RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 TXNIPQ9H3M7 391 aa7.81□□□□□ -1.16
CLIP1-214ENST00000540539 IGKV1D-43A0A0B4J1Z2 117 aa7.81□□□□□ -1.16
CLIP1-214ENST00000540539 IGKV1D-13A0A0B4J2D9 117 aa7.81□□□□□ -1.16
CLIP1-214ENST00000540539 A0A1B0GWB2 263 aa7.81□□□□□ -1.16
CLIP1-214ENST00000540539 IGKV1-13P0DP09 117 aa7.81□□□□□ -1.16
CLIP1-214ENST00000540539 FCGR2AP12318 317 aa7.81□□□□□ -1.16
CLIP1-214ENST00000540539 NDUFV3P56181 108 aaKnown RBP7.81□□□□□ -1.16
CLIP1-214ENST00000540539 PMS2CLQ68D20 193 aa7.81□□□□□ -1.16
CLIP1-214ENST00000540539 AMTNQ6UX39 209 aa7.81□□□□□ -1.16
CLIP1-214ENST00000540539 ZNF645Q8N7E2 425 aa7.81□□□□□ -1.16
CLIP1-214ENST00000540539 OR9G4Q8NGQ1 327 aa7.81□□□□□ -1.16
CLIP1-214ENST00000540539 WIPF2Q8TF74 440 aaPredicted RBP7.81□□□□□ -1.16
CLIP1-214ENST00000540539 FGF22Q9HCT0 170 aa7.81□□□□□ -1.16
CLIP1-214ENST00000540539 YTHDF2Q9Y5A9 579 aaKnown RBP7.81□□□□□ -1.16
CLIP1-214ENST00000540539 CABIN1Q9Y6J0 2220 aa7.81□□□□□ -1.16
CLIP1-214ENST00000540539 IZUMO1RA6ND01 250 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 E9PLD3 99 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 KIR2DS3K7RE56 304 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 OR2J3O76001 311 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 THBDP07204 575 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 ARL14EPLP0DKL9 152 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 PVRP15151 417 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 G6PCP35575 357 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 FXYD2P54710 66 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 KIR2DS3Q14952 304 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 DEFB134Q4QY38 66 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 DGAT2L6Q6ZPD8 337 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 SLC22A18ASQ8N1D0 253 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 ZADH2Q8N4Q0 377 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 TMEM52Q8NDY8 209 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 C16orf52Q8NHV5 167 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 TMEM147Q9BVK8 224 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 TPPP3Q9BW30 176 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 OSTCQ9NRP0 149 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 RTTNQ86VV8 2226 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 ARHGEF17Q96PE2 2063 aaPredicted RBP7.8□□□□□ -1.16
CLIP1-214ENST00000540539 TNRC6BQ9UPQ9 1833 aaKnown RBP7.8□□□□□ -1.16
CLIP1-214ENST00000540539 LRP4O75096 1905 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 ADAMTS9Q9P2N4 1935 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 PRSS38A1L453 326 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 SMIM9A6NGZ8 99 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 RRHO14718 337 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 TAS2R45P59539 299 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 SRSF1Q07955 248 aaKnown RBP eCLIP7.8□□□□□ -1.16
CLIP1-214ENST00000540539 PSG5Q15238 335 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 ZNF718Q3SXZ3 478 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 CENPWQ5EE01 88 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 TMEM14EPQ6UXP3 125 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 C1orf162Q8NEQ5 155 aaPredicted RBP7.8□□□□□ -1.16
CLIP1-214ENST00000540539 C8orf46Q8TAG6 207 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 C11orf52Q96A22 123 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 OXGR1Q96P68 337 aa7.8□□□□□ -1.16
CLIP1-214ENST00000540539 A0A1W2PR77 199 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 C21orf140B9A014 251 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 NUDT14O95848 222 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 CT45A6P0DMU7 189 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 CT45A5P0DMU8 189 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 CT45A7P0DMV0 189 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 SGCBQ16585 318 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 CT45A1Q5HYN5 189 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 VN1R4Q7Z5H5 301 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 NFE4Q86UQ8 179 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 TMEM178AQ8NBL3 297 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 OR1L3Q8NH93 324 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 CT45A3Q8NHU0 189 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 TSACCQ96A04 125 aaPredicted RBP7.79□□□□□ -1.16
CLIP1-214ENST00000540539 ADTRPQ96IZ2 230 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 AKIRIN1Q9H9L7 192 aaPredicted RBP7.79□□□□□ -1.16
CLIP1-214ENST00000540539 DNAH14Q0VDD8 3507 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 SPTY2D1-AS1A0A0U1RR47 76 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 FNDC10F2Z333 226 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 RHODO00212 210 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 SRD5A1P18405 259 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 MFAP2P55001 183 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 TCTAP57738 103 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 RTL8BQ17RB0 113 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 ANKRD37Q7Z713 158 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 IL1F10Q8WWZ1 152 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 CHCHD1Q96BP2 118 aaKnown RBP7.79□□□□□ -1.16
CLIP1-214ENST00000540539 KIR2DL4Q99706 377 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 CCL28Q9NRJ3 127 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 GPR179Q6PRD1 2367 aa7.79□□□□□ -1.16
CLIP1-214ENST00000540539 IGHG4P01861 327 aa7.78□□□□□ -1.16
CLIP1-214ENST00000540539 CCL1P22362 96 aa7.78□□□□□ -1.16
CLIP1-214ENST00000540539 GCSHP23434 173 aa7.78□□□□□ -1.16
CLIP1-214ENST00000540539 FAM162BQ5T6X4 162 aa7.78□□□□□ -1.16
CLIP1-214ENST00000540539 RASL11AQ6T310 242 aa7.78□□□□□ -1.16
CLIP1-214ENST00000540539 PPP1R35Q8TAP8 253 aa7.78□□□□□ -1.16
CLIP1-214ENST00000540539 DMDP11532 3685 aa7.78□□□□□ -1.16
CLIP1-214ENST00000540539 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.78□□□□□ -1.16
CLIP1-214ENST00000540539 C5orf63A6NC05 138 aa7.78□□□□□ -1.16
CLIP1-214ENST00000540539 FAM90A26D6RGX4 464 aa7.78□□□□□ -1.16
CLIP1-214ENST00000540539 RBP4P02753 201 aa7.78□□□□□ -1.16
CLIP1-214ENST00000540539 OPRK1P41145 380 aa7.78□□□□□ -1.16
CLIP1-214ENST00000540539 ZNF542PQ5EBM4 170 aa7.78□□□□□ -1.16
CLIP1-214ENST00000540539 WIPI1Q5MNZ9 446 aaPredicted RBP7.78□□□□□ -1.16
CLIP1-214ENST00000540539 HLA-DQA1Q5Y7H0 255 aa7.78□□□□□ -1.16
CLIP1-214ENST00000540539 FAM159AQ6UWV7 190 aa7.78□□□□□ -1.16
CLIP1-214ENST00000540539 C6orf15Q6UXA7 325 aaPredicted RBP7.78□□□□□ -1.16
CLIP1-214ENST00000540539 PQLC2Q6ZP29 291 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms