RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 PPP1R1AQ13522 171 aa9.85□□□□□ -0.83
VPS28-216ENST00000533806 HAPLN4Q86UW8 402 aa9.85□□□□□ -0.83
VPS28-216ENST00000533806 LGI3Q8N145 548 aa9.85□□□□□ -0.83
VPS28-216ENST00000533806 CENPSQ8N2Z9 138 aa9.85□□□□□ -0.83
VPS28-216ENST00000533806 ZNF436Q9C0F3 470 aaPredicted RBP9.85□□□□□ -0.83
VPS28-216ENST00000533806 C21orf62Q9NYP8 219 aa9.85□□□□□ -0.83
VPS28-216ENST00000533806 IGHV3-21A0A0B4J1V1 117 aa9.84□□□□□ -0.83
VPS28-216ENST00000533806 C2orf70A6NJV1 201 aa9.84□□□□□ -0.83
VPS28-216ENST00000533806 TGOLN2O43493 480 aa9.84□□□□□ -0.83
VPS28-216ENST00000533806 PITX3O75364 302 aa9.84□□□□□ -0.83
VPS28-216ENST00000533806 ANXA3P12429 323 aa9.84□□□□□ -0.83
VPS28-216ENST00000533806 UBE2MP61081 183 aaKnown RBP9.84□□□□□ -0.83
VPS28-216ENST00000533806 SPSB3Q6PJ21 355 aa9.84□□□□□ -0.83
VPS28-216ENST00000533806 UNQ9165/PRO28630Q6UXU0 137 aa9.84□□□□□ -0.83
VPS28-216ENST00000533806 RNASE11Q8TAA1 199 aaKnown RBP9.84□□□□□ -0.83
VPS28-216ENST00000533806 BSCL2Q96G97 398 aaPredicted RBP9.84□□□□□ -0.83
VPS28-216ENST00000533806 CHRDL1Q9BU40 450 aa9.84□□□□□ -0.83
VPS28-216ENST00000533806 BATF3Q9NR55 127 aa9.84□□□□□ -0.83
VPS28-216ENST00000533806 PTTG2Q9NZH5 202 aa9.84□□□□□ -0.83
VPS28-216ENST00000533806 PEMTQ9UBM1 199 aa9.84□□□□□ -0.83
VPS28-216ENST00000533806 HSPB7Q9UBY9 170 aa9.84□□□□□ -0.83
VPS28-216ENST00000533806 FLVCR2Q9UPI3 526 aa9.84□□□□□ -0.83
VPS28-216ENST00000533806 A0A1B0GU03 582 aa9.83□□□□□ -0.84
VPS28-216ENST00000533806 LINC00854A0A1B0GVQ3 168 aa9.83□□□□□ -0.84
VPS28-216ENST00000533806 DUXBA0A1W2PPF3 345 aa9.83□□□□□ -0.84
VPS28-216ENST00000533806 TMEM213A2RRL7 107 aa9.83□□□□□ -0.84
VPS28-216ENST00000533806 OR2T8A6NH00 312 aa9.83□□□□□ -0.84
VPS28-216ENST00000533806 MT-CO2P00403 227 aa9.83□□□□□ -0.84
VPS28-216ENST00000533806 C8orf88P0DMB2 117 aa9.83□□□□□ -0.84
VPS28-216ENST00000533806 SULT1A3P0DMM9 295 aa9.83□□□□□ -0.84
VPS28-216ENST00000533806 SULT1A4P0DMN0 295 aa9.83□□□□□ -0.84
VPS28-216ENST00000533806 GP9P14770 177 aa9.83□□□□□ -0.84
VPS28-216ENST00000533806 EDN2P20800 178 aa9.83□□□□□ -0.84
VPS28-216ENST00000533806 SNCAP37840 140 aa9.83□□□□□ -0.84
VPS28-216ENST00000533806 INPP1P49441 399 aa9.83□□□□□ -0.84
VPS28-216ENST00000533806 FAM106AQ4KMX7 169 aa9.83□□□□□ -0.84
VPS28-216ENST00000533806 PLET1Q6UQ28 207 aa9.83□□□□□ -0.84
VPS28-216ENST00000533806 TMEM170AQ8WVE7 144 aa9.83□□□□□ -0.84
VPS28-216ENST00000533806 MISP3Q96FF7 219 aa9.83□□□□□ -0.84
VPS28-216ENST00000533806 TXN2Q99757 166 aa9.83□□□□□ -0.84
VPS28-216ENST00000533806 PDCD10Q9BUL8 212 aa9.83□□□□□ -0.84
VPS28-216ENST00000533806 CCDC32Q9BV29 185 aa9.83□□□□□ -0.84
VPS28-216ENST00000533806 ZC4H2Q9NQZ6 224 aa9.83□□□□□ -0.84
VPS28-216ENST00000533806 CACFD1Q9UGQ2 172 aa9.83□□□□□ -0.84
VPS28-216ENST00000533806 PIGBOS1A0A0B4J2F0 54 aa9.82□□□□□ -0.84
VPS28-216ENST00000533806 C9orf170A2RU37 121 aa9.82□□□□□ -0.84
VPS28-216ENST00000533806 CENPXA8MT69 81 aa9.82□□□□□ -0.84
VPS28-216ENST00000533806 SLC25A6P12236 298 aa9.82□□□□□ -0.84
VPS28-216ENST00000533806 FOLR2P14207 255 aa9.82□□□□□ -0.84
VPS28-216ENST00000533806 CBLN1P23435 193 aa9.82□□□□□ -0.84
VPS28-216ENST00000533806 VAMP1P23763 118 aa9.82□□□□□ -0.84
VPS28-216ENST00000533806 HOXA1P49639 335 aaPredicted RBP9.82□□□□□ -0.84
VPS28-216ENST00000533806 TNFRSF9Q07011 255 aa9.82□□□□□ -0.84
VPS28-216ENST00000533806 SMCO1Q147U7 214 aa9.82□□□□□ -0.84
VPS28-216ENST00000533806 DEFB114Q30KQ6 69 aa9.82□□□□□ -0.84
VPS28-216ENST00000533806 DEFB121Q5J5C9 76 aa9.82□□□□□ -0.84
VPS28-216ENST00000533806 Q8N1Y9 231 aa9.82□□□□□ -0.84
VPS28-216ENST00000533806 OR2K2Q8NGT1 345 aa9.82□□□□□ -0.84
VPS28-216ENST00000533806 S100ZQ8WXG8 99 aa9.82□□□□□ -0.84
VPS28-216ENST00000533806 FNDC4Q9H6D8 234 aaPredicted RBP9.82□□□□□ -0.84
VPS28-216ENST00000533806 SORL1Q92673 2214 aa9.82□□□□□ -0.84
VPS28-216ENST00000533806 IZUMO1RA6ND01 250 aa9.81□□□□□ -0.84
VPS28-216ENST00000533806 LYRM1O43325 122 aa9.81□□□□□ -0.84
VPS28-216ENST00000533806 IGHV3-48P01763 117 aa9.81□□□□□ -0.84
VPS28-216ENST00000533806 HTR2BP41595 481 aa9.81□□□□□ -0.84
VPS28-216ENST00000533806 SUB1P53999 127 aaKnown RBP eCLIP9.81□□□□□ -0.84
VPS28-216ENST00000533806 MFAP4P55083 255 aa9.81□□□□□ -0.84
VPS28-216ENST00000533806 ELLP55199 621 aaPredicted RBP9.81□□□□□ -0.84
VPS28-216ENST00000533806 C2orf83Q53S99 150 aa9.81□□□□□ -0.84
VPS28-216ENST00000533806 C11orf87Q6NUJ2 197 aa9.81□□□□□ -0.84
VPS28-216ENST00000533806 TMEM190Q8WZ59 177 aa9.81□□□□□ -0.84
VPS28-216ENST00000533806 GAR1Q9NY12 217 aaKnown RBP9.81□□□□□ -0.84
VPS28-216ENST00000533806 TMED3Q9Y3Q3 217 aa9.81□□□□□ -0.84
VPS28-216ENST00000533806 IGHV3-35A0A0C4DH35 117 aa9.8□□□□□ -0.84
VPS28-216ENST00000533806 ZNF320A2RRD8 509 aa9.8□□□□□ -0.84
VPS28-216ENST00000533806 ZNF785A8K8V0 405 aa9.8□□□□□ -0.84
VPS28-216ENST00000533806 CORTO00230 105 aa9.8□□□□□ -0.84
VPS28-216ENST00000533806 NDUFA4O00483 81 aa9.8□□□□□ -0.84
VPS28-216ENST00000533806 OR4E1P0C645 316 aa9.8□□□□□ -0.84
VPS28-216ENST00000533806 DHRS2Q13268 280 aa9.8□□□□□ -0.84
VPS28-216ENST00000533806 DCTN2Q13561 401 aaKnown RBP9.8□□□□□ -0.84
VPS28-216ENST00000533806 MLANAQ16655 118 aa9.8□□□□□ -0.84
VPS28-216ENST00000533806 CD300EQ496F6 205 aaPredicted RBP9.8□□□□□ -0.84
VPS28-216ENST00000533806 TM4SF20Q53R12 229 aa9.8□□□□□ -0.84
VPS28-216ENST00000533806 CACNG8Q8WXS5 425 aa9.8□□□□□ -0.84
VPS28-216ENST00000533806 B9D2Q9BPU9 175 aa9.8□□□□□ -0.84
VPS28-216ENST00000533806 ENY2Q9NPA8 101 aa9.8□□□□□ -0.84
VPS28-216ENST00000533806 HEYLQ9NQ87 328 aaPredicted RBP9.8□□□□□ -0.84
VPS28-216ENST00000533806 TECRQ9NZ01 308 aaKnown RBP9.8□□□□□ -0.84
VPS28-216ENST00000533806 MRPL36Q9P0J6 103 aaKnown RBP9.8□□□□□ -0.84
VPS28-216ENST00000533806 TBC1D24Q9ULP9 559 aa9.8□□□□□ -0.84
VPS28-216ENST00000533806 LY86O95711 162 aa9.79□□□□□ -0.84
VPS28-216ENST00000533806 ANXA7P20073 488 aaKnown RBP9.79□□□□□ -0.84
VPS28-216ENST00000533806 Q56UQ5 140 aa9.79□□□□□ -0.84
VPS28-216ENST00000533806 LCN12Q6JVE5 192 aa9.79□□□□□ -0.84
VPS28-216ENST00000533806 LYG2Q86SG7 212 aa9.79□□□□□ -0.84
VPS28-216ENST00000533806 UBAC2Q8NBM4 344 aa9.79□□□□□ -0.84
VPS28-216ENST00000533806 UXS1Q8NBZ7 420 aa9.79□□□□□ -0.84
VPS28-216ENST00000533806 MARC2Q969Z3 335 aa9.79□□□□□ -0.84
VPS28-216ENST00000533806 PINX1Q96BK5 328 aaKnown RBP9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms