RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 SPCS3P61009 180 aa15.65■□□□□ 0.1
CCDC88C-210ENST00000555995 RELQ04864 619 aaPredicted RBP15.65■□□□□ 0.1
CCDC88C-210ENST00000555995 TRIQKQ629K1 86 aa15.65■□□□□ 0.1
CCDC88C-210ENST00000555995 SELENOHQ8IZQ5 122 aaKnown RBP15.65■□□□□ 0.1
CCDC88C-210ENST00000555995 TMEM213A2RRL7 107 aa15.64■□□□□ 0.09
CCDC88C-210ENST00000555995 A8MZ25 164 aa15.64■□□□□ 0.09
CCDC88C-210ENST00000555995 NUPL2O15504 423 aaKnown RBP15.64■□□□□ 0.09
CCDC88C-210ENST00000555995 SCGB2A1O75556 95 aa15.64■□□□□ 0.09
CCDC88C-210ENST00000555995 AKR1C4P17516 323 aa15.64■□□□□ 0.09
CCDC88C-210ENST00000555995 DEFB114Q30KQ6 69 aa15.64■□□□□ 0.09
CCDC88C-210ENST00000555995 ZNF57Q68EA5 555 aaPredicted RBP15.64■□□□□ 0.09
CCDC88C-210ENST00000555995 UBAC2Q8NBM4 344 aa15.64■□□□□ 0.09
CCDC88C-210ENST00000555995 TMEM190Q8WZ59 177 aa15.64■□□□□ 0.09
CCDC88C-210ENST00000555995 SRRQ9GZT4 340 aa15.64■□□□□ 0.09
CCDC88C-210ENST00000555995 DAZ1Q9NQZ3 744 aaKnown RBP15.64■□□□□ 0.09
CCDC88C-210ENST00000555995 ZC4H2Q9NQZ6 224 aa15.64■□□□□ 0.09
CCDC88C-210ENST00000555995 MRPL27Q9P0M9 148 aaKnown RBP15.64■□□□□ 0.09
CCDC88C-210ENST00000555995 A0A0B4J2A0 478 aa15.63■□□□□ 0.09
CCDC88C-210ENST00000555995 I3L2K1 104 aa15.63■□□□□ 0.09
CCDC88C-210ENST00000555995 MT-CO2P00403 227 aa15.63■□□□□ 0.09
CCDC88C-210ENST00000555995 NPBWR1P48145 328 aa15.63■□□□□ 0.09
CCDC88C-210ENST00000555995 TMEM187Q14656 261 aa15.63■□□□□ 0.09
CCDC88C-210ENST00000555995 CD300EQ496F6 205 aaPredicted RBP15.63■□□□□ 0.09
CCDC88C-210ENST00000555995 LGI3Q8N145 548 aa15.63■□□□□ 0.09
CCDC88C-210ENST00000555995 LHFPL5Q8TAF8 219 aa15.63■□□□□ 0.09
CCDC88C-210ENST00000555995 TMEM230Q96A57 120 aa15.63■□□□□ 0.09
CCDC88C-210ENST00000555995 CACNG5Q9UF02 275 aa15.63■□□□□ 0.09
CCDC88C-210ENST00000555995 SHPKQ9UHJ6 478 aa15.63■□□□□ 0.09
CCDC88C-210ENST00000555995 IGHV3-21A0A0B4J1V1 117 aa15.62■□□□□ 0.09
CCDC88C-210ENST00000555995 A0A0G2JRQ6 117 aa15.62■□□□□ 0.09
CCDC88C-210ENST00000555995 DUXBA0A1W2PPF3 345 aa15.62■□□□□ 0.09
CCDC88C-210ENST00000555995 NAP1L6A6NFF2 107 aa15.62■□□□□ 0.09
CCDC88C-210ENST00000555995 SULT1A3P0DMM9 295 aa15.62■□□□□ 0.09
CCDC88C-210ENST00000555995 SULT1A4P0DMN0 295 aa15.62■□□□□ 0.09
CCDC88C-210ENST00000555995 TMEM128Q5BJH2 165 aa15.62■□□□□ 0.09
CCDC88C-210ENST00000555995 SPINK9Q5DT21 86 aa15.62■□□□□ 0.09
CCDC88C-210ENST00000555995 ADAMTSL5Q6ZMM2 481 aa15.62■□□□□ 0.09
CCDC88C-210ENST00000555995 UXS1Q8NBZ7 420 aa15.62■□□□□ 0.09
CCDC88C-210ENST00000555995 TRAV25A0A0B4J276 109 aa15.61■□□□□ 0.09
CCDC88C-210ENST00000555995 GNG7O60262 68 aa15.61■□□□□ 0.09
CCDC88C-210ENST00000555995 FRMD6-AS1P0C7T7 363 aa15.61■□□□□ 0.09
CCDC88C-210ENST00000555995 HTR2BP41595 481 aa15.61■□□□□ 0.09
CCDC88C-210ENST00000555995 RBMS2Q15434 407 aaKnown RBP15.61■□□□□ 0.09
CCDC88C-210ENST00000555995 UNQ9165/PRO28630Q6UXU0 137 aa15.61■□□□□ 0.09
CCDC88C-210ENST00000555995 Q8N1Y9 231 aa15.61■□□□□ 0.09
CCDC88C-210ENST00000555995 DUSP18Q8NEJ0 188 aa15.61■□□□□ 0.09
CCDC88C-210ENST00000555995 PINX1Q96BK5 328 aaKnown RBP15.61■□□□□ 0.09
CCDC88C-210ENST00000555995 C8orf88P0DMB2 117 aa15.6■□□□□ 0.09
CCDC88C-210ENST00000555995 IGHV4-30-4P0DP06 118 aa15.6■□□□□ 0.09
CCDC88C-210ENST00000555995 CCR6P51684 374 aa15.6■□□□□ 0.09
CCDC88C-210ENST00000555995 ANKRD55Q3KP44 614 aa15.6■□□□□ 0.09
CCDC88C-210ENST00000555995 TMED4Q7Z7H5 227 aa15.6■□□□□ 0.09
CCDC88C-210ENST00000555995 NOXA1Q86UR1 476 aa15.6■□□□□ 0.09
CCDC88C-210ENST00000555995 GPR146Q96CH1 333 aa15.6■□□□□ 0.09
CCDC88C-210ENST00000555995 CHRDL1Q9BU40 450 aa15.6■□□□□ 0.09
CCDC88C-210ENST00000555995 U3KQK5 164 aa15.6■□□□□ 0.09
CCDC88C-210ENST00000555995 IGHV3-35A0A0C4DH35 117 aa15.59■□□□□ 0.09
CCDC88C-210ENST00000555995 RPS10-NUDT3A0A1W2PQS6 291 aa15.59■□□□□ 0.09
CCDC88C-210ENST00000555995 C15orf62A8K5M9 175 aa15.59■□□□□ 0.09
CCDC88C-210ENST00000555995 CENPXA8MT69 81 aa15.59■□□□□ 0.09
CCDC88C-210ENST00000555995 F8W735 103 aaPredicted RBP15.59■□□□□ 0.09
CCDC88C-210ENST00000555995 K7EMT4 169 aa15.59■□□□□ 0.09
CCDC88C-210ENST00000555995 CTSGP08311 255 aa15.59■□□□□ 0.09
CCDC88C-210ENST00000555995 RNASE2P10153 161 aaKnown RBP15.59■□□□□ 0.09
CCDC88C-210ENST00000555995 UBE2MP61081 183 aaKnown RBP15.59■□□□□ 0.09
CCDC88C-210ENST00000555995 SUPT4H1P63272 117 aaKnown RBP15.59■□□□□ 0.09
CCDC88C-210ENST00000555995 GUCA2BQ16661 112 aa15.59■□□□□ 0.09
CCDC88C-210ENST00000555995 PVRIGQ6DKI7 326 aa15.59■□□□□ 0.09
CCDC88C-210ENST00000555995 C11orf87Q6NUJ2 197 aa15.59■□□□□ 0.09
CCDC88C-210ENST00000555995 Q6ZRM9 215 aa15.59■□□□□ 0.09
CCDC88C-210ENST00000555995 SLC16A13Q7RTY0 426 aa15.59■□□□□ 0.09
CCDC88C-210ENST00000555995 CACNG8Q8WXS5 425 aa15.59■□□□□ 0.09
CCDC88C-210ENST00000555995 C7orf50Q9BRJ6 194 aaKnown RBP15.59■□□□□ 0.09
CCDC88C-210ENST00000555995 HEYLQ9NQ87 328 aaPredicted RBP15.59■□□□□ 0.09
CCDC88C-210ENST00000555995 IZUMO1RA6ND01 250 aa15.58■□□□□ 0.08
CCDC88C-210ENST00000555995 CEBPZOSA8MTT3 80 aa15.58■□□□□ 0.08
CCDC88C-210ENST00000555995 ADMP35318 185 aa15.58■□□□□ 0.08
CCDC88C-210ENST00000555995 CD81P60033 236 aa15.58■□□□□ 0.08
CCDC88C-210ENST00000555995 SMCO1Q147U7 214 aa15.58■□□□□ 0.08
CCDC88C-210ENST00000555995 BSXQ3C1V8 233 aa15.58■□□□□ 0.08
CCDC88C-210ENST00000555995 TM4SF20Q53R12 229 aa15.58■□□□□ 0.08
CCDC88C-210ENST00000555995 RBPMS2Q6ZRY4 209 aaKnown RBP15.58■□□□□ 0.08
CCDC88C-210ENST00000555995 CENPSQ8N2Z9 138 aa15.58■□□□□ 0.08
CCDC88C-210ENST00000555995 C20orf24Q9BUV8 137 aa15.58■□□□□ 0.08
CCDC88C-210ENST00000555995 HIPK2Q9H2X6 1198 aa15.58■□□□□ 0.08
CCDC88C-210ENST00000555995 TUBA4BQ9H853 241 aa15.58■□□□□ 0.08
CCDC88C-210ENST00000555995 ZMAT4Q9H898 229 aa15.58■□□□□ 0.08
CCDC88C-210ENST00000555995 MLXQ9UH92 298 aa15.58■□□□□ 0.08
CCDC88C-210ENST00000555995 COL7A1Q02388 2944 aa15.58■□□□□ 0.08
CCDC88C-210ENST00000555995 VAMP1P23763 118 aa15.57■□□□□ 0.08
CCDC88C-210ENST00000555995 BMI1P35226 326 aa15.57■□□□□ 0.08
CCDC88C-210ENST00000555995 OPRK1P41145 380 aa15.57■□□□□ 0.08
CCDC88C-210ENST00000555995 NMSQ5H8A3 153 aa15.57■□□□□ 0.08
CCDC88C-210ENST00000555995 LAMTOR1Q6IAA8 161 aa15.57■□□□□ 0.08
CCDC88C-210ENST00000555995 BTNL8Q6UX41 500 aa15.57■□□□□ 0.08
CCDC88C-210ENST00000555995 TMEM61Q8N0U2 210 aa15.57■□□□□ 0.08
CCDC88C-210ENST00000555995 ASCL2Q99929 193 aa15.57■□□□□ 0.08
CCDC88C-210ENST00000555995 NEURL2Q9BR09 285 aa15.57■□□□□ 0.08
CCDC88C-210ENST00000555995 GINS3Q9BRX5 216 aa15.57■□□□□ 0.08
CCDC88C-210ENST00000555995 C19orf73Q9NVV2 129 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms