RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 RHOBP62745 196 aa10.11□□□□□ -0.79
LDLR-205ENST00000557933 SMIM21Q3B7S5 101 aa10.11□□□□□ -0.79
LDLR-205ENST00000557933 ABI3Q9P2A4 366 aa10.11□□□□□ -0.79
LDLR-205ENST00000557933 PTPRBP23467 1997 aa10.11□□□□□ -0.79
LDLR-205ENST00000557933 IQCF6A8MYZ5 107 aa10.11□□□□□ -0.79
LDLR-205ENST00000557933 HYPMO75409 117 aa10.11□□□□□ -0.79
LDLR-205ENST00000557933 REG1AP05451 166 aa10.11□□□□□ -0.79
LDLR-205ENST00000557933 CD99P14209 185 aa10.11□□□□□ -0.79
LDLR-205ENST00000557933 HNRNPA3P51991 378 aaKnown RBP10.11□□□□□ -0.79
LDLR-205ENST00000557933 RNASEKQ6P5S7 137 aaKnown RBP10.11□□□□□ -0.79
LDLR-205ENST00000557933 PMCHL2Q9BQD1 86 aa10.11□□□□□ -0.79
LDLR-205ENST00000557933 ENY2Q9NPA8 101 aa10.11□□□□□ -0.79
LDLR-205ENST00000557933 MRPS18CQ9Y3D5 142 aaKnown RBP10.11□□□□□ -0.79
LDLR-205ENST00000557933 PIGBOS1A0A0B4J2F0 54 aa10.1□□□□□ -0.79
LDLR-205ENST00000557933 SRRM4A7MD48 611 aaKnown RBP10.1□□□□□ -0.79
LDLR-205ENST00000557933 NDUFB8O95169 186 aa10.1□□□□□ -0.79
LDLR-205ENST00000557933 DLX1P56177 255 aa10.1□□□□□ -0.79
LDLR-205ENST00000557933 RANP62826 216 aaKnown RBP10.1□□□□□ -0.79
LDLR-205ENST00000557933 GABRA6Q16445 453 aa10.1□□□□□ -0.79
LDLR-205ENST00000557933 IBA57Q5T440 356 aaKnown RBP10.1□□□□□ -0.79
LDLR-205ENST00000557933 Q71RC1 249 aaPredicted RBP10.1□□□□□ -0.79
LDLR-205ENST00000557933 OR52E5Q8NH55 327 aa10.1□□□□□ -0.79
LDLR-205ENST00000557933 CDC42EP3Q9UKI2 254 aa10.1□□□□□ -0.79
LDLR-205ENST00000557933 CCL11P51671 97 aa10.1□□□□□ -0.79
LDLR-205ENST00000557933 MFAP2P55001 183 aa10.1□□□□□ -0.79
LDLR-205ENST00000557933 RNF151Q2KHN1 245 aa10.1□□□□□ -0.79
LDLR-205ENST00000557933 CT45A1Q5HYN5 189 aa10.1□□□□□ -0.79
LDLR-205ENST00000557933 TMEM164Q5U3C3 297 aa10.1□□□□□ -0.79
LDLR-205ENST00000557933 TMEM136Q6ZRR5 245 aa10.1□□□□□ -0.79
LDLR-205ENST00000557933 FAM214BQ7L5A3 538 aa10.1□□□□□ -0.79
LDLR-205ENST00000557933 ZBTB34Q8NCN2 500 aa10.1□□□□□ -0.79
LDLR-205ENST00000557933 CT45A3Q8NHU0 189 aa10.1□□□□□ -0.79
LDLR-205ENST00000557933 RNASE8Q8TDE3 154 aaKnown RBP10.1□□□□□ -0.79
LDLR-205ENST00000557933 HES4Q9HCC6 221 aa10.1□□□□□ -0.79
LDLR-205ENST00000557933 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.1□□□□□ -0.79
LDLR-205ENST00000557933 E7EUB6 86 aa10.1□□□□□ -0.79
LDLR-205ENST00000557933 USF1P22415 310 aaPredicted RBP10.1□□□□□ -0.79
LDLR-205ENST00000557933 SELENOTP62341 195 aa10.1□□□□□ -0.79
LDLR-205ENST00000557933 TNXAQ16473 311 aa10.1□□□□□ -0.79
LDLR-205ENST00000557933 TIGITQ495A1 244 aa10.1□□□□□ -0.79
LDLR-205ENST00000557933 BLNKQ8WV28 456 aa10.1□□□□□ -0.79
LDLR-205ENST00000557933 OR2V2Q96R30 315 aa10.1□□□□□ -0.79
LDLR-205ENST00000557933 C20orf144Q9BQM9 153 aa10.1□□□□□ -0.79
LDLR-205ENST00000557933 CLEC7AQ9BXN2 247 aa10.1□□□□□ -0.79
LDLR-205ENST00000557933 TECRQ9NZ01 308 aaKnown RBP10.1□□□□□ -0.79
LDLR-205ENST00000557933 LSM4Q9Y4Z0 139 aaKnown RBP10.1□□□□□ -0.79
LDLR-205ENST00000557933 KLRC4-KLRK1H3BQV0 150 aa10.09□□□□□ -0.79
LDLR-205ENST00000557933 TNFSF15O95150 251 aa10.09□□□□□ -0.79
LDLR-205ENST00000557933 WT1P19544 449 aaPredicted RBP10.09□□□□□ -0.79
LDLR-205ENST00000557933 ZNF137PP52743 207 aa10.09□□□□□ -0.79
LDLR-205ENST00000557933 PAFAH1B2P68402 229 aa10.09□□□□□ -0.79
LDLR-205ENST00000557933 NIT1Q86X76 327 aa10.09□□□□□ -0.79
LDLR-205ENST00000557933 SLC35E1Q96K37 410 aa10.09□□□□□ -0.79
LDLR-205ENST00000557933 CXXC4Q9H2H0 198 aa10.09□□□□□ -0.79
LDLR-205ENST00000557933 DPRXA6NFQ7 191 aa10.09□□□□□ -0.79
LDLR-205ENST00000557933 ZNF138P52744 262 aa10.09□□□□□ -0.79
LDLR-205ENST00000557933 LINC00173Q6ZV60 143 aa10.09□□□□□ -0.79
LDLR-205ENST00000557933 SPATA12Q7Z6I5 190 aa10.09□□□□□ -0.79
LDLR-205ENST00000557933 GCSAMQ8N6F7 178 aa10.09□□□□□ -0.79
LDLR-205ENST00000557933 FAM216BQ8N7L0 139 aa10.09□□□□□ -0.79
LDLR-205ENST00000557933 C9orf106Q8NAJ2 232 aa10.09□□□□□ -0.79
LDLR-205ENST00000557933 OR2D3Q8NGH3 330 aa10.09□□□□□ -0.79
LDLR-205ENST00000557933 RAB1CQ92928 201 aa10.09□□□□□ -0.79
LDLR-205ENST00000557933 OR51B2Q9Y5P1 312 aa10.09□□□□□ -0.79
LDLR-205ENST00000557933 SPTAN1Q13813 2472 aaKnown RBP10.08□□□□□ -0.8
LDLR-205ENST00000557933 J3QR06 171 aa10.08□□□□□ -0.8
LDLR-205ENST00000557933 CCL25O15444 150 aa10.08□□□□□ -0.8
LDLR-205ENST00000557933 FTH1P19P0C7X4 201 aa10.08□□□□□ -0.8
LDLR-205ENST00000557933 LINC00869P0C866 280 aa10.08□□□□□ -0.8
LDLR-205ENST00000557933 LOXL3P58215 753 aa10.08□□□□□ -0.8
LDLR-205ENST00000557933 GDF5OSQ5U4N7 250 aa10.08□□□□□ -0.8
LDLR-205ENST00000557933 LEMD1Q68G75 181 aa10.08□□□□□ -0.8
LDLR-205ENST00000557933 C1orf174Q8IYL3 243 aa10.08□□□□□ -0.8
LDLR-205ENST00000557933 TSKUQ8WUA8 353 aa10.08□□□□□ -0.8
LDLR-205ENST00000557933 CALYQ9NYX4 217 aa10.08□□□□□ -0.8
LDLR-205ENST00000557933 KLF13Q9Y2Y9 288 aaPredicted RBP10.08□□□□□ -0.8
LDLR-205ENST00000557933 CUBNO60494 3623 aa10.08□□□□□ -0.8
LDLR-205ENST00000557933 SNAI2O43623 268 aa10.08□□□□□ -0.8
LDLR-205ENST00000557933 ZNF324O75467 553 aaPredicted RBP10.08□□□□□ -0.8
LDLR-205ENST00000557933 PTTG1IPP53801 180 aa10.08□□□□□ -0.8
LDLR-205ENST00000557933 UBE2L3P68036 154 aaKnown RBP10.08□□□□□ -0.8
LDLR-205ENST00000557933 COL5A1-AS1Q5SY13 56 aa10.08□□□□□ -0.8
LDLR-205ENST00000557933 RPRMLQ8N4K4 120 aa10.08□□□□□ -0.8
LDLR-205ENST00000557933 IDI2-AS1Q9NZ38 188 aa10.08□□□□□ -0.8
LDLR-205ENST00000557933 LAMTOR2Q9Y2Q5 125 aa10.08□□□□□ -0.8
LDLR-205ENST00000557933 S100A7P31151 101 aa10.07□□□□□ -0.8
LDLR-205ENST00000557933 RUSC1-AS1Q66K80 236 aa10.07□□□□□ -0.8
LDLR-205ENST00000557933 KCNS1Q96KK3 526 aa10.07□□□□□ -0.8
LDLR-205ENST00000557933 CCL13Q99616 98 aa10.07□□□□□ -0.8
LDLR-205ENST00000557933 SFXN3Q9BWM7 321 aa10.07□□□□□ -0.8
LDLR-205ENST00000557933 SLC35D1Q9NTN3 355 aa10.07□□□□□ -0.8
LDLR-205ENST00000557933 C15orf61A6NNL5 157 aa10.07□□□□□ -0.8
LDLR-205ENST00000557933 NKX2-8O15522 239 aa10.07□□□□□ -0.8
LDLR-205ENST00000557933 APCSP02743 223 aa10.07□□□□□ -0.8
LDLR-205ENST00000557933 IGLC2P0DOY2 106 aa10.07□□□□□ -0.8
LDLR-205ENST00000557933 IGLC3P0DOY3 106 aa10.07□□□□□ -0.8
LDLR-205ENST00000557933 DIAPH2-AS1Q14236 149 aa10.07□□□□□ -0.8
LDLR-205ENST00000557933 TCF24Q7RTU0 167 aa10.07□□□□□ -0.8
LDLR-205ENST00000557933 WDR31Q8NA23 367 aa10.07□□□□□ -0.8
LDLR-205ENST00000557933 M0R1B8 84 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms