RNA–Protein interactions for RNA: ENST00000548877.1

CDX2-202, Transcript of caudal type homeobox 2, humanhuman

TSL 3

Gene CDX2, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2-202ENST00000548877 ANKRD55Q3KP44 614 aa10.08□□□□□ -0.8
CDX2-202ENST00000548877 TMEM61Q8N0U2 210 aa10.08□□□□□ -0.8
CDX2-202ENST00000548877 LGI3Q8N145 548 aa10.08□□□□□ -0.8
CDX2-202ENST00000548877 C9orf62Q8N4C0 152 aa10.08□□□□□ -0.8
CDX2-202ENST00000548877 LRTM2Q8N967 370 aa10.08□□□□□ -0.8
CDX2-202ENST00000548877 TEX45Q8NA69 505 aa10.08□□□□□ -0.8
CDX2-202ENST00000548877 NECAP1Q8NC96 275 aa10.08□□□□□ -0.8
CDX2-202ENST00000548877 SLC5A7Q9GZV3 580 aa10.08□□□□□ -0.8
CDX2-202ENST00000548877 DUXBA0A1W2PPF3 345 aa10.07□□□□□ -0.8
CDX2-202ENST00000548877 SRRM4A7MD48 611 aaKnown RBP10.07□□□□□ -0.8
CDX2-202ENST00000548877 FAM25EA8MYX2 175 aa10.07□□□□□ -0.8
CDX2-202ENST00000548877 UBE2CO00762 179 aa10.07□□□□□ -0.8
CDX2-202ENST00000548877 MPPED1O15442 326 aa10.07□□□□□ -0.8
CDX2-202ENST00000548877 SPRY2O43597 315 aa10.07□□□□□ -0.8
CDX2-202ENST00000548877 GGCTO75223 188 aaKnown RBP10.07□□□□□ -0.8
CDX2-202ENST00000548877 SIX6O95475 246 aa10.07□□□□□ -0.8
CDX2-202ENST00000548877 SLC25A4P12235 298 aa10.07□□□□□ -0.8
CDX2-202ENST00000548877 PRSS8Q16651 343 aa10.07□□□□□ -0.8
CDX2-202ENST00000548877 NDUFA5Q16718 116 aa10.07□□□□□ -0.8
CDX2-202ENST00000548877 TTC9CQ8N5M4 171 aa10.07□□□□□ -0.8
CDX2-202ENST00000548877 ZBTB34Q8NCN2 500 aa10.07□□□□□ -0.8
CDX2-202ENST00000548877 THAP6Q8TBB0 222 aa10.07□□□□□ -0.8
CDX2-202ENST00000548877 SECTM1Q8WVN6 248 aa10.07□□□□□ -0.8
CDX2-202ENST00000548877 C2orf50Q96LR7 162 aa10.07□□□□□ -0.8
CDX2-202ENST00000548877 HARBI1Q96MB7 349 aa10.07□□□□□ -0.8
CDX2-202ENST00000548877 PKHD1P08F94 4074 aa10.06□□□□□ -0.8
CDX2-202ENST00000548877 TRAV25A0A0B4J276 109 aa10.06□□□□□ -0.8
CDX2-202ENST00000548877 IGKV1-6A0A0C4DH72 117 aa10.06□□□□□ -0.8
CDX2-202ENST00000548877 A8MWP6 167 aa10.06□□□□□ -0.8
CDX2-202ENST00000548877 L7N2F9 121 aa10.06□□□□□ -0.8
CDX2-202ENST00000548877 M0R1X1 148 aa10.06□□□□□ -0.8
CDX2-202ENST00000548877 GNRHRP30968 328 aa10.06□□□□□ -0.8
CDX2-202ENST00000548877 UBE2KP61086 200 aa10.06□□□□□ -0.8
CDX2-202ENST00000548877 PHLDA2Q53GA4 152 aa10.06□□□□□ -0.8
CDX2-202ENST00000548877 TMEM217Q8N7C4 229 aa10.06□□□□□ -0.8
CDX2-202ENST00000548877 OR11H4Q8NGC9 324 aa10.06□□□□□ -0.8
CDX2-202ENST00000548877 PHLDA1Q8WV24 401 aaPredicted RBP10.06□□□□□ -0.8
CDX2-202ENST00000548877 SRSF12Q8WXF0 261 aaKnown RBP10.06□□□□□ -0.8
CDX2-202ENST00000548877 SPIN2AQ99865 258 aa10.06□□□□□ -0.8
CDX2-202ENST00000548877 SPIN2BQ9BPZ2 258 aa10.06□□□□□ -0.8
CDX2-202ENST00000548877 TMED3Q9Y3Q3 217 aa10.06□□□□□ -0.8
CDX2-202ENST00000548877 RBM7Q9Y580 266 aaKnown RBP10.06□□□□□ -0.8
CDX2-202ENST00000548877 MUC4Q99102 2169 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 FXYD6-FXYD2A0A087WZ82 144 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 A0A0D9SG52 128 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 KIR2DL5BA0A0G2JN68 375 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 KIR2DL5BA0A0G2JPC4 375 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 C3orf85A0A1B0GTC6 90 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 TMEM213A2RRL7 107 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 G3V3Q6 166 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 SHOXO15266 292 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 APELAP0DMC3 54 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 RRASP10301 218 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 RPA2P15927 270 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 PSMB6P28072 239 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 NUP62P37198 522 aaPredicted RBP10.05□□□□□ -0.8
CDX2-202ENST00000548877 APOC4P55056 127 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 TMEM187Q14656 261 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 KLK9Q2XQG4 91 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 LAMTOR1Q6IAA8 161 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 ZNF767PQ75MW2 155 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 KIR2DL5AQ8N109 375 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 KIR2DL5BQ8NHK3 375 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 PPP1R1CQ8WVI7 109 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 IL22RA2Q969J5 263 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 RNF183Q96D59 192 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 RDH8Q9NYR8 311 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 MLXQ9UH92 298 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 KLK9Q9UKQ9 250 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 FAT2Q9NYQ8 4349 aa10.05□□□□□ -0.8
CDX2-202ENST00000548877 PPP5D1E7EU14 171 aa10.04□□□□□ -0.8
CDX2-202ENST00000548877 OR2C1O95371 312 aa10.04□□□□□ -0.8
CDX2-202ENST00000548877 PRH1P02810 166 aa10.04□□□□□ -0.8
CDX2-202ENST00000548877 RLN2P04090 185 aa10.04□□□□□ -0.8
CDX2-202ENST00000548877 OR5AC1P0C628 307 aa10.04□□□□□ -0.8
CDX2-202ENST00000548877 C8orf88P0DMB2 117 aa10.04□□□□□ -0.8
CDX2-202ENST00000548877 OR2F1Q13607 317 aa10.04□□□□□ -0.8
CDX2-202ENST00000548877 ZNF345Q14585 488 aa10.04□□□□□ -0.8
CDX2-202ENST00000548877 SMCO1Q147U7 214 aa10.04□□□□□ -0.8
CDX2-202ENST00000548877 C15orf32Q32M92 178 aa10.04□□□□□ -0.8
CDX2-202ENST00000548877 TM4SF20Q53R12 229 aa10.04□□□□□ -0.8
CDX2-202ENST00000548877 TBC1D26Q86UD7 250 aa10.04□□□□□ -0.8
CDX2-202ENST00000548877 ZNF546Q86UE3 836 aa10.04□□□□□ -0.8
CDX2-202ENST00000548877 INO80EQ8NBZ0 244 aaPredicted RBP10.04□□□□□ -0.8
CDX2-202ENST00000548877 CACNG8Q8WXS5 425 aa10.04□□□□□ -0.8
CDX2-202ENST00000548877 TMEM222Q9H0R3 208 aa10.04□□□□□ -0.8
CDX2-202ENST00000548877 SDHAF2Q9NX18 166 aa10.04□□□□□ -0.8
CDX2-202ENST00000548877 DNAH17Q9UFH2 4485 aa10.03□□□□□ -0.8
CDX2-202ENST00000548877 CCSO14618 274 aa10.03□□□□□ -0.8
CDX2-202ENST00000548877 IFNA7P01567 189 aa10.03□□□□□ -0.8
CDX2-202ENST00000548877 S100A11P31949 105 aa10.03□□□□□ -0.8
CDX2-202ENST00000548877 TCTAP57738 103 aa10.03□□□□□ -0.8
CDX2-202ENST00000548877 TNXAQ16473 311 aa10.03□□□□□ -0.8
CDX2-202ENST00000548877 RTL8BQ17RB0 113 aa10.03□□□□□ -0.8
CDX2-202ENST00000548877 IAH1Q2TAA2 248 aaPredicted RBP10.03□□□□□ -0.8
CDX2-202ENST00000548877 VMA21Q3ZAQ7 101 aa10.03□□□□□ -0.8
CDX2-202ENST00000548877 LGALSLQ3ZCW2 172 aaPredicted RBP10.03□□□□□ -0.8
CDX2-202ENST00000548877 OR4A47Q6IF82 309 aa10.03□□□□□ -0.8
CDX2-202ENST00000548877 ZNF818PQ6ZRF7 136 aa10.03□□□□□ -0.8
CDX2-202ENST00000548877 GLYATL2Q8WU03 294 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms