RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 EAF1Q96JC9 268 aaPredicted RBP11.76□□□□□ -0.53
VPS33B-205ENST00000556096 SRSF8Q9BRL6 282 aaKnown RBP11.76□□□□□ -0.53
VPS33B-205ENST00000556096 PXMP4Q9Y6I8 212 aa11.76□□□□□ -0.53
VPS33B-205ENST00000556096 MAP1AP78559 2803 aaPredicted RBP11.75□□□□□ -0.53
VPS33B-205ENST00000556096 YIF1AO95070 293 aa11.75□□□□□ -0.53
VPS33B-205ENST00000556096 HSPB1P04792 205 aaKnown RBP11.75□□□□□ -0.53
VPS33B-205ENST00000556096 ICAM4Q14773 271 aa11.75□□□□□ -0.53
VPS33B-205ENST00000556096 MMDQ15546 238 aa11.75□□□□□ -0.53
VPS33B-205ENST00000556096 GUCA2BQ16661 112 aa11.75□□□□□ -0.53
VPS33B-205ENST00000556096 FAM122CQ6P4D5 195 aa11.75□□□□□ -0.53
VPS33B-205ENST00000556096 DYNAPQ8N1N2 210 aa11.75□□□□□ -0.53
VPS33B-205ENST00000556096 RAB24Q969Q5 203 aa11.75□□□□□ -0.53
VPS33B-205ENST00000556096 LOC102723971A0A1B0GUV8 181 aa11.74□□□□□ -0.53
VPS33B-205ENST00000556096 SNAPINO95295 136 aa11.74□□□□□ -0.53
VPS33B-205ENST00000556096 PLGLAQ15195 96 aa11.74□□□□□ -0.53
VPS33B-205ENST00000556096 HAGHQ16775 308 aa11.74□□□□□ -0.53
VPS33B-205ENST00000556096 TMEM249Q2WGJ8 235 aa11.74□□□□□ -0.53
VPS33B-205ENST00000556096 MIC13Q5XKP0 118 aa11.74□□□□□ -0.53
VPS33B-205ENST00000556096 NKX6-2Q9C056 277 aaPredicted RBP11.74□□□□□ -0.53
VPS33B-205ENST00000556096 SLC25A22Q9H936 323 aa11.74□□□□□ -0.53
VPS33B-205ENST00000556096 CCDC168Q8NDH2 2452 aa11.74□□□□□ -0.53
VPS33B-205ENST00000556096 IGHV4-30-2A0A087WSY4 118 aa11.74□□□□□ -0.53
VPS33B-205ENST00000556096 TEX22C9J3V5 150 aa11.74□□□□□ -0.53
VPS33B-205ENST00000556096 FCN1O00602 326 aa11.74□□□□□ -0.53
VPS33B-205ENST00000556096 IFNA1P01562 189 aa11.74□□□□□ -0.53
VPS33B-205ENST00000556096 CDC34P49427 236 aaPredicted RBP11.74□□□□□ -0.53
VPS33B-205ENST00000556096 FGF8P55075 233 aaPredicted RBP11.74□□□□□ -0.53
VPS33B-205ENST00000556096 B2MP61769 119 aa11.74□□□□□ -0.53
VPS33B-205ENST00000556096 SSBP2P81877 361 aaPredicted RBP11.74□□□□□ -0.53
VPS33B-205ENST00000556096 PRR20EP86478 221 aa11.74□□□□□ -0.53
VPS33B-205ENST00000556096 PRR20CP86479 221 aa11.74□□□□□ -0.53
VPS33B-205ENST00000556096 PRR20DP86480 221 aa11.74□□□□□ -0.53
VPS33B-205ENST00000556096 PRR20BP86481 221 aa11.74□□□□□ -0.53
VPS33B-205ENST00000556096 PRR20AP86496 221 aa11.74□□□□□ -0.53
VPS33B-205ENST00000556096 SLC16A13Q7RTY0 426 aa11.74□□□□□ -0.53
VPS33B-205ENST00000556096 Q8N6K4 173 aa11.74□□□□□ -0.53
VPS33B-205ENST00000556096 AJUBAQ96IF1 538 aa11.74□□□□□ -0.53
VPS33B-205ENST00000556096 SLC35E1Q96K37 410 aa11.74□□□□□ -0.53
VPS33B-205ENST00000556096 GNG13Q9P2W3 67 aa11.74□□□□□ -0.53
VPS33B-205ENST00000556096 SLC45A2Q9UMX9 530 aa11.74□□□□□ -0.53
VPS33B-205ENST00000556096 SRP19P09132 144 aaKnown RBP11.73□□□□□ -0.53
VPS33B-205ENST00000556096 BCL2P10415 239 aa11.73□□□□□ -0.53
VPS33B-205ENST00000556096 GNB1P62873 340 aa11.73□□□□□ -0.53
VPS33B-205ENST00000556096 MLANAQ16655 118 aa11.73□□□□□ -0.53
VPS33B-205ENST00000556096 RBMS3Q6XE24 437 aaKnown RBP11.73□□□□□ -0.53
VPS33B-205ENST00000556096 OR1P1Q8NH06 330 aa11.73□□□□□ -0.53
VPS33B-205ENST00000556096 C17orf50Q8WW18 174 aa11.73□□□□□ -0.53
VPS33B-205ENST00000556096 SRSF12Q8WXF0 261 aaKnown RBP11.73□□□□□ -0.53
VPS33B-205ENST00000556096 BEX4Q9NWD9 120 aaPredicted RBP11.73□□□□□ -0.53
VPS33B-205ENST00000556096 A0A1W2PPV4 95 aa11.72□□□□□ -0.53
VPS33B-205ENST00000556096 LINC00869P0C866 280 aa11.72□□□□□ -0.53
VPS33B-205ENST00000556096 TAGLN2P37802 199 aaKnown RBP11.72□□□□□ -0.53
VPS33B-205ENST00000556096 BTN1A1Q13410 526 aa11.72□□□□□ -0.53
VPS33B-205ENST00000556096 HES1Q14469 280 aa11.72□□□□□ -0.53
VPS33B-205ENST00000556096 C5orf64Q2M2E5 130 aa11.72□□□□□ -0.53
VPS33B-205ENST00000556096 ETFRF1Q6IPR1 90 aa11.72□□□□□ -0.53
VPS33B-205ENST00000556096 STPG3Q8N7X2 389 aa11.72□□□□□ -0.53
VPS33B-205ENST00000556096 RXFP4Q8TDU9 374 aa11.72□□□□□ -0.53
VPS33B-205ENST00000556096 SSMEM1Q8WWF3 244 aa11.72□□□□□ -0.53
VPS33B-205ENST00000556096 FNDC4Q9H6D8 234 aaPredicted RBP11.72□□□□□ -0.53
VPS33B-205ENST00000556096 VAX2Q9UIW0 290 aa11.72□□□□□ -0.53
VPS33B-205ENST00000556096 ABCA2Q9BZC7 2435 aa11.72□□□□□ -0.53
VPS33B-205ENST00000556096 TEX15Q9BXT5 2789 aa11.72□□□□□ -0.53
VPS33B-205ENST00000556096 IGKV1OR2-108A0A075B7D4 117 aa11.72□□□□□ -0.53
VPS33B-205ENST00000556096 CORTO00230 105 aa11.72□□□□□ -0.53
VPS33B-205ENST00000556096 NPFFO15130 113 aa11.72□□□□□ -0.53
VPS33B-205ENST00000556096 NDUFS6O75380 124 aaKnown RBP11.72□□□□□ -0.53
VPS33B-205ENST00000556096 TSPAN9O75954 239 aa11.72□□□□□ -0.53
VPS33B-205ENST00000556096 REG1AP05451 166 aa11.72□□□□□ -0.53
VPS33B-205ENST00000556096 CRYGCP07315 174 aa11.72□□□□□ -0.53
VPS33B-205ENST00000556096 AREGP15514 252 aa11.72□□□□□ -0.53
VPS33B-205ENST00000556096 CD24P25063 80 aa11.72□□□□□ -0.53
VPS33B-205ENST00000556096 PAX6P26367 422 aa11.72□□□□□ -0.53
VPS33B-205ENST00000556096 GCSAMLQ5JQS6 135 aa11.72□□□□□ -0.53
VPS33B-205ENST00000556096 Q5PR19 223 aa11.72□□□□□ -0.53
VPS33B-205ENST00000556096 MBD6Q96DN6 1003 aa11.72□□□□□ -0.53
VPS33B-205ENST00000556096 F11RQ9Y624 299 aaKnown RBP11.72□□□□□ -0.53
VPS33B-205ENST00000556096 PRRC2AP48634 2157 aaKnown RBP11.71□□□□□ -0.53
VPS33B-205ENST00000556096 CENPVL3A0A0U1RRI6 287 aa11.71□□□□□ -0.54
VPS33B-205ENST00000556096 ZFP92A6NM28 416 aa11.71□□□□□ -0.54
VPS33B-205ENST00000556096 FAM106CPP0CH98 169 aa11.71□□□□□ -0.54
VPS33B-205ENST00000556096 SLC25A16P16260 332 aa11.71□□□□□ -0.54
VPS33B-205ENST00000556096 OR10J1P30954 320 aa11.71□□□□□ -0.54
VPS33B-205ENST00000556096 BRS3P32247 399 aa11.71□□□□□ -0.54
VPS33B-205ENST00000556096 SAA4P35542 130 aa11.71□□□□□ -0.54
VPS33B-205ENST00000556096 CLEC12BQ2HXU8 276 aa11.71□□□□□ -0.54
VPS33B-205ENST00000556096 SOHLH1Q5JUK2 328 aa11.71□□□□□ -0.54
VPS33B-205ENST00000556096 SLC35E3Q7Z769 313 aa11.71□□□□□ -0.54
VPS33B-205ENST00000556096 OR2T6Q8NHC8 308 aa11.71□□□□□ -0.54
VPS33B-205ENST00000556096 CNIH1O95406 144 aa11.7□□□□□ -0.54
VPS33B-205ENST00000556096 PSMB3P49720 205 aa11.7□□□□□ -0.54
VPS33B-205ENST00000556096 MFAP2P55001 183 aa11.7□□□□□ -0.54
VPS33B-205ENST00000556096 KRTAP1-3Q8IUG1 177 aa11.7□□□□□ -0.54
VPS33B-205ENST00000556096 THAP8Q8NA92 274 aa11.7□□□□□ -0.54
VPS33B-205ENST00000556096 CLRN3Q8NCR9 226 aa11.7□□□□□ -0.54
VPS33B-205ENST00000556096 C19orf24Q9BVV8 132 aa11.7□□□□□ -0.54
VPS33B-205ENST00000556096 MANBALQ9NQG1 85 aa11.7□□□□□ -0.54
VPS33B-205ENST00000556096 HMGB3O15347 200 aaKnown RBP11.69□□□□□ -0.54
VPS33B-205ENST00000556096 EIF3GO75821 320 aaKnown RBP eCLIP11.69□□□□□ -0.54
VPS33B-205ENST00000556096 STAG3L2P0CL84 134 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms