RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 C18orf32Q8TCD1 76 aa9.22□□□□□ -0.93
SYNE1-237ENST00000539504 TIMM8BQ9Y5J9 83 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-237ENST00000539504 ZNF503Q96F45 646 aa9.21□□□□□ -0.93
SYNE1-237ENST00000539504 IGKV1OR2-108A0A075B7D4 117 aa9.21□□□□□ -0.94
SYNE1-237ENST00000539504 SRRM5B3KS81 715 aa9.21□□□□□ -0.94
SYNE1-237ENST00000539504 IGKV3-15P01624 115 aa9.21□□□□□ -0.94
SYNE1-237ENST00000539504 TSPOP30536 169 aa9.21□□□□□ -0.94
SYNE1-237ENST00000539504 GCSAMQ8N6F7 178 aa9.21□□□□□ -0.94
SYNE1-237ENST00000539504 AMMECR1Q9Y4X0 333 aaPredicted RBP9.21□□□□□ -0.94
SYNE1-237ENST00000539504 IGHV2OR16-5A0A0B4J2B6 119 aa9.21□□□□□ -0.94
SYNE1-237ENST00000539504 COX7A2P2O60397 106 aa9.21□□□□□ -0.94
SYNE1-237ENST00000539504 NDUFB8O95169 186 aa9.21□□□□□ -0.94
SYNE1-237ENST00000539504 PLAUP00749 431 aa9.21□□□□□ -0.94
SYNE1-237ENST00000539504 PYYP10082 97 aa9.21□□□□□ -0.94
SYNE1-237ENST00000539504 OR10W1Q8NGF6 305 aa9.21□□□□□ -0.94
SYNE1-237ENST00000539504 ST6GALNAC6Q969X2 333 aa9.21□□□□□ -0.94
SYNE1-237ENST00000539504 WISP2O76076 250 aa9.2□□□□□ -0.94
SYNE1-237ENST00000539504 SELENOVP59797 346 aa9.2□□□□□ -0.94
SYNE1-237ENST00000539504 PMCHL1Q16048 86 aa9.2□□□□□ -0.94
SYNE1-237ENST00000539504 RTL8BQ17RB0 113 aa9.2□□□□□ -0.94
SYNE1-237ENST00000539504 ERASQ7Z444 233 aa9.2□□□□□ -0.94
SYNE1-237ENST00000539504 OR2D3Q8NGH3 330 aa9.2□□□□□ -0.94
SYNE1-237ENST00000539504 OR5B3Q8NH48 314 aa9.2□□□□□ -0.94
SYNE1-237ENST00000539504 OR2T6Q8NHC8 308 aa9.2□□□□□ -0.94
SYNE1-237ENST00000539504 ZNRD1Q9P1U0 126 aa9.2□□□□□ -0.94
SYNE1-237ENST00000539504 TET2Q6N021 2002 aaPredicted RBP9.2□□□□□ -0.94
SYNE1-237ENST00000539504 A0A1W2PRE2 83 aa9.2□□□□□ -0.94
SYNE1-237ENST00000539504 SMIM27A0A1W2PRY6 76 aa9.2□□□□□ -0.94
SYNE1-237ENST00000539504 F2RL2O00254 374 aa9.2□□□□□ -0.94
SYNE1-237ENST00000539504 LEMD1Q68G75 181 aa9.2□□□□□ -0.94
SYNE1-237ENST00000539504 ZNF738Q8NE65 137 aa9.2□□□□□ -0.94
SYNE1-237ENST00000539504 DDB2Q92466 427 aa9.2□□□□□ -0.94
SYNE1-237ENST00000539504 SLC25A33Q9BSK2 321 aa9.2□□□□□ -0.94
SYNE1-237ENST00000539504 COMMD5Q9GZQ3 224 aa9.2□□□□□ -0.94
SYNE1-237ENST00000539504 ARRDC1-AS1Q9H2J1 176 aa9.2□□□□□ -0.94
SYNE1-237ENST00000539504 A0A1W2PNU3 283 aaPredicted RBP9.2□□□□□ -0.94
SYNE1-237ENST00000539504 CCL25O15444 150 aa9.2□□□□□ -0.94
SYNE1-237ENST00000539504 IGLV2-8P01709 118 aa9.2□□□□□ -0.94
SYNE1-237ENST00000539504 IGKV1-16P04430 117 aa9.2□□□□□ -0.94
SYNE1-237ENST00000539504 SPRNQ5BIV9 151 aa9.2□□□□□ -0.94
SYNE1-237ENST00000539504 MORN5Q5VZ52 161 aa9.2□□□□□ -0.94
SYNE1-237ENST00000539504 ADTRPQ96IZ2 230 aa9.2□□□□□ -0.94
SYNE1-237ENST00000539504 SPRY4Q9C004 299 aa9.2□□□□□ -0.94
SYNE1-237ENST00000539504 UBE2G1P62253 170 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 VAMP3Q15836 100 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 RNF151Q2KHN1 245 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 HES3Q5TGS1 186 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 DUX4L9Q6RFH8 374 aaPredicted RBP9.19□□□□□ -0.94
SYNE1-237ENST00000539504 DHRS13Q6UX07 377 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 SPACA3Q8IXA5 215 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 UBALD2Q8IYN6 164 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 ITLN1Q8WWA0 313 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 SAP30LQ9HAJ7 183 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 RAB9BQ9NP90 201 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 ASCL3Q9NQ33 180 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 DMDP11532 3685 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 CCL11P51671 97 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 PRCDQ00LT1 54 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 C9orf106Q8NAJ2 232 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 BLNKQ8WV28 456 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 OR8B2Q96RD0 313 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 PAXXQ9BUH6 204 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 CLEC5AQ9NY25 188 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 ARL2-SNX15V9GYD0 113 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 ROS1P08922 2347 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 IGHV1-18A0A0C4DH31 117 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 KBTBD11-OT1A0A1B0GTJ5 212 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 FAM181BA6NEQ2 426 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 H0Y8G0 127 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 M0R1B8 84 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 UPK2O00526 184 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 KIR2DL2P43627 348 aaPredicted RBP9.19□□□□□ -0.94
SYNE1-237ENST00000539504 RBMXL3Q8N7X1 1067 aaKnown RBP9.19□□□□□ -0.94
SYNE1-237ENST00000539504 NUP35Q8NFH5 326 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 OR4C5Q8NGB2 326 aa9.19□□□□□ -0.94
SYNE1-237ENST00000539504 SNRNP40Q96DI7 357 aaKnown RBP9.19□□□□□ -0.94
SYNE1-237ENST00000539504 TRAV9-2A0A087WT02 112 aa9.18□□□□□ -0.94
SYNE1-237ENST00000539504 TEX50A0A1B0GTY4 177 aa9.18□□□□□ -0.94
SYNE1-237ENST00000539504 A0A1W2PN81 502 aa9.18□□□□□ -0.94
SYNE1-237ENST00000539504 FOXA3P55318 350 aaPredicted RBP9.18□□□□□ -0.94
SYNE1-237ENST00000539504 ERHP84090 104 aaKnown RBP9.18□□□□□ -0.94
SYNE1-237ENST00000539504 TBR1Q16650 682 aa9.18□□□□□ -0.94
SYNE1-237ENST00000539504 NUDT10Q8NFP7 164 aa9.18□□□□□ -0.94
SYNE1-237ENST00000539504 NUDT11Q96G61 164 aa9.18□□□□□ -0.94
SYNE1-237ENST00000539504 SRRM4A7MD48 611 aaKnown RBP9.18□□□□□ -0.94
SYNE1-237ENST00000539504 HIGD1CA8MV81 97 aa9.18□□□□□ -0.94
SYNE1-237ENST00000539504 MMP23AO75900 390 aa9.18□□□□□ -0.94
SYNE1-237ENST00000539504 GNG5P63218 68 aa9.18□□□□□ -0.94
SYNE1-237ENST00000539504 C17orf58Q2M2W7 97 aa9.18□□□□□ -0.94
SYNE1-237ENST00000539504 ORAOV1Q8WV07 137 aa9.18□□□□□ -0.94
SYNE1-237ENST00000539504 IGF2BP2-AS1Q96M15 143 aa9.18□□□□□ -0.94
SYNE1-237ENST00000539504 REG1BP48304 166 aa9.18□□□□□ -0.94
SYNE1-237ENST00000539504 C10orf113Q5VZT2 155 aa9.18□□□□□ -0.94
SYNE1-237ENST00000539504 EBLN2Q6P2I7 272 aa9.18□□□□□ -0.94
SYNE1-237ENST00000539504 RNASE8Q8TDE3 154 aaKnown RBP9.18□□□□□ -0.94
SYNE1-237ENST00000539504 CCL13Q99616 98 aa9.18□□□□□ -0.94
SYNE1-237ENST00000539504 C19orf24Q9BVV8 132 aa9.18□□□□□ -0.94
SYNE1-237ENST00000539504 SH2D7A6NKC9 451 aaPredicted RBP9.17□□□□□ -0.94
SYNE1-237ENST00000539504 M0QZ24 198 aa9.17□□□□□ -0.94
SYNE1-237ENST00000539504 PEX7O00628 323 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms