RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 ZNF124Q15973 351 aa6.72□□□□□ -1.33
HDDC3-204ENST00000559834 TMEM41BQ5BJD5 291 aa6.72□□□□□ -1.33
HDDC3-204ENST00000559834 TMEM69Q5SWH9 247 aa6.72□□□□□ -1.33
HDDC3-204ENST00000559834 MRPS26Q9BYN8 205 aaKnown RBP6.72□□□□□ -1.33
HDDC3-204ENST00000559834 TMEM231Q9H6L2 316 aa6.72□□□□□ -1.33
HDDC3-204ENST00000559834 RNF167Q9H6Y7 350 aa6.72□□□□□ -1.33
HDDC3-204ENST00000559834 IGHV3OR16-13A0A075B7E8 117 aa6.71□□□□□ -1.34
HDDC3-204ENST00000559834 IGHV3-74A0A0B4J1X5 117 aa6.71□□□□□ -1.34
HDDC3-204ENST00000559834 A0A1W2PS18 150 aa6.71□□□□□ -1.34
HDDC3-204ENST00000559834 IGLL5B9A064 214 aa6.71□□□□□ -1.34
HDDC3-204ENST00000559834 TNFAIP8O95379 198 aa6.71□□□□□ -1.34
HDDC3-204ENST00000559834 NPPCP23582 126 aa6.71□□□□□ -1.34
HDDC3-204ENST00000559834 SNCAP37840 140 aa6.71□□□□□ -1.34
HDDC3-204ENST00000559834 SUB1P53999 127 aaKnown RBP eCLIP6.71□□□□□ -1.34
HDDC3-204ENST00000559834 DEFB131AP59861 70 aa6.71□□□□□ -1.34
HDDC3-204ENST00000559834 HSPE1P61604 102 aaKnown RBP6.71□□□□□ -1.34
HDDC3-204ENST00000559834 PRCDQ00LT1 54 aa6.71□□□□□ -1.34
HDDC3-204ENST00000559834 CNPY1Q3B7I2 92 aa6.71□□□□□ -1.34
HDDC3-204ENST00000559834 PHLDA2Q53GA4 152 aa6.71□□□□□ -1.34
HDDC3-204ENST00000559834 UBE2NLQ5JXB2 153 aa6.71□□□□□ -1.34
HDDC3-204ENST00000559834 TOMM20LQ6UXN7 152 aa6.71□□□□□ -1.34
HDDC3-204ENST00000559834 ZNF600Q6ZNG1 722 aa6.71□□□□□ -1.34
HDDC3-204ENST00000559834 STHQ8IWL8 128 aa6.71□□□□□ -1.34
HDDC3-204ENST00000559834 ZNF114Q8NC26 417 aa6.71□□□□□ -1.34
HDDC3-204ENST00000559834 PINX1Q96BK5 328 aaKnown RBP6.71□□□□□ -1.34
HDDC3-204ENST00000559834 MS4A6AQ9H2W1 248 aa6.71□□□□□ -1.34
HDDC3-204ENST00000559834 HRH4Q9H3N8 390 aa6.71□□□□□ -1.34
HDDC3-204ENST00000559834 VSIRQ9H7M9 311 aa6.71□□□□□ -1.34
HDDC3-204ENST00000559834 ANAPC10Q9UM13 185 aa6.71□□□□□ -1.34
HDDC3-204ENST00000559834 SMIM31A0A1B0GVY4 71 aa6.7□□□□□ -1.34
HDDC3-204ENST00000559834 DBX1A6NMT0 343 aa6.7□□□□□ -1.34
HDDC3-204ENST00000559834 DEFB4AO15263 64 aa6.7□□□□□ -1.34
HDDC3-204ENST00000559834 SCGB2A1O75556 95 aa6.7□□□□□ -1.34
HDDC3-204ENST00000559834 IGHV3-48P01763 117 aa6.7□□□□□ -1.34
HDDC3-204ENST00000559834 HLA-DMAP28067 261 aa6.7□□□□□ -1.34
HDDC3-204ENST00000559834 HRH1P35367 487 aa6.7□□□□□ -1.34
HDDC3-204ENST00000559834 TAS2R20P59543 309 aa6.7□□□□□ -1.34
HDDC3-204ENST00000559834 TBC1D26Q86UD7 250 aa6.7□□□□□ -1.34
HDDC3-204ENST00000559834 LYSMD2Q8IV50 215 aa6.7□□□□□ -1.34
HDDC3-204ENST00000559834 SAMD12Q8N8I0 201 aa6.7□□□□□ -1.34
HDDC3-204ENST00000559834 ST8SIA2Q92186 375 aa6.7□□□□□ -1.34
HDDC3-204ENST00000559834 NARS2Q96I59 477 aaKnown RBP6.7□□□□□ -1.34
HDDC3-204ENST00000559834 SEC22AQ96IW7 307 aa6.7□□□□□ -1.34
HDDC3-204ENST00000559834 RABAC1Q9UI14 185 aa6.7□□□□□ -1.34
HDDC3-204ENST00000559834 CORTO00230 105 aa6.69□□□□□ -1.34
HDDC3-204ENST00000559834 ATG12O94817 140 aa6.69□□□□□ -1.34
HDDC3-204ENST00000559834 TMEM50AO95807 157 aa6.69□□□□□ -1.34
HDDC3-204ENST00000559834 MIFP14174 115 aa6.69□□□□□ -1.34
HDDC3-204ENST00000559834 UCP3P55916 312 aa6.69□□□□□ -1.34
HDDC3-204ENST00000559834 PRR20EP86478 221 aa6.69□□□□□ -1.34
HDDC3-204ENST00000559834 PRR20CP86479 221 aa6.69□□□□□ -1.34
HDDC3-204ENST00000559834 PRR20DP86480 221 aa6.69□□□□□ -1.34
HDDC3-204ENST00000559834 PRR20BP86481 221 aa6.69□□□□□ -1.34
HDDC3-204ENST00000559834 PRR20AP86496 221 aa6.69□□□□□ -1.34
HDDC3-204ENST00000559834 NEDD8Q15843 81 aa6.69□□□□□ -1.34
HDDC3-204ENST00000559834 LEMD1Q68G75 181 aa6.69□□□□□ -1.34
HDDC3-204ENST00000559834 MORN3Q6PF18 240 aaPredicted RBP6.69□□□□□ -1.34
HDDC3-204ENST00000559834 LILRB2Q8N423 598 aa6.69□□□□□ -1.34
HDDC3-204ENST00000559834 ZNF414Q96IQ9 312 aa6.69□□□□□ -1.34
HDDC3-204ENST00000559834 PDCD10Q9BUL8 212 aa6.69□□□□□ -1.34
HDDC3-204ENST00000559834 APLNQ9ULZ1 77 aa6.69□□□□□ -1.34
HDDC3-204ENST00000559834 PUS1Q9Y606 427 aaKnown RBP eCLIP6.69□□□□□ -1.34
HDDC3-204ENST00000559834 TRAV10A0A0B4J240 114 aa6.68□□□□□ -1.34
HDDC3-204ENST00000559834 IGHV3-66A0A0C4DH42 116 aa6.68□□□□□ -1.34
HDDC3-204ENST00000559834 INS-IGF2F8WCM5 200 aa6.68□□□□□ -1.34
HDDC3-204ENST00000559834 IFNA17P01571 189 aa6.68□□□□□ -1.34
HDDC3-204ENST00000559834 APOHP02749 345 aaPredicted RBP6.68□□□□□ -1.34
HDDC3-204ENST00000559834 SPP1P10451 314 aa6.68□□□□□ -1.34
HDDC3-204ENST00000559834 RPS19P39019 145 aaKnown RBP6.68□□□□□ -1.34
HDDC3-204ENST00000559834 RPL5P46777 297 aaKnown RBP6.68□□□□□ -1.34
HDDC3-204ENST00000559834 EIF2B2P49770 351 aaKnown RBP6.68□□□□□ -1.34
HDDC3-204ENST00000559834 LINC00336Q6ZUF6 198 aa6.68□□□□□ -1.34
HDDC3-204ENST00000559834 SLC35G3Q8N808 338 aa6.68□□□□□ -1.34
HDDC3-204ENST00000559834 TMEM230Q96A57 120 aa6.68□□□□□ -1.34
HDDC3-204ENST00000559834 MRGPRFQ96AM1 343 aa6.68□□□□□ -1.34
HDDC3-204ENST00000559834 GRAMD2BQ96HH9 432 aa6.68□□□□□ -1.34
HDDC3-204ENST00000559834 METTL26Q96S19 204 aa6.68□□□□□ -1.34
HDDC3-204ENST00000559834 FXYD6Q9H0Q3 95 aa6.68□□□□□ -1.34
HDDC3-204ENST00000559834 SCPEP1Q9HB40 452 aa6.68□□□□□ -1.34
HDDC3-204ENST00000559834 ENY2Q9NPA8 101 aa6.68□□□□□ -1.34
HDDC3-204ENST00000559834 ALMS1Q8TCU4 4167 aa6.68□□□□□ -1.34
HDDC3-204ENST00000559834 TRAV30A0A087WSZ9 112 aa6.67□□□□□ -1.34
HDDC3-204ENST00000559834 IGKV1-39P01597 117 aa6.67□□□□□ -1.34
HDDC3-204ENST00000559834 IGKV1D-39P04432 117 aa6.67□□□□□ -1.34
HDDC3-204ENST00000559834 HLA-DMBP28068 263 aa6.67□□□□□ -1.34
HDDC3-204ENST00000559834 KCTD21Q4G0X4 260 aa6.67□□□□□ -1.34
HDDC3-204ENST00000559834 Q8NAQ8 132 aa6.67□□□□□ -1.34
HDDC3-204ENST00000559834 STXBP6Q8NFX7 210 aa6.67□□□□□ -1.34
HDDC3-204ENST00000559834 GPX8Q8TED1 209 aa6.67□□□□□ -1.34
HDDC3-204ENST00000559834 RBM38Q9H0Z9 239 aaKnown RBP6.67□□□□□ -1.34
HDDC3-204ENST00000559834 ZFAND3Q9H8U3 227 aa6.67□□□□□ -1.34
HDDC3-204ENST00000559834 NDUFA13Q9P0J0 144 aa6.67□□□□□ -1.34
HDDC3-204ENST00000559834 IGHV4-28A0A0C4DH34 117 aa6.66□□□□□ -1.34
HDDC3-204ENST00000559834 A0A1B0GU03 582 aa6.66□□□□□ -1.34
HDDC3-204ENST00000559834 HELTA6NFD8 242 aa6.66□□□□□ -1.34
HDDC3-204ENST00000559834 CCDC160A6NGH7 325 aa6.66□□□□□ -1.34
HDDC3-204ENST00000559834 ZNF705EA8MWA4 302 aaPredicted RBP6.66□□□□□ -1.34
HDDC3-204ENST00000559834 K7EQG2 157 aa6.66□□□□□ -1.34
HDDC3-204ENST00000559834 CLN5O75503 358 aa6.66□□□□□ -1.34
HDDC3-204ENST00000559834 RBMY1A1P0DJD3 496 aaKnown RBP6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms