST00000560260 PAX9P55771 341 aa16.73■□□□□ 0.27
SNX1-210ENST00000560260 MLANAQ16655 118 aa16.73■□□□□ 0.27
SNX1-210ENST00000560260 RANGRFQ9HD47 186 aaPredicted RBP16.73■□□□□ 0.27
SNX1-210ENST00000560260 MRPL36Q9P0J6 103 aaKnown RBP16.73■□□□□ 0.27
SNX1-210ENST00000560260 H3BP45 60 aa16.72■□□□□ 0.27
SNX1-210ENST00000560260 K7EPK0 472 aa16.72■□□□□ 0.27
SNX1-210ENST00000560260 IFNA10P01566 189 aa16.72■□□□□ 0.27
SNX1-210ENST00000560260 H2BFSP57053 126 aa16.72■□□□□ 0.27
SNX1-210ENST00000560260 DPF1Q92782 380 aa16.72■□□□□ 0.27
SNX1-210ENST00000560260 C21orf62Q9NYP8 219 aa16.72■□□□□ 0.27
SNX1-210ENST00000560260 MGAT4CQ9UBM8 478 aa16.72■□□□□ 0.27
SNX1-210ENST00000560260 U3KQ87 197 aa16.72■□□□□ 0.27
SNX1-210ENST00000560260 TRBV7-1A0A0A6YYK4 115 aa16.71■□□□□ 0.27
SNX1-210ENST00000560260 OR8U8P0C7N1 319 aa16.71■□□□□ 0.27
SNX1-210ENST00000560260 HOXD3P31249 432 aaPredicted RBP16.71■□□□□ 0.27
SNX1-210ENST00000560260 GPR183P32249 361 aa16.71■□□□□ 0.27
SNX1-210ENST00000560260 DLX4Q92988 240 aaPredicted RBP16.71■□□□□ 0.27
SNX1-210ENST00000560260 CIB3Q96Q77 187 aaPredicted RBP16.71■□□□□ 0.27
SNX1-210ENST00000560260 C11orf1Q9H5F2 150 aa16.71■□□□□ 0.27
SNX1-210ENST00000560260 ZC4H2Q9NQZ6 224 aa16.71■□□□□ 0.27
SNX1-210ENST00000560260 CORTO00230 105 aa16.7■□□□□ 0.26
SNX1-210ENST00000560260 DCUN1D4Q92564 292 aa16.7■□□□□ 0.26
SNX1-210ENST00000560260 ZNF414Q96IQ9 312 aa16.7■□□□□ 0.26
SNX1-210ENST00000560260 LSM5Q9Y4Y9 91 aaKnown RBP16.7■□□□□ 0.26
SNX1-210ENST00000560260 OR2T8A6NH00 312 aa16.7■□□□□ 0.26
SNX1-210ENST00000560260 CLEC3BP05452 202 aa16.7■□□□□ 0.26
SNX1-210ENST00000560260 ARL3P36405 182 aa16.7■□□□□ 0.26
SNX1-210ENST00000560260 OPRK1P41145 380 aa16.7■□□□□ 0.26
SNX1-210ENST00000560260 RAB32Q13637 225 aa16.7■□□□□ 0.26
SNX1-210ENST00000560260 FCN2Q15485 313 aa16.7■□□□□ 0.26
SNX1-210ENST00000560260 WFDC9Q8NEX5 89 aa16.7■□□□□ 0.26
SNX1-210ENST00000560260 RNASEH2CQ8TDP1 164 aaKnown RBP16.7■□□□□ 0.26
SNX1-210ENST00000560260 TGOLN2O43493 480 aa16.69■□□□□ 0.26
SNX1-210ENST00000560260 CXCL3P19876 107 aa16.69■□□□□ 0.26
SNX1-210ENST00000560260 FCGR2BP31994 310 aaPredicted RBP16.69■□□□□ 0.26
SNX1-210ENST00000560260 ADMP35318 185 aa16.69■□□□□ 0.26
SNX1-210ENST00000560260 SPANXN5Q5MJ07 72 aa16.69■□□□□ 0.26
SNX1-210ENST00000560260 UBAC2Q8NBM4 344 aa16.69■□□□□ 0.26
SNX1-210ENST00000560260 OR11H7Q8NGC8 314 aa16.69■□□□□ 0.26
SNX1-210ENST00000560260 SMIM8Q96KF7 97 aa16.69■□□□□ 0.26
SNX1-210ENST00000560260 CHRDL1Q9BU40 450 aa16.69■□□□□ 0.26
SNX1-210ENST00000560260 PSENENQ9NZ42 101 aa16.69■□□□□ 0.26
SNX1-210ENST00000560260 PRSS46E5RG02 174 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms