RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 NAPSAO96009 420 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 REG1AP05451 166 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 SCTP09683 121 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 C3orf79P0CE67 100 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 PSG2P11465 335 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 IER3P46695 156 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 RBM11P57052 281 aaKnown RBP6.31□□□□□ -1.4
LIMA1-216ENST00000552909 PMCHL1Q16048 86 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 LRRC10Q5BKY1 277 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 OR10J3Q5JRS4 329 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 STUMQ69YW2 141 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 OR4A47Q6IF82 309 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 LRRC75A-AS1Q8N1F1 130 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 NUP37Q8NFH4 326 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 OR51H1Q8NH63 302 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 LSM10Q969L4 123 aaKnown RBP6.31□□□□□ -1.4
LIMA1-216ENST00000552909 BORCS7Q96B45 105 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 Q96MF0 132 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 UHRF2Q96PU4 802 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 IL36GQ9NZH8 169 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 ZNF391Q9UJN7 358 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 CUBNO60494 3623 aa6.31□□□□□ -1.4
LIMA1-216ENST00000552909 ABCA1O95477 2261 aa6.3□□□□□ -1.4
LIMA1-216ENST00000552909 ANK3Q12955 4377 aaKnown RBP6.3□□□□□ -1.4
LIMA1-216ENST00000552909 CTXN2P0C2S0 81 aa6.3□□□□□ -1.4
LIMA1-216ENST00000552909 ATP5G3P48201 142 aa6.3□□□□□ -1.4
LIMA1-216ENST00000552909 SRSF7Q16629 238 aaKnown RBP eCLIP6.3□□□□□ -1.4
LIMA1-216ENST00000552909 C19orf35Q6ZS72 473 aa6.3□□□□□ -1.4
LIMA1-216ENST00000552909 MRPL21Q7Z2W9 205 aaKnown RBP6.3□□□□□ -1.4
LIMA1-216ENST00000552909 PIGCQ92535 297 aa6.3□□□□□ -1.4
LIMA1-216ENST00000552909 SPSB4Q96A44 273 aa6.3□□□□□ -1.4
LIMA1-216ENST00000552909 SMR3AQ99954 134 aa6.3□□□□□ -1.4
LIMA1-216ENST00000552909 TMEM147Q9BVK8 224 aa6.3□□□□□ -1.4
LIMA1-216ENST00000552909 TMUB1Q9BVT8 246 aa6.3□□□□□ -1.4
LIMA1-216ENST00000552909 IL19Q9UHD0 177 aa6.3□□□□□ -1.4
LIMA1-216ENST00000552909 ZNF816-ZNF321PA0A0X1KG74 233 aa6.3□□□□□ -1.4
LIMA1-216ENST00000552909 KIR2DS1A0A191URI9 304 aa6.3□□□□□ -1.4
LIMA1-216ENST00000552909 hCG_38984A0A1B0GV85 526 aa6.3□□□□□ -1.4
LIMA1-216ENST00000552909 A0A1W2PS18 150 aa6.3□□□□□ -1.4
LIMA1-216ENST00000552909 ZNF324O75467 553 aaPredicted RBP6.3□□□□□ -1.4
LIMA1-216ENST00000552909 KIR2DS4P43632 304 aa6.3□□□□□ -1.4
LIMA1-216ENST00000552909 CDC34P49427 236 aaPredicted RBP6.3□□□□□ -1.4
LIMA1-216ENST00000552909 KIR2DS1Q14954 304 aa6.3□□□□□ -1.4
LIMA1-216ENST00000552909 SPATA46Q5T0L3 261 aa6.3□□□□□ -1.4
LIMA1-216ENST00000552909 NIT1Q86X76 327 aa6.3□□□□□ -1.4
LIMA1-216ENST00000552909 ZDHHC23Q8IYP9 409 aa6.3□□□□□ -1.4
LIMA1-216ENST00000552909 ATOH7Q8N100 152 aa6.3□□□□□ -1.4
LIMA1-216ENST00000552909 OR4F17Q8NGA8 305 aa6.3□□□□□ -1.4
LIMA1-216ENST00000552909 QTRT1Q9BXR0 403 aaKnown RBP6.3□□□□□ -1.4
LIMA1-216ENST00000552909 GNB1LQ9BYB4 327 aa6.3□□□□□ -1.4
LIMA1-216ENST00000552909 TRAV9-2A0A087WT02 112 aa6.29□□□□□ -1.4
LIMA1-216ENST00000552909 NDUFS8O00217 210 aa6.29□□□□□ -1.4
LIMA1-216ENST00000552909 CA2P00918 260 aa6.29□□□□□ -1.4
LIMA1-216ENST00000552909 MT-ND6P03923 174 aa6.29□□□□□ -1.4
LIMA1-216ENST00000552909 NBEAP1P0C6P0 100 aa6.29□□□□□ -1.4
LIMA1-216ENST00000552909 GLRXP35754 106 aa6.29□□□□□ -1.4
LIMA1-216ENST00000552909 THBS3P49746 956 aa6.29□□□□□ -1.4
LIMA1-216ENST00000552909 LGALS4P56470 323 aa6.29□□□□□ -1.4
LIMA1-216ENST00000552909 HTD2P86397 168 aa6.29□□□□□ -1.4
LIMA1-216ENST00000552909 PRSS57Q6UWY2 283 aa6.29□□□□□ -1.4
LIMA1-216ENST00000552909 TMEM14EPQ6UXP3 125 aa6.29□□□□□ -1.4
LIMA1-216ENST00000552909 ERASQ7Z444 233 aa6.29□□□□□ -1.4
LIMA1-216ENST00000552909 MAPK1IP1LQ8NDC0 245 aa6.29□□□□□ -1.4
LIMA1-216ENST00000552909 Q8NFD4 153 aa6.29□□□□□ -1.4
LIMA1-216ENST00000552909 ZNF430Q9H8G1 570 aaPredicted RBP6.29□□□□□ -1.4
LIMA1-216ENST00000552909 DUSP13Q9UII6 198 aa6.29□□□□□ -1.4
LIMA1-216ENST00000552909 TRBV20OR9-2A0A075B6H5 130 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 LOC102724200A0A096LPH7 203 aaPredicted RBP6.28□□□□□ -1.4
LIMA1-216ENST00000552909 LRP5LA4QPB2 252 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 B9A039 149 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 SIRPB1O00241 398 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 FUT6P51993 359 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 ARF6P62330 175 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 RHOBP62745 196 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 EFNB3Q15768 340 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 RPEL1Q2QD12 228 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 WDR73Q6P4I2 378 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 FAM58AQ8N1B3 248 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 OR4P4Q8NGL7 312 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 OCC1Q8TAD7 63 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 TNFRSF14Q92956 283 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 RCHY1Q96PM5 261 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 TXNDC17Q9BRA2 123 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 MEGF9Q9H1U4 602 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 NAT8BQ9UHF3 227 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 SLC17A3O00476 420 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 TAX1BP3O14907 124 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 IGKV1-39P01597 117 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 IGKV1-5P01602 117 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 IGKV1D-39P04432 117 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 CR1P17927 2039 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 ALKBH6Q3KRA9 238 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 TMEM42Q69YG0 159 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 LHFPL4Q7Z7J7 247 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 MMD2Q8IY49 270 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 OR52L2PQ8NGH6 319 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 RDH5Q92781 318 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 NPCDR1Q9BY65 106 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 ABCA2Q9BZC7 2435 aa6.28□□□□□ -1.4
LIMA1-216ENST00000552909 C2CD3Q4AC94 2353 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms