RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005		A0A1B0GWJ7	208 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	TMEM50A	O95807	157 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	LIPF	P07098	398 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	GPX1	P07203	203 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	EVI2A	P22794	236 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	DUT	P33316	252 aa	Known RBP	4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	HIST1H1A	Q02539	215 aa	Predicted RBP	4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	REL	Q04864	619 aa	Predicted RBP	4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	UBE2V1	Q13404	147 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	PMS2CL	Q68D20	193 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	WDR82	Q6UXN9	313 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	MRPL52	Q86TS9	123 aa	Known RBP	4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	STXBP6	Q8NFX7	210 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	DPF1	Q92782	380 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	FOXC2	Q99958	501 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	INSIG2	Q9Y5U4	225 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	COX11	Q9Y6N1	276 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	LOC107984156	A0A0G2JMH3	177 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	PRRG2	O14669	202 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	GOSR1	O95249	250 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	IGKV1-39	P01597	117 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	IGKV1D-39	P04432	117 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	PSG9	Q00887	426 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	ARL17A	Q8IVW1	177 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	ZNF414	Q96IQ9	312 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	RCHY1	Q96PM5	261 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	PFN1	P07737	140 aa	Known RBP	4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	PSG7	Q13046	419 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	RIPPLY2	Q5TAB7	128 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	TMEM42	Q69YG0	159 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	SPOCK3	Q9BQ16	436 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	SLC25A33	Q9BSK2	321 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	OSTC	Q9NRP0	149 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	DOCK3	Q8IZD9	2030 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	PPIAL4E	A0A075B759	164 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	OR2T8	A6NH00	312 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	C15orf62	A8K5M9	175 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	NUPR1	O60356	82 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	PPIAL4F	P0DN26	164 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	ZNF138	P52744	262 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	B3GALT5-AS1	P59052	145 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	SELENOT	P62341	195 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	IL15RA	Q13261	267 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	ZNF585B	Q52M93	769 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	ASCL4	Q6XD76	172 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	FOXL2NB	Q6ZUU3	175 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	FAM214B	Q7L5A3	538 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	C1orf174	Q8IYL3	243 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	FAM216B	Q8N7L0	139 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	FAM169B	Q8N8A8	192 aa		4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	RALY	Q9UKM9	306 aa	Known RBP	4.13	□□□□□ -1.75
SYNE2-223	ENST00000557005	DOCK6	Q96HP0	2047 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	C21orf140	B9A014	251 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	UPK2	O00526	184 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	STAG3L2	P0CL84	134 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	STAG3L3	P0CL85	134 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	RPL15	P61313	204 aa	Known RBP	4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	SPANXN1	Q5VSR9	72 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	MRPL14	Q6P1L8	145 aa	Known RBP	4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	TMEM108	Q6UXF1	575 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	UBALD2	Q8IYN6	164 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	OR52E5	Q8NH55	327 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	ZNF502	Q8TBZ5	544 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	CHCHD1	Q96BP2	118 aa	Known RBP	4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	C19orf24	Q9BVV8	132 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	SFXN3	Q9BWM7	321 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	TRGV8	A0A0C4DH27	118 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	ZNF503-AS2	A6NEH8	195 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	IGLV3-19	P01714	112 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	CD40	P25942	277 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	RPL13A	P40429	203 aa	Known RBP	4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	RPL27A	P46776	148 aa	Known RBP	4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	MPV17L2	Q567V2	206 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	TPTE2P1	Q5T6R2	138 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	MBNL2	Q5VZF2	373 aa	Known RBP	4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	IGKV3-7	A0A075B6H7	116 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	IGHV2OR16-5	A0A0B4J2B6	119 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	SH2D7	A6NKC9	451 aa	Predicted RBP	4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	ESD	P10768	282 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	HERVK_113	P61574	105 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	CX3CL1	P78423	397 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	SSBP2	P81877	361 aa	Predicted RBP	4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	KIR3DL3	Q8N743	410 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	IMMP1L	Q96LU5	166 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	FOXA2	Q9Y261	457 aa	Predicted RBP	4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	FANCM	Q8IYD8	2048 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	IGLV3-12	A0A075B6K2	115 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	KBTBD11-OT1	A0A1B0GTJ5	212 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	CA7	P43166	264 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	RBPMS2	Q6ZRY4	209 aa	Known RBP	4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	EPDR1	Q9UM22	224 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	TRAV8-6	A0A0B4J262	113 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	TYMS	P04818	313 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	CECR9	P0C854	216 aa		4.12	□□□□□ -1.75
SYNE2-223	ENST00000557005	TRAV17	A0A0B4J275	112 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005		A0A1W2PRE2	83 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005		C9JCJ5	164 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	NKX2-8	O15522	239 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	MLNR	O43193	412 aa		4.11	□□□□□ -1.75

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