RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 S100A16Q96FQ6 103 aaKnown RBP9.89□□□□□ -0.83
SS18-204ENST00000539244 SEC22AQ96IW7 307 aa9.89□□□□□ -0.83
SS18-204ENST00000539244 GINS3Q9BRX5 216 aa9.89□□□□□ -0.83
SS18-204ENST00000539244 YTHDF1Q9BYJ9 559 aaKnown RBP9.89□□□□□ -0.83
SS18-204ENST00000539244 MS4A6AQ9H2W1 248 aa9.89□□□□□ -0.83
SS18-204ENST00000539244 IGHV3OR16-13A0A075B7E8 117 aa9.88□□□□□ -0.83
SS18-204ENST00000539244 IGHV3-74A0A0B4J1X5 117 aa9.88□□□□□ -0.83
SS18-204ENST00000539244 LOC100506127A0A0U1RQW1 187 aa9.88□□□□□ -0.83
SS18-204ENST00000539244 GNG7O60262 68 aa9.88□□□□□ -0.83
SS18-204ENST00000539244 PMP2P02689 132 aa9.88□□□□□ -0.83
SS18-204ENST00000539244 EIF4EP06730 217 aaKnown RBP9.88□□□□□ -0.83
SS18-204ENST00000539244 TOMM20LQ6UXN7 152 aa9.88□□□□□ -0.83
SS18-204ENST00000539244 CROCCP3Q8IVE0 287 aa9.88□□□□□ -0.83
SS18-204ENST00000539244 LILRB2Q8N423 598 aa9.88□□□□□ -0.83
SS18-204ENST00000539244 OR5H2Q8NGV7 314 aa9.88□□□□□ -0.83
SS18-204ENST00000539244 OR6F1Q8NGZ6 308 aa9.88□□□□□ -0.83
SS18-204ENST00000539244 ZFAND3Q9H8U3 227 aa9.88□□□□□ -0.83
SS18-204ENST00000539244 DNAH2Q9P225 4427 aa9.88□□□□□ -0.83
SS18-204ENST00000539244 PKHD1P08F94 4074 aa9.87□□□□□ -0.83
SS18-204ENST00000539244 KIAA1109Q2LD37 5005 aa9.87□□□□□ -0.83
SS18-204ENST00000539244 DEFB4AO15263 64 aa9.87□□□□□ -0.83
SS18-204ENST00000539244 ST8SIA3O43173 380 aa9.87□□□□□ -0.83
SS18-204ENST00000539244 IGKV1-39P01597 117 aa9.87□□□□□ -0.83
SS18-204ENST00000539244 IGKV1D-39P04432 117 aa9.87□□□□□ -0.83
SS18-204ENST00000539244 GIG44P09565 113 aaPredicted RBP9.87□□□□□ -0.83
SS18-204ENST00000539244 DEFB131AP59861 70 aa9.87□□□□□ -0.83
SS18-204ENST00000539244 HSPE1P61604 102 aaKnown RBP9.87□□□□□ -0.83
SS18-204ENST00000539244 TMEM41BQ5BJD5 291 aa9.87□□□□□ -0.83
SS18-204ENST00000539244 UBE2NLQ5JXB2 153 aa9.87□□□□□ -0.83
SS18-204ENST00000539244 DUSP18Q8NEJ0 188 aa9.87□□□□□ -0.83
SS18-204ENST00000539244 OR4A16Q8NH70 328 aa9.87□□□□□ -0.83
SS18-204ENST00000539244 AGRNO00468 2067 aa9.87□□□□□ -0.83
SS18-204ENST00000539244 IGLL5B9A064 214 aa9.86□□□□□ -0.83
SS18-204ENST00000539244 INS-IGF2F8WCM5 200 aa9.86□□□□□ -0.83
SS18-204ENST00000539244 DNASE2O00115 360 aaPredicted RBP9.86□□□□□ -0.83
SS18-204ENST00000539244 IGHV3-48P01763 117 aa9.86□□□□□ -0.83
SS18-204ENST00000539244 APOHP02749 345 aaPredicted RBP9.86□□□□□ -0.83
SS18-204ENST00000539244 HRH1P35367 487 aa9.86□□□□□ -0.83
SS18-204ENST00000539244 NPBWR1P48145 328 aa9.86□□□□□ -0.83
SS18-204ENST00000539244 TAS2R20P59543 309 aa9.86□□□□□ -0.83
SS18-204ENST00000539244 ERHP84090 104 aaKnown RBP9.86□□□□□ -0.83
SS18-204ENST00000539244 TMEM69Q5SWH9 247 aa9.86□□□□□ -0.83
SS18-204ENST00000539244 LEMD1Q68G75 181 aa9.86□□□□□ -0.83
SS18-204ENST00000539244 PVRIGQ6DKI7 326 aa9.86□□□□□ -0.83
SS18-204ENST00000539244 LPCAT3Q6P1A2 487 aa9.86□□□□□ -0.83
SS18-204ENST00000539244 ZNF600Q6ZNG1 722 aa9.86□□□□□ -0.83
SS18-204ENST00000539244 H2BFWTQ7Z2G1 175 aa9.86□□□□□ -0.83
SS18-204ENST00000539244 TRPT1Q86TN4 253 aaKnown RBP9.86□□□□□ -0.83
SS18-204ENST00000539244 LYSMD2Q8IV50 215 aa9.86□□□□□ -0.83
SS18-204ENST00000539244 STHQ8IWL8 128 aa9.86□□□□□ -0.83
SS18-204ENST00000539244 FAM24BQ8N5W8 94 aa9.86□□□□□ -0.83
SS18-204ENST00000539244 PCLOQ9Y6V0 5065 aa9.86□□□□□ -0.83
SS18-204ENST00000539244 ZNF705EA8MWA4 302 aaPredicted RBP9.85□□□□□ -0.83
SS18-204ENST00000539244 RBMY1A1P0DJD3 496 aaKnown RBP9.85□□□□□ -0.83
SS18-204ENST00000539244 RBMY1CP0DJD4 496 aa9.85□□□□□ -0.83
SS18-204ENST00000539244 MIFP14174 115 aa9.85□□□□□ -0.83
SS18-204ENST00000539244 S100GP29377 79 aa9.85□□□□□ -0.83
SS18-204ENST00000539244 UCP3P55916 312 aa9.85□□□□□ -0.83
SS18-204ENST00000539244 RBMY1FQ15415 496 aaKnown RBP9.85□□□□□ -0.83
SS18-204ENST00000539244 PHLDA2Q53GA4 152 aa9.85□□□□□ -0.83
SS18-204ENST00000539244 LINC00336Q6ZUF6 198 aa9.85□□□□□ -0.83
SS18-204ENST00000539244 TBC1D26Q86UD7 250 aa9.85□□□□□ -0.83
SS18-204ENST00000539244 PINX1Q96BK5 328 aaKnown RBP9.85□□□□□ -0.83
SS18-204ENST00000539244 GRAMD2BQ96HH9 432 aa9.85□□□□□ -0.83
SS18-204ENST00000539244 TMEM231Q9H6L2 316 aa9.85□□□□□ -0.83
SS18-204ENST00000539244 PUS1Q9Y606 427 aaKnown RBP eCLIP9.85□□□□□ -0.83
SS18-204ENST00000539244 IGHV4-28A0A0C4DH34 117 aa9.84□□□□□ -0.83
SS18-204ENST00000539244 A0A1B0GU03 582 aa9.84□□□□□ -0.83
SS18-204ENST00000539244 TMEM50AO95807 157 aa9.84□□□□□ -0.83
SS18-204ENST00000539244 SPP1P10451 314 aa9.84□□□□□ -0.83
SS18-204ENST00000539244 PRSS3P35030 304 aa9.84□□□□□ -0.83
SS18-204ENST00000539244 MORN3Q6PF18 240 aaPredicted RBP9.84□□□□□ -0.83
SS18-204ENST00000539244 GPX8Q8TED1 209 aa9.84□□□□□ -0.83
SS18-204ENST00000539244 MRGPRFQ96AM1 343 aa9.84□□□□□ -0.83
SS18-204ENST00000539244 Q9H521 79 aa9.84□□□□□ -0.83
SS18-204ENST00000539244 DNAH17Q9UFH2 4485 aa9.83□□□□□ -0.84
SS18-204ENST00000539244 TRAV10A0A0B4J240 114 aa9.83□□□□□ -0.84
SS18-204ENST00000539244 IGHV3-66A0A0C4DH42 116 aa9.83□□□□□ -0.84
SS18-204ENST00000539244 A0A1W2PS18 150 aa9.83□□□□□ -0.84
SS18-204ENST00000539244 K7EQG2 157 aa9.83□□□□□ -0.84
SS18-204ENST00000539244 CRYBB3P26998 211 aa9.83□□□□□ -0.84
SS18-204ENST00000539244 HLA-DMAP28067 261 aa9.83□□□□□ -0.84
SS18-204ENST00000539244 HLA-DMBP28068 263 aa9.83□□□□□ -0.84
SS18-204ENST00000539244 TSPAN5P62079 268 aa9.83□□□□□ -0.84
SS18-204ENST00000539244 SAMD12Q8N8I0 201 aa9.83□□□□□ -0.84
SS18-204ENST00000539244 X6R8D5 127 aa9.83□□□□□ -0.84
SS18-204ENST00000539244 IGHV4-4A0A075B6R2 117 aa9.82□□□□□ -0.84
SS18-204ENST00000539244 ELOA3CA0A087WX78 387 aaPredicted RBP9.82□□□□□ -0.84
SS18-204ENST00000539244 A0A1B0GVY2 172 aa9.82□□□□□ -0.84
SS18-204ENST00000539244 CORTO00230 105 aa9.82□□□□□ -0.84
SS18-204ENST00000539244 P0C879 139 aa9.82□□□□□ -0.84
SS18-204ENST00000539244 C4BPBP20851 252 aa9.82□□□□□ -0.84
SS18-204ENST00000539244 NPPCP23582 126 aa9.82□□□□□ -0.84
SS18-204ENST00000539244 TGFBR1P36897 503 aa9.82□□□□□ -0.84
SS18-204ENST00000539244 RPL11P62913 178 aaKnown RBP9.82□□□□□ -0.84
SS18-204ENST00000539244 NEDD8Q15843 81 aa9.82□□□□□ -0.84
SS18-204ENST00000539244 Q6ZTC4 211 aa9.82□□□□□ -0.84
SS18-204ENST00000539244 DCANP1Q8TF63 244 aa9.82□□□□□ -0.84
SS18-204ENST00000539244 RNF126Q9BV68 326 aa9.82□□□□□ -0.84
SS18-204ENST00000539244 SCPEP1Q9HB40 452 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms