RNA–Protein interactions for RNA: ENST00000552199.5

RAB3IP-216, Transcript of RAB3A interacting protein, human

TSL 1 (best)

Gene RAB3IP, Length 1,905 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAB3IP-216	ENST00000552199	CXCL1	P09341	107 aa		11.26	□□□□□ -0.61
RAB3IP-216	ENST00000552199	FAM78B	Q5VT40	261 aa		11.26	□□□□□ -0.61
RAB3IP-216	ENST00000552199	C1QL4	Q86Z23	238 aa		11.26	□□□□□ -0.61
RAB3IP-216	ENST00000552199	OR11H6	Q8NGC7	330 aa		11.26	□□□□□ -0.61
RAB3IP-216	ENST00000552199	IGLC7	A0M8Q6	106 aa		11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	CLN5	O75503	358 aa		11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	TSPAN9	O75954	239 aa		11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	MT-CO2	P00403	227 aa		11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	GATA2	P23769	480 aa	Predicted RBP	11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	RPL27A	P46776	148 aa	Known RBP	11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	GNB1	P62873	340 aa		11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	TNXA	Q16473	311 aa		11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	MIR17HG	Q75NE6	70 aa		11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	MRPL41	Q8IXM3	137 aa	Known RBP	11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	ACY3	Q96HD9	319 aa		11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	RNF5	Q99942	180 aa		11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	C19orf24	Q9BVV8	132 aa		11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	FNDC4	Q9H6D8	234 aa	Predicted RBP	11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	FUT9	Q9Y231	359 aa		11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	KLF2	Q9Y5W3	355 aa	Predicted RBP	11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	ACACB	O00763	2458 aa		11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	TGIF2-C20orf24	A0A0A6YYL0	155 aa		11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	ACTL6B	O94805	426 aa		11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	CDKN1A	P38936	164 aa		11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	RPS10	P46783	165 aa	Known RBP	11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	LDLRAD2	Q5SZI1	272 aa		11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	TPTE2P1	Q5T6R2	138 aa		11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	PVRIG	Q6DKI7	326 aa		11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	OR51G1	Q8NGK1	321 aa		11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	UBTD1	Q9HAC8	227 aa		11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	METTL1	Q9UBP6	276 aa	Known RBP	11.25	□□□□□ -0.61
RAB3IP-216	ENST00000552199	VENTX	O95231	258 aa		11.24	□□□□□ -0.61
RAB3IP-216	ENST00000552199	REG1A	P05451	166 aa		11.24	□□□□□ -0.61
RAB3IP-216	ENST00000552199	OR5G3	P0C626	314 aa		11.24	□□□□□ -0.61
RAB3IP-216	ENST00000552199	HTR1D	P28221	377 aa		11.24	□□□□□ -0.61
RAB3IP-216	ENST00000552199	GPR6	P46095	362 aa	Predicted RBP	11.24	□□□□□ -0.61
RAB3IP-216	ENST00000552199	COMP	P49747	757 aa	Predicted RBP	11.24	□□□□□ -0.61
RAB3IP-216	ENST00000552199	KIAA0141	Q14154	515 aa	Predicted RBP	11.24	□□□□□ -0.61
RAB3IP-216	ENST00000552199	PPP1R27	Q86WC6	154 aa		11.24	□□□□□ -0.61
RAB3IP-216	ENST00000552199	SSX3	Q99909	188 aa		11.24	□□□□□ -0.61
RAB3IP-216	ENST00000552199	DPM3	Q9P2X0	92 aa		11.24	□□□□□ -0.61
RAB3IP-216	ENST00000552199	YTHDF2	Q9Y5A9	579 aa	Known RBP	11.24	□□□□□ -0.61
RAB3IP-216	ENST00000552199	ARHGAP32	A7KAX9	2087 aa		11.24	□□□□□ -0.61
RAB3IP-216	ENST00000552199	SPTBN1	Q01082	2364 aa	Known RBP	11.24	□□□□□ -0.61
RAB3IP-216	ENST00000552199	PLXNB1	O43157	2135 aa		11.23	□□□□□ -0.61
RAB3IP-216	ENST00000552199	TMEM8B	A6NDV4	472 aa		11.23	□□□□□ -0.61
RAB3IP-216	ENST00000552199		A6NNC1	897 aa		11.23	□□□□□ -0.61
RAB3IP-216	ENST00000552199	NDUFB4	O95168	129 aa		11.23	□□□□□ -0.61
RAB3IP-216	ENST00000552199	PRTN3	P24158	256 aa		11.23	□□□□□ -0.61
RAB3IP-216	ENST00000552199	C16orf82	Q7Z2V1	217 aa		11.23	□□□□□ -0.61
RAB3IP-216	ENST00000552199	ZNF114	Q8NC26	417 aa		11.23	□□□□□ -0.61
RAB3IP-216	ENST00000552199	NPIPB3	Q92617	1050 aa		11.23	□□□□□ -0.61
RAB3IP-216	ENST00000552199	TECR	Q9NZ01	308 aa	Known RBP	11.23	□□□□□ -0.61
RAB3IP-216	ENST00000552199	DOK5	Q9P104	306 aa		11.23	□□□□□ -0.61
RAB3IP-216	ENST00000552199	C19orf84	I3L1E1	186 aa		11.23	□□□□□ -0.61
RAB3IP-216	ENST00000552199	TIMM23	O14925	209 aa		11.23	□□□□□ -0.61
RAB3IP-216	ENST00000552199	NDUFS7	O75251	213 aa		11.23	□□□□□ -0.61
RAB3IP-216	ENST00000552199	SNRPE	P62304	92 aa	Known RBP	11.23	□□□□□ -0.61
RAB3IP-216	ENST00000552199	SSBP2	P81877	361 aa	Predicted RBP	11.23	□□□□□ -0.61
RAB3IP-216	ENST00000552199	HCP5	Q6MZN7	132 aa		11.23	□□□□□ -0.61
RAB3IP-216	ENST00000552199	THAP8	Q8NA92	274 aa		11.23	□□□□□ -0.61
RAB3IP-216	ENST00000552199	NAV3	Q8IVL0	2385 aa		11.23	□□□□□ -0.61
RAB3IP-216	ENST00000552199	PKD1L2	Q7Z442	2459 aa		11.22	□□□□□ -0.61
RAB3IP-216	ENST00000552199	C5orf52	A6NGY3	159 aa		11.22	□□□□□ -0.61
RAB3IP-216	ENST00000552199	ODF3B	A8MYP8	253 aa		11.22	□□□□□ -0.61
RAB3IP-216	ENST00000552199	S100A6	P06703	90 aa		11.22	□□□□□ -0.61
RAB3IP-216	ENST00000552199	AREG	P15514	252 aa		11.22	□□□□□ -0.61
RAB3IP-216	ENST00000552199	CEACAM3	P40198	252 aa		11.22	□□□□□ -0.61
RAB3IP-216	ENST00000552199	KLRD1	Q13241	179 aa		11.22	□□□□□ -0.61
RAB3IP-216	ENST00000552199	C1orf122	Q6ZSJ8	110 aa		11.22	□□□□□ -0.61
RAB3IP-216	ENST00000552199	DERL1	Q9BUN8	251 aa		11.22	□□□□□ -0.61
RAB3IP-216	ENST00000552199	FBXL15	Q9H469	300 aa		11.22	□□□□□ -0.61
RAB3IP-216	ENST00000552199	ARL2-SNX15	V9GYD0	113 aa		11.22	□□□□□ -0.61
RAB3IP-216	ENST00000552199	IGKV1D-37	A0A075B6S9	117 aa		11.21	□□□□□ -0.61
RAB3IP-216	ENST00000552199	TCRBV4S1A1T	A0A5B7	111 aa		11.21	□□□□□ -0.61
RAB3IP-216	ENST00000552199	PSMB11	A5LHX3	300 aa		11.21	□□□□□ -0.61
RAB3IP-216	ENST00000552199	TEX22	C9J3V5	150 aa		11.21	□□□□□ -0.61
RAB3IP-216	ENST00000552199	IGHV3-48	P01763	117 aa		11.21	□□□□□ -0.61
RAB3IP-216	ENST00000552199	CRYGC	P07315	174 aa		11.21	□□□□□ -0.61
RAB3IP-216	ENST00000552199	EFNA4	P52798	201 aa		11.21	□□□□□ -0.61
RAB3IP-216	ENST00000552199	MFAP2	P55001	183 aa		11.21	□□□□□ -0.61
RAB3IP-216	ENST00000552199	TAS2R45	P59539	299 aa		11.21	□□□□□ -0.61
RAB3IP-216	ENST00000552199	ETFRF1	Q6IPR1	90 aa		11.21	□□□□□ -0.61
RAB3IP-216	ENST00000552199	PQLC2	Q6ZP29	291 aa		11.21	□□□□□ -0.61
RAB3IP-216	ENST00000552199	TMEM37	Q8WXS4	190 aa		11.21	□□□□□ -0.61
RAB3IP-216	ENST00000552199	ANAPC16	Q96DE5	110 aa		11.21	□□□□□ -0.61
RAB3IP-216	ENST00000552199	ZNF503	Q96F45	646 aa		11.21	□□□□□ -0.61
RAB3IP-216	ENST00000552199	FAM210B	Q96KR6	192 aa		11.21	□□□□□ -0.61
RAB3IP-216	ENST00000552199	RNF2	Q99496	336 aa		11.21	□□□□□ -0.61
RAB3IP-216	ENST00000552199	TMEM167B	Q9NRX6	74 aa		11.21	□□□□□ -0.61
RAB3IP-216	ENST00000552199	MRPL36	Q9P0J6	103 aa	Known RBP	11.21	□□□□□ -0.61
RAB3IP-216	ENST00000552199	TRBV24-1	A0A075B6N3	115 aa		11.21	□□□□□ -0.62
RAB3IP-216	ENST00000552199	SCO2	A0A1W2PP80	73 aa		11.21	□□□□□ -0.62
RAB3IP-216	ENST00000552199		H7BYZ3	331 aa		11.21	□□□□□ -0.62
RAB3IP-216	ENST00000552199	KIR3DL3	Q8N743	410 aa		11.21	□□□□□ -0.62
RAB3IP-216	ENST00000552199	OR1P1	Q8NH06	330 aa		11.21	□□□□□ -0.62
RAB3IP-216	ENST00000552199	CFHR4	Q92496	578 aa		11.21	□□□□□ -0.62
RAB3IP-216	ENST00000552199	MISP3	Q96FF7	219 aa		11.21	□□□□□ -0.62
RAB3IP-216	ENST00000552199	SLC25A33	Q9BSK2	321 aa		11.21	□□□□□ -0.62
RAB3IP-216	ENST00000552199	MRPL32	Q9BYC8	188 aa	Known RBP	11.21	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms