RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 COMMD5Q9GZQ3 224 aa11.13□□□□□ -0.63
RTN3-210ENST00000540798 GAR1Q9NY12 217 aaKnown RBP11.13□□□□□ -0.63
RTN3-210ENST00000540798 ANKHD1Q8IWZ3 2542 aaKnown RBP11.12□□□□□ -0.63
RTN3-210ENST00000540798 IGKV1OR2-108A0A075B7D4 117 aa11.12□□□□□ -0.63
RTN3-210ENST00000540798 C11orf94C9JXX5 98 aa11.12□□□□□ -0.63
RTN3-210ENST00000540798 PDE6DO43924 150 aa11.12□□□□□ -0.63
RTN3-210ENST00000540798 ARL14EPLP0DKL9 152 aa11.12□□□□□ -0.63
RTN3-210ENST00000540798 KIAA0141Q14154 515 aaPredicted RBP11.12□□□□□ -0.63
RTN3-210ENST00000540798 HLA-DRB5Q30154 266 aa11.12□□□□□ -0.63
RTN3-210ENST00000540798 TXNDC17Q9BRA2 123 aa11.12□□□□□ -0.63
RTN3-210ENST00000540798 CBLN4Q9NTU7 201 aa11.12□□□□□ -0.63
RTN3-210ENST00000540798 GOLT1BQ9Y3E0 138 aa11.12□□□□□ -0.63
RTN3-210ENST00000540798 A0A1W2PN81 502 aa11.12□□□□□ -0.63
RTN3-210ENST00000540798 S100A7P31151 101 aa11.12□□□□□ -0.63
RTN3-210ENST00000540798 CHRNA7P36544 502 aa11.12□□□□□ -0.63
RTN3-210ENST00000540798 RAB4BP61018 213 aa11.12□□□□□ -0.63
RTN3-210ENST00000540798 PKIAP61925 76 aa11.12□□□□□ -0.63
RTN3-210ENST00000540798 RPL23P62829 140 aaKnown RBP11.12□□□□□ -0.63
RTN3-210ENST00000540798 CD69Q07108 199 aa11.12□□□□□ -0.63
RTN3-210ENST00000540798 ZNF430Q9H8G1 570 aaPredicted RBP11.12□□□□□ -0.63
RTN3-210ENST00000540798 RELNP78509 3460 aa11.12□□□□□ -0.63
RTN3-210ENST00000540798 CLDN34H7C241 214 aa11.11□□□□□ -0.63
RTN3-210ENST00000540798 CRYGBP07316 175 aa11.11□□□□□ -0.63
RTN3-210ENST00000540798 LGALS7P47929 136 aa11.11□□□□□ -0.63
RTN3-210ENST00000540798 DMRTA1Q5VZB9 504 aa11.11□□□□□ -0.63
RTN3-210ENST00000540798 PVRIGQ6DKI7 326 aa11.11□□□□□ -0.63
RTN3-210ENST00000540798 PNKDQ8N490 385 aa11.11□□□□□ -0.63
RTN3-210ENST00000540798 CACNG8Q8WXS5 425 aa11.11□□□□□ -0.63
RTN3-210ENST00000540798 RITA1Q96K30 269 aa11.11□□□□□ -0.63
RTN3-210ENST00000540798 HRNRQ86YZ3 2850 aaPredicted RBP11.11□□□□□ -0.63
RTN3-210ENST00000540798 RHOBP62745 196 aa11.11□□□□□ -0.63
RTN3-210ENST00000540798 MOB3BQ86TA1 216 aa11.11□□□□□ -0.63
RTN3-210ENST00000540798 RPUSD4Q96CM3 377 aaKnown RBP11.11□□□□□ -0.63
RTN3-210ENST00000540798 SLC35E1Q96K37 410 aa11.11□□□□□ -0.63
RTN3-210ENST00000540798 SEPSECSQ9HD40 501 aaKnown RBP11.11□□□□□ -0.63
RTN3-210ENST00000540798 VENTXO95231 258 aa11.11□□□□□ -0.63
RTN3-210ENST00000540798 PRRX1P54821 245 aa11.11□□□□□ -0.63
RTN3-210ENST00000540798 ERHP84090 104 aaKnown RBP11.11□□□□□ -0.63
RTN3-210ENST00000540798 WT1-ASQ06250 92 aa11.11□□□□□ -0.63
RTN3-210ENST00000540798 RAB1BQ9H0U4 201 aa11.11□□□□□ -0.63
RTN3-210ENST00000540798 TGIF2-C20orf24A0A0A6YYL0 155 aa11.1□□□□□ -0.63
RTN3-210ENST00000540798 F6UZH7 168 aa11.1□□□□□ -0.63
RTN3-210ENST00000540798 BUB1B-PAK6H3BSN5 160 aa11.1□□□□□ -0.63
RTN3-210ENST00000540798 ATP5G3P48201 142 aa11.1□□□□□ -0.63
RTN3-210ENST00000540798 GNB1P62873 340 aa11.1□□□□□ -0.63
RTN3-210ENST00000540798 VMA21Q3ZAQ7 101 aa11.1□□□□□ -0.63
RTN3-210ENST00000540798 CLEC7AQ9BXN2 247 aa11.1□□□□□ -0.63
RTN3-210ENST00000540798 PPIAL4CA0A0B4J2A2 164 aa11.1□□□□□ -0.63
RTN3-210ENST00000540798 LY6LH3BQJ8 138 aa11.1□□□□□ -0.63
RTN3-210ENST00000540798 PPIAL4GP0DN37 164 aa11.1□□□□□ -0.63
RTN3-210ENST00000540798 HOXA5P20719 270 aa11.1□□□□□ -0.63
RTN3-210ENST00000540798 SPATA31B1PQ5VZV4 182 aa11.1□□□□□ -0.63
RTN3-210ENST00000540798 DCHS2Q6V1P9 2916 aa11.1□□□□□ -0.63
RTN3-210ENST00000540798 TEX45Q8NA69 505 aa11.1□□□□□ -0.63
RTN3-210ENST00000540798 RNASEH2CQ8TDP1 164 aaKnown RBP11.1□□□□□ -0.63
RTN3-210ENST00000540798 ZNF674Q2M3X9 581 aa11.09□□□□□ -0.63
RTN3-210ENST00000540798 OR8B3Q8NGG8 313 aa11.09□□□□□ -0.63
RTN3-210ENST00000540798 OR8B2Q96RD0 313 aa11.09□□□□□ -0.63
RTN3-210ENST00000540798 TMEM208Q9BTX3 173 aa11.09□□□□□ -0.63
RTN3-210ENST00000540798 TPSG1Q9NRR2 321 aa11.09□□□□□ -0.63
RTN3-210ENST00000540798 TRBV24-1A0A075B6N3 115 aa11.09□□□□□ -0.63
RTN3-210ENST00000540798 GCHFRP30047 84 aa11.09□□□□□ -0.63
RTN3-210ENST00000540798 DTX2Q86UW9 622 aa11.09□□□□□ -0.63
RTN3-210ENST00000540798 OR4P4Q8NGL7 312 aa11.09□□□□□ -0.63
RTN3-210ENST00000540798 DOK5Q9P104 306 aa11.09□□□□□ -0.63
RTN3-210ENST00000540798 ARL2-SNX15V9GYD0 113 aa11.09□□□□□ -0.63
RTN3-210ENST00000540798 FABP4P15090 132 aa11.09□□□□□ -0.63
RTN3-210ENST00000540798 ADIRFQ15847 76 aa11.09□□□□□ -0.63
RTN3-210ENST00000540798 MLANAQ16655 118 aa11.09□□□□□ -0.63
RTN3-210ENST00000540798 C10orf55Q5SWW7 151 aa11.09□□□□□ -0.63
RTN3-210ENST00000540798 NEU4Q8WWR8 484 aaPredicted RBP11.09□□□□□ -0.63
RTN3-210ENST00000540798 C19orf24Q9BVV8 132 aa11.09□□□□□ -0.63
RTN3-210ENST00000540798 URGCP-MRPS24S4R325 110 aa11.09□□□□□ -0.63
RTN3-210ENST00000540798 IGHV1-3A0A0C4DH29 117 aa11.08□□□□□ -0.64
RTN3-210ENST00000540798 SLC25A17O43808 307 aa11.08□□□□□ -0.64
RTN3-210ENST00000540798 SOD3P08294 240 aa11.08□□□□□ -0.64
RTN3-210ENST00000540798 RPS10P46783 165 aaKnown RBP11.08□□□□□ -0.64
RTN3-210ENST00000540798 CDX1P47902 265 aaPredicted RBP11.08□□□□□ -0.64
RTN3-210ENST00000540798 SNHG12Q9BXW3 62 aa11.08□□□□□ -0.64
RTN3-210ENST00000540798 FUT9Q9Y231 359 aa11.08□□□□□ -0.64
RTN3-210ENST00000540798 LRBAP50851 2863 aa11.08□□□□□ -0.64
RTN3-210ENST00000540798 ITPR1Q14643 2758 aa11.08□□□□□ -0.64
RTN3-210ENST00000540798 PSMB11A5LHX3 300 aa11.08□□□□□ -0.64
RTN3-210ENST00000540798 DLX1P56177 255 aa11.08□□□□□ -0.64
RTN3-210ENST00000540798 UBE2G2P60604 165 aa11.08□□□□□ -0.64
RTN3-210ENST00000540798 ZNF114Q8NC26 417 aa11.08□□□□□ -0.64
RTN3-210ENST00000540798 OR51G1Q8NGK1 321 aa11.08□□□□□ -0.64
RTN3-210ENST00000540798 PYGO2Q9BRQ0 406 aa11.08□□□□□ -0.64
RTN3-210ENST00000540798 YTHDF2Q9Y5A9 579 aaKnown RBP11.08□□□□□ -0.64
RTN3-210ENST00000540798 A0A1W2PPI3 338 aa11.07□□□□□ -0.64
RTN3-210ENST00000540798 PFN1P07737 140 aaKnown RBP11.07□□□□□ -0.64
RTN3-210ENST00000540798 OR5G3P0C626 314 aa11.07□□□□□ -0.64
RTN3-210ENST00000540798 OR10J1P30954 320 aa11.07□□□□□ -0.64
RTN3-210ENST00000540798 LY6DQ14210 128 aa11.07□□□□□ -0.64
RTN3-210ENST00000540798 C16orf82Q7Z2V1 217 aa11.07□□□□□ -0.64
RTN3-210ENST00000540798 C22orf46C9J442 243 aa11.07□□□□□ -0.64
RTN3-210ENST00000540798 FOXH1O75593 365 aa11.07□□□□□ -0.64
RTN3-210ENST00000540798 PRSS8Q16651 343 aa11.07□□□□□ -0.64
RTN3-210ENST00000540798 FNDC4Q9H6D8 234 aaPredicted RBP11.07□□□□□ -0.64
RTN3-210ENST00000540798 AMMECR1Q9Y4X0 333 aaPredicted RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms