RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 M0QYG6 137 aa10.31□□□□□ -0.76
SYNE1-235ENST00000537033 CHEK1O14757 476 aa10.31□□□□□ -0.76
SYNE1-235ENST00000537033 IGKV1-39P01597 117 aa10.31□□□□□ -0.76
SYNE1-235ENST00000537033 IGKV1D-39P04432 117 aa10.31□□□□□ -0.76
SYNE1-235ENST00000537033 CD5P06127 495 aa10.31□□□□□ -0.76
SYNE1-235ENST00000537033 ATF4P18848 351 aaPredicted RBP10.31□□□□□ -0.76
SYNE1-235ENST00000537033 SNCAP37840 140 aa10.31□□□□□ -0.76
SYNE1-235ENST00000537033 TFPI2P48307 235 aa10.31□□□□□ -0.76
SYNE1-235ENST00000537033 PAFAH1B2P68402 229 aa10.31□□□□□ -0.76
SYNE1-235ENST00000537033 RNASE12Q5GAN4 147 aaKnown RBP10.31□□□□□ -0.76
SYNE1-235ENST00000537033 RNASE10Q5GAN6 216 aaKnown RBP10.31□□□□□ -0.76
SYNE1-235ENST00000537033 LINC00476Q8WZB0 136 aa10.31□□□□□ -0.76
SYNE1-235ENST00000537033 MAP6D1Q9H9H5 199 aa10.31□□□□□ -0.76
SYNE1-235ENST00000537033 KLK5Q9Y337 293 aaPredicted RBP10.31□□□□□ -0.76
SYNE1-235ENST00000537033 DNAH1Q9P2D7 4330 aa10.3□□□□□ -0.76
SYNE1-235ENST00000537033 IGKV3-7A0A075B6H7 116 aa10.3□□□□□ -0.76
SYNE1-235ENST00000537033 LY6G6CO95867 125 aa10.3□□□□□ -0.76
SYNE1-235ENST00000537033 IGHV3-48P01763 117 aa10.3□□□□□ -0.76
SYNE1-235ENST00000537033 TBPP20226 339 aa10.3□□□□□ -0.76
SYNE1-235ENST00000537033 NPBWR1P48145 328 aa10.3□□□□□ -0.76
SYNE1-235ENST00000537033 PIGPP57054 158 aa10.3□□□□□ -0.76
SYNE1-235ENST00000537033 RND3P61587 244 aa10.3□□□□□ -0.76
SYNE1-235ENST00000537033 APRG1Q8IVJ8 170 aa10.3□□□□□ -0.76
SYNE1-235ENST00000537033 ARRDC1Q8N5I2 433 aa10.3□□□□□ -0.76
SYNE1-235ENST00000537033 DUSP18Q8NEJ0 188 aa10.3□□□□□ -0.76
SYNE1-235ENST00000537033 CORTO00230 105 aa10.29□□□□□ -0.76
SYNE1-235ENST00000537033 SCGB2A1O75556 95 aa10.29□□□□□ -0.76
SYNE1-235ENST00000537033 IFNA17P01571 189 aa10.29□□□□□ -0.76
SYNE1-235ENST00000537033 HOXA1P49639 335 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-235ENST00000537033 SUB1P53999 127 aaKnown RBP eCLIP10.29□□□□□ -0.76
SYNE1-235ENST00000537033 SPINK9Q5DT21 86 aa10.29□□□□□ -0.76
SYNE1-235ENST00000537033 CEMP1Q6PRD7 247 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-235ENST00000537033 TCF24Q7RTU0 167 aa10.29□□□□□ -0.76
SYNE1-235ENST00000537033 CCDC71LQ8N9Z2 235 aa10.29□□□□□ -0.76
SYNE1-235ENST00000537033 RNASE11Q8TAA1 199 aaKnown RBP10.29□□□□□ -0.76
SYNE1-235ENST00000537033 C15orf40Q8WUR7 153 aa10.29□□□□□ -0.76
SYNE1-235ENST00000537033 TMEM231Q9H6L2 316 aa10.29□□□□□ -0.76
SYNE1-235ENST00000537033 ENY2Q9NPA8 101 aa10.29□□□□□ -0.76
SYNE1-235ENST00000537033 IGHV3OR16-13A0A075B7E8 117 aa10.28□□□□□ -0.76
SYNE1-235ENST00000537033 IGHV3-74A0A0B4J1X5 117 aa10.28□□□□□ -0.76
SYNE1-235ENST00000537033 MPTX1A8MV57 137 aa10.28□□□□□ -0.76
SYNE1-235ENST00000537033 DNASE2O00115 360 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-235ENST00000537033 ST8SIA3O43173 380 aa10.28□□□□□ -0.76
SYNE1-235ENST00000537033 PI3P19957 117 aa10.28□□□□□ -0.76
SYNE1-235ENST00000537033 PPP5CP53041 499 aa10.28□□□□□ -0.76
SYNE1-235ENST00000537033 TRIM16LQ309B1 348 aa10.28□□□□□ -0.76
SYNE1-235ENST00000537033 ZNF600Q6ZNG1 722 aa10.28□□□□□ -0.76
SYNE1-235ENST00000537033 GBGT1Q8N5D6 347 aa10.28□□□□□ -0.76
SYNE1-235ENST00000537033 ZFAND1Q8TCF1 268 aa10.28□□□□□ -0.76
SYNE1-235ENST00000537033 GATAD1Q8WUU5 269 aa10.28□□□□□ -0.76
SYNE1-235ENST00000537033 RRNAD1Q96FB5 475 aaKnown RBP10.28□□□□□ -0.76
SYNE1-235ENST00000537033 CSTL1Q9H114 145 aa10.28□□□□□ -0.76
SYNE1-235ENST00000537033 COPZ2Q9P299 210 aa10.28□□□□□ -0.76
SYNE1-235ENST00000537033 EXTL2Q9UBQ6 330 aa10.28□□□□□ -0.76
SYNE1-235ENST00000537033 C3orf85A0A1B0GTC6 90 aa10.27□□□□□ -0.77
SYNE1-235ENST00000537033 CD3DP04234 171 aa10.27□□□□□ -0.77
SYNE1-235ENST00000537033 RPL11P62913 178 aaKnown RBP10.27□□□□□ -0.77
SYNE1-235ENST00000537033 EWSR1Q01844 656 aaKnown RBP eCLIP10.27□□□□□ -0.77
SYNE1-235ENST00000537033 IZUMO4Q1ZYL8 232 aa10.27□□□□□ -0.77
SYNE1-235ENST00000537033 TOMM20LQ6UXN7 152 aa10.27□□□□□ -0.77
SYNE1-235ENST00000537033 LHFPL1Q86WI0 220 aa10.27□□□□□ -0.77
SYNE1-235ENST00000537033 OR52I2Q8NH67 350 aa10.27□□□□□ -0.77
SYNE1-235ENST00000537033 ST8SIA2Q92186 375 aa10.27□□□□□ -0.77
SYNE1-235ENST00000537033 TP53RKQ96S44 253 aa10.27□□□□□ -0.77
SYNE1-235ENST00000537033 KLK11Q9UBX7 282 aa10.27□□□□□ -0.77
SYNE1-235ENST00000537033 PUS1Q9Y606 427 aaKnown RBP eCLIP10.27□□□□□ -0.77
SYNE1-235ENST00000537033 INS-IGF2F8WCM5 200 aa10.26□□□□□ -0.77
SYNE1-235ENST00000537033 B3GALNT1O75752 331 aa10.26□□□□□ -0.77
SYNE1-235ENST00000537033 IGKV1-5P01602 117 aa10.26□□□□□ -0.77
SYNE1-235ENST00000537033 ZNF182P17025 639 aaPredicted RBP10.26□□□□□ -0.77
SYNE1-235ENST00000537033 OPRK1P41145 380 aa10.26□□□□□ -0.77
SYNE1-235ENST00000537033 ZNF124Q15973 351 aa10.26□□□□□ -0.77
SYNE1-235ENST00000537033 SCGB2B2Q4G0G5 96 aa10.26□□□□□ -0.77
SYNE1-235ENST00000537033 FAM90A2PQ658T7 463 aa10.26□□□□□ -0.77
SYNE1-235ENST00000537033 ZNF414Q96IQ9 312 aa10.26□□□□□ -0.77
SYNE1-235ENST00000537033 RARRES2Q99969 163 aa10.26□□□□□ -0.77
SYNE1-235ENST00000537033 VSIRQ9H7M9 311 aa10.26□□□□□ -0.77
SYNE1-235ENST00000537033 MTFP1Q9UDX5 166 aa10.26□□□□□ -0.77
SYNE1-235ENST00000537033 A0A0B4J293 547 aa10.25□□□□□ -0.77
SYNE1-235ENST00000537033 A0A1W2PS18 150 aa10.25□□□□□ -0.77
SYNE1-235ENST00000537033 DFFBO76075 338 aa10.25□□□□□ -0.77
SYNE1-235ENST00000537033 GABARAPO95166 117 aa10.25□□□□□ -0.77
SYNE1-235ENST00000537033 P0C879 139 aa10.25□□□□□ -0.77
SYNE1-235ENST00000537033 TAS2R19P59542 299 aa10.25□□□□□ -0.77
SYNE1-235ENST00000537033 OR13C8Q8NGS7 320 aa10.25□□□□□ -0.77
SYNE1-235ENST00000537033 TERB2Q8NHR7 220 aa10.25□□□□□ -0.77
SYNE1-235ENST00000537033 NARS2Q96I59 477 aaKnown RBP10.25□□□□□ -0.77
SYNE1-235ENST00000537033 MFFQ9GZY8 342 aa10.25□□□□□ -0.77
SYNE1-235ENST00000537033 MS4A6AQ9H2W1 248 aa10.25□□□□□ -0.77
SYNE1-235ENST00000537033 ZFAND3Q9H8U3 227 aa10.25□□□□□ -0.77
SYNE1-235ENST00000537033 TRAV2A0A0B4J234 112 aa10.24□□□□□ -0.77
SYNE1-235ENST00000537033 IGHV3-66A0A0C4DH42 116 aa10.24□□□□□ -0.77
SYNE1-235ENST00000537033 RAB3DO95716 219 aa10.24□□□□□ -0.77
SYNE1-235ENST00000537033 TMEM50AO95807 157 aa10.24□□□□□ -0.77
SYNE1-235ENST00000537033 CA1P00915 261 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-235ENST00000537033 RNASE2P10153 161 aaKnown RBP10.24□□□□□ -0.77
SYNE1-235ENST00000537033 NPPCP23582 126 aa10.24□□□□□ -0.77
SYNE1-235ENST00000537033 ETV6P41212 452 aa10.24□□□□□ -0.77
SYNE1-235ENST00000537033 SP6Q3SY56 376 aa10.24□□□□□ -0.77
SYNE1-235ENST00000537033 TMEM229BQ8NBD8 167 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms