RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 DOPEY1Q5JWR5 2465 aa8.92□□□□□ -0.98
CUX1-212ENST00000547394 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.92□□□□□ -0.983e-7■■■■■ 26.8
CUX1-212ENST00000547394 UBE2CO00762 179 aa8.92□□□□□ -0.98
CUX1-212ENST00000547394 HLA-DRB5Q30154 266 aa8.92□□□□□ -0.98
CUX1-212ENST00000547394 OR8B3Q8NGG8 313 aa8.92□□□□□ -0.98
CUX1-212ENST00000547394 OR1L8Q8NGR8 309 aa8.92□□□□□ -0.98
CUX1-212ENST00000547394 OR8B2Q96RD0 313 aa8.92□□□□□ -0.98
CUX1-212ENST00000547394 RAB1BQ9H0U4 201 aa8.92□□□□□ -0.98
CUX1-212ENST00000547394 PRORYQ9H606 182 aa8.92□□□□□ -0.98
CUX1-212ENST00000547394 GSN-AS1Q9NRJ2 163 aa8.92□□□□□ -0.98
CUX1-212ENST00000547394 IGHV1-3A0A0C4DH29 117 aa8.92□□□□□ -0.98
CUX1-212ENST00000547394 SCO2A0A1W2PP80 73 aa8.92□□□□□ -0.98
CUX1-212ENST00000547394 S100A8P05109 93 aa8.92□□□□□ -0.98
CUX1-212ENST00000547394 LINC00869P0C866 280 aa8.92□□□□□ -0.98
CUX1-212ENST00000547394 SMIM6P0DI80 62 aa8.92□□□□□ -0.98
CUX1-212ENST00000547394 CHRNA7P36544 502 aa8.92□□□□□ -0.98
CUX1-212ENST00000547394 MRGPRG-AS1Q2M3A8 158 aa8.92□□□□□ -0.98
CUX1-212ENST00000547394 SSX8Q7RTT4 187 aa8.92□□□□□ -0.98
CUX1-212ENST00000547394 NPIPB3Q92617 1050 aa8.92□□□□□ -0.98
CUX1-212ENST00000547394 MISP3Q96FF7 219 aa8.92□□□□□ -0.98
CUX1-212ENST00000547394 FAM103A1Q9BTL3 118 aaKnown RBP8.92□□□□□ -0.98
CUX1-212ENST00000547394 CBLN4Q9NTU7 201 aa8.92□□□□□ -0.98
CUX1-212ENST00000547394 S4R3C0 116 aa8.92□□□□□ -0.98
CUX1-212ENST00000547394 A0A0U1RQK1 487 aa8.91□□□□□ -0.98
CUX1-212ENST00000547394 BUB1B-PAK6H3BSN5 160 aa8.91□□□□□ -0.98
CUX1-212ENST00000547394 MOSP00540 346 aa8.91□□□□□ -0.98
CUX1-212ENST00000547394 IGLV1-47P01700 117 aa8.91□□□□□ -0.98
CUX1-212ENST00000547394 AGAP20933 346 aa8.91□□□□□ -0.98
CUX1-212ENST00000547394 FAM209BQ5JX69 171 aa8.91□□□□□ -0.98
CUX1-212ENST00000547394 C16orf82Q7Z2V1 217 aa8.91□□□□□ -0.98
CUX1-212ENST00000547394 RPEQ96AT9 228 aa8.91□□□□□ -0.98
CUX1-212ENST00000547394 YPEL4Q96NS1 127 aa8.91□□□□□ -0.98
CUX1-212ENST00000547394 P2RX4Q99571 388 aa8.91□□□□□ -0.98
CUX1-212ENST00000547394 CLEC7AQ9BXN2 247 aa8.91□□□□□ -0.98
CUX1-212ENST00000547394 RPL23P62829 140 aaKnown RBP8.91□□□□□ -0.98
CUX1-212ENST00000547394 TMEM241Q24JQ0 296 aa8.91□□□□□ -0.98
CUX1-212ENST00000547394 PDPNQ86YL7 162 aa8.91□□□□□ -0.98
CUX1-212ENST00000547394 OR5B3Q8NH48 314 aa8.91□□□□□ -0.98
CUX1-212ENST00000547394 ZMAT5Q9UDW3 170 aaKnown RBP8.91□□□□□ -0.98
CUX1-212ENST00000547394 ZNF257Q9Y2Q1 563 aa8.91□□□□□ -0.98
CUX1-212ENST00000547394 SEC14L6B5MCN3 397 aa8.91□□□□□ -0.98
CUX1-212ENST00000547394 TIMM23O14925 209 aa8.91□□□□□ -0.98
CUX1-212ENST00000547394 MFAP2P55001 183 aa8.91□□□□□ -0.98
CUX1-212ENST00000547394 LCN2P80188 198 aa8.91□□□□□ -0.98
CUX1-212ENST00000547394 NEIL1Q96FI4 390 aaPredicted RBP8.91□□□□□ -0.98
CUX1-212ENST00000547394 METTL1Q9UBP6 276 aaKnown RBP8.91□□□□□ -0.98
CUX1-212ENST00000547394 MIOXQ9UGB7 285 aa8.91□□□□□ -0.98
CUX1-212ENST00000547394 OR7C2O60412 319 aa8.9□□□□□ -0.98
CUX1-212ENST00000547394 USF1P22415 310 aaPredicted RBP8.9□□□□□ -0.98
CUX1-212ENST00000547394 ZFP36P26651 326 aaKnown RBP8.9□□□□□ -0.98
CUX1-212ENST00000547394 ERHP84090 104 aaKnown RBP8.9□□□□□ -0.98
CUX1-212ENST00000547394 PLGLAQ15195 96 aa8.9□□□□□ -0.98
CUX1-212ENST00000547394 PSG5Q15238 335 aa8.9□□□□□ -0.98
CUX1-212ENST00000547394 PDZD11Q5EBL8 140 aa8.9□□□□□ -0.98
CUX1-212ENST00000547394 C11orf71Q6IPW1 123 aa8.9□□□□□ -0.98
CUX1-212ENST00000547394 TMEM167AQ8TBQ9 72 aa8.9□□□□□ -0.98
CUX1-212ENST00000547394 CSPG4Q6UVK1 2322 aa8.9□□□□□ -0.98
CUX1-212ENST00000547394 PTPN13Q12923 2485 aa8.9□□□□□ -0.98
CUX1-212ENST00000547394 TRBV20OR9-2A0A075B6H5 130 aa8.9□□□□□ -0.99
CUX1-212ENST00000547394 TRBV23-1A0A0A0MS06 115 aa8.9□□□□□ -0.99
CUX1-212ENST00000547394 TRGC2P03986 189 aa8.9□□□□□ -0.99
CUX1-212ENST00000547394 STAG3L2P0CL84 134 aa8.9□□□□□ -0.99
CUX1-212ENST00000547394 STAG3L3P0CL85 134 aa8.9□□□□□ -0.99
CUX1-212ENST00000547394 RD3LP0DJH9 198 aa8.9□□□□□ -0.99
CUX1-212ENST00000547394 SSX2Q16385 188 aa8.9□□□□□ -0.99
CUX1-212ENST00000547394 BSXQ3C1V8 233 aa8.9□□□□□ -0.99
CUX1-212ENST00000547394 TMEM30BQ3MIR4 351 aa8.9□□□□□ -0.99
CUX1-212ENST00000547394 VMA21Q3ZAQ7 101 aa8.9□□□□□ -0.99
CUX1-212ENST00000547394 LINC00311Q8N616 119 aa8.9□□□□□ -0.99
CUX1-212ENST00000547394 ITLN2Q8WWU7 325 aaPredicted RBP8.9□□□□□ -0.99
CUX1-212ENST00000547394 TMEM37Q8WXS4 190 aa8.9□□□□□ -0.99
CUX1-212ENST00000547394 GGACTQ9BVM4 153 aa8.9□□□□□ -0.99
CUX1-212ENST00000547394 SLC45A2Q9UMX9 530 aa8.9□□□□□ -0.99
CUX1-212ENST00000547394 H3BTX0 84 aa8.89□□□□□ -0.99
CUX1-212ENST00000547394 MPDU1O75352 247 aa8.89□□□□□ -0.99
CUX1-212ENST00000547394 CLN5O75503 358 aa8.89□□□□□ -0.99
CUX1-212ENST00000547394 GCHFRP30047 84 aa8.89□□□□□ -0.99
CUX1-212ENST00000547394 RND2P52198 227 aa8.89□□□□□ -0.99
CUX1-212ENST00000547394 PRR20EP86478 221 aa8.89□□□□□ -0.99
CUX1-212ENST00000547394 PRR20CP86479 221 aa8.89□□□□□ -0.99
CUX1-212ENST00000547394 PRR20DP86480 221 aa8.89□□□□□ -0.99
CUX1-212ENST00000547394 PRR20BP86481 221 aa8.89□□□□□ -0.99
CUX1-212ENST00000547394 PRR20AP86496 221 aa8.89□□□□□ -0.99
CUX1-212ENST00000547394 CD69Q07108 199 aa8.89□□□□□ -0.99
CUX1-212ENST00000547394 MANBALQ9NQG1 85 aa8.89□□□□□ -0.99
CUX1-212ENST00000547394 NAT8Q9UHE5 227 aa8.89□□□□□ -0.99
CUX1-212ENST00000547394 A0A087X0M5 115 aa8.89□□□□□ -0.99
CUX1-212ENST00000547394 A0A1B0GX30 115 aa8.89□□□□□ -0.99
CUX1-212ENST00000547394 PRRX1P54821 245 aa8.89□□□□□ -0.99
CUX1-212ENST00000547394 RAB31Q13636 194 aa8.89□□□□□ -0.99
CUX1-212ENST00000547394 HES1Q14469 280 aa8.89□□□□□ -0.99
CUX1-212ENST00000547394 C2orf83Q53S99 150 aa8.89□□□□□ -0.99
CUX1-212ENST00000547394 KLF17Q5JT82 389 aaPredicted RBP8.89□□□□□ -0.99
CUX1-212ENST00000547394 TMEM144Q7Z5S9 345 aa8.89□□□□□ -0.99
CUX1-212ENST00000547394 RAB1CQ92928 201 aa8.89□□□□□ -0.99
CUX1-212ENST00000547394 PCGF1Q9BSM1 259 aa8.89□□□□□ -0.99
CUX1-212ENST00000547394 TUBA4BQ9H853 241 aa8.89□□□□□ -0.99
CUX1-212ENST00000547394 FKBP11Q9NYL4 201 aa8.89□□□□□ -0.99
CUX1-212ENST00000547394 PRB1P04280 392 aa8.88□□□□□ -0.99
CUX1-212ENST00000547394 LIPFP07098 398 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms