RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 MALSU1Q96EH3 234 aa11.86□□□□□ -0.51
ECHDC1-220ENST00000528402 RITA1Q96K30 269 aa11.86□□□□□ -0.51
ECHDC1-220ENST00000528402 SMIM7Q9BQ49 75 aa11.86□□□□□ -0.51
ECHDC1-220ENST00000528402 TMEM167BQ9NRX6 74 aa11.86□□□□□ -0.51
ECHDC1-220ENST00000528402 TBL2Q9Y4P3 447 aaKnown RBP11.86□□□□□ -0.51
ECHDC1-220ENST00000528402 KLF2Q9Y5W3 355 aaPredicted RBP11.86□□□□□ -0.51
ECHDC1-220ENST00000528402 SPTBN1Q01082 2364 aaKnown RBP11.85□□□□□ -0.51
ECHDC1-220ENST00000528402 FOXH1O75593 365 aa11.85□□□□□ -0.51
ECHDC1-220ENST00000528402 CRYGCP07315 174 aa11.85□□□□□ -0.51
ECHDC1-220ENST00000528402 OR5G3P0C626 314 aa11.85□□□□□ -0.51
ECHDC1-220ENST00000528402 ARL14EPLP0DKL9 152 aa11.85□□□□□ -0.51
ECHDC1-220ENST00000528402 GCHFRP30047 84 aa11.85□□□□□ -0.51
ECHDC1-220ENST00000528402 LGALS4P56470 323 aa11.85□□□□□ -0.51
ECHDC1-220ENST00000528402 HCP5Q6MZN7 132 aa11.85□□□□□ -0.51
ECHDC1-220ENST00000528402 OR2T10Q8NGZ9 312 aa11.85□□□□□ -0.51
ECHDC1-220ENST00000528402 HIST1H2BAQ96A08 127 aa11.85□□□□□ -0.51
ECHDC1-220ENST00000528402 PFDN5Q99471 154 aa11.85□□□□□ -0.51
ECHDC1-220ENST00000528402 IGHV2-70DA0A0C4DH43 119 aa11.84□□□□□ -0.51
ECHDC1-220ENST00000528402 TCRBV4S1A1TA0A5B7 111 aa11.84□□□□□ -0.51
ECHDC1-220ENST00000528402 C1orf196B1AJZ1 125 aa11.84□□□□□ -0.51
ECHDC1-220ENST00000528402 CLDN34H7C241 214 aa11.84□□□□□ -0.51
ECHDC1-220ENST00000528402 TIMM23O14925 209 aa11.84□□□□□ -0.51
ECHDC1-220ENST00000528402 NBR2O15453 112 aa11.84□□□□□ -0.51
ECHDC1-220ENST00000528402 NDUFA3O95167 84 aa11.84□□□□□ -0.51
ECHDC1-220ENST00000528402 CRYBA1P05813 215 aa11.84□□□□□ -0.51
ECHDC1-220ENST00000528402 AREGP15514 252 aa11.84□□□□□ -0.51
ECHDC1-220ENST00000528402 PLA2G5P39877 138 aa11.84□□□□□ -0.51
ECHDC1-220ENST00000528402 AKR1C3P42330 323 aa11.84□□□□□ -0.51
ECHDC1-220ENST00000528402 RAB5BP61020 215 aa11.84□□□□□ -0.51
ECHDC1-220ENST00000528402 FAM78BQ5VT40 261 aa11.84□□□□□ -0.51
ECHDC1-220ENST00000528402 CFHR4Q92496 578 aa11.84□□□□□ -0.51
ECHDC1-220ENST00000528402 SPOCK3Q9BQ16 436 aa11.84□□□□□ -0.51
ECHDC1-220ENST00000528402 POLR3KQ9Y2Y1 108 aaPredicted RBP11.84□□□□□ -0.51
ECHDC1-220ENST00000528402 CHD8Q9HCK8 2581 aa11.83□□□□□ -0.52
ECHDC1-220ENST00000528402 TGOLN2O43493 480 aa11.83□□□□□ -0.52
ECHDC1-220ENST00000528402 EBI3Q14213 229 aa11.83□□□□□ -0.52
ECHDC1-220ENST00000528402 PLGLAQ15195 96 aa11.83□□□□□ -0.52
ECHDC1-220ENST00000528402 C10orf55Q5SWW7 151 aa11.83□□□□□ -0.52
ECHDC1-220ENST00000528402 CST9LP1Q5W188 147 aa11.83□□□□□ -0.52
ECHDC1-220ENST00000528402 VMO1Q7Z5L0 202 aa11.83□□□□□ -0.52
ECHDC1-220ENST00000528402 ANAPC16Q96DE5 110 aa11.83□□□□□ -0.52
ECHDC1-220ENST00000528402 UHRF2Q96PU4 802 aa11.83□□□□□ -0.52
ECHDC1-220ENST00000528402 TRGV9Q99603 122 aa11.83□□□□□ -0.52
ECHDC1-220ENST00000528402 SIRPDQ9H106 197 aa11.83□□□□□ -0.52
ECHDC1-220ENST00000528402 PARLQ9H300 379 aa11.83□□□□□ -0.52
ECHDC1-220ENST00000528402 SEPSECSQ9HD40 501 aaKnown RBP11.83□□□□□ -0.52
ECHDC1-220ENST00000528402 DNAJC4Q9NNZ3 241 aa11.83□□□□□ -0.52
ECHDC1-220ENST00000528402 TPSG1Q9NRR2 321 aa11.83□□□□□ -0.52
ECHDC1-220ENST00000528402 DOK5Q9P104 306 aa11.83□□□□□ -0.52
ECHDC1-220ENST00000528402 F11RQ9Y624 299 aaKnown RBP11.83□□□□□ -0.52
ECHDC1-220ENST00000528402 IGKV1OR2-108A0A075B7D4 117 aa11.82□□□□□ -0.52
ECHDC1-220ENST00000528402 ELOA3CA0A087WX78 387 aaPredicted RBP11.82□□□□□ -0.52
ECHDC1-220ENST00000528402 NDUFS8O00217 210 aa11.82□□□□□ -0.52
ECHDC1-220ENST00000528402 C8orf88P0DMB2 117 aa11.82□□□□□ -0.52
ECHDC1-220ENST00000528402 RAB5AP20339 215 aa11.82□□□□□ -0.52
ECHDC1-220ENST00000528402 UBE2E1P51965 193 aa11.82□□□□□ -0.52
ECHDC1-220ENST00000528402 BPIFB3P59826 476 aa11.82□□□□□ -0.52
ECHDC1-220ENST00000528402 LMO4P61968 165 aa11.82□□□□□ -0.52
ECHDC1-220ENST00000528402 TMEM116Q8NCL8 245 aa11.82□□□□□ -0.52
ECHDC1-220ENST00000528402 OR2T6Q8NHC8 308 aa11.82□□□□□ -0.52
ECHDC1-220ENST00000528402 IGFBPL1Q8WX77 278 aa11.82□□□□□ -0.52
ECHDC1-220ENST00000528402 SRSF12Q8WXF0 261 aaKnown RBP11.82□□□□□ -0.52
ECHDC1-220ENST00000528402 NPIPB3Q92617 1050 aa11.82□□□□□ -0.52
ECHDC1-220ENST00000528402 ACY3Q96HD9 319 aa11.82□□□□□ -0.52
ECHDC1-220ENST00000528402 YPEL4Q96NS1 127 aa11.82□□□□□ -0.52
ECHDC1-220ENST00000528402 FBXL15Q9H469 300 aa11.82□□□□□ -0.52
ECHDC1-220ENST00000528402 FNDC4Q9H6D8 234 aaPredicted RBP11.82□□□□□ -0.52
ECHDC1-220ENST00000528402 LPAR2Q9HBW0 351 aa11.82□□□□□ -0.52
ECHDC1-220ENST00000528402 TEX22C9J3V5 150 aa11.81□□□□□ -0.52
ECHDC1-220ENST00000528402 ZFP36P26651 326 aaKnown RBP11.81□□□□□ -0.52
ECHDC1-220ENST00000528402 CNTFRP26992 372 aa11.81□□□□□ -0.52
ECHDC1-220ENST00000528402 RND2P52198 227 aa11.81□□□□□ -0.52
ECHDC1-220ENST00000528402 DLX1P56177 255 aa11.81□□□□□ -0.52
ECHDC1-220ENST00000528402 MMDQ15546 238 aa11.81□□□□□ -0.52
ECHDC1-220ENST00000528402 MLANAQ16655 118 aa11.81□□□□□ -0.52
ECHDC1-220ENST00000528402 ZNF674Q2M3X9 581 aa11.81□□□□□ -0.52
ECHDC1-220ENST00000528402 C1QL4Q86Z23 238 aa11.81□□□□□ -0.52
ECHDC1-220ENST00000528402 FAM24BQ8N5W8 94 aa11.81□□□□□ -0.52
ECHDC1-220ENST00000528402 RPUSD4Q96CM3 377 aaKnown RBP11.81□□□□□ -0.52
ECHDC1-220ENST00000528402 SLC25A33Q9BSK2 321 aa11.81□□□□□ -0.52
ECHDC1-220ENST00000528402 BIN3Q9NQY0 253 aa11.81□□□□□ -0.52
ECHDC1-220ENST00000528402 HILPDAQ9Y5L2 63 aa11.81□□□□□ -0.52
ECHDC1-220ENST00000528402 NDUFS7O75251 213 aa11.8□□□□□ -0.52
ECHDC1-220ENST00000528402 EIF3GO75821 320 aaKnown RBP eCLIP11.8□□□□□ -0.52
ECHDC1-220ENST00000528402 TOX4O94842 621 aa11.8□□□□□ -0.52
ECHDC1-220ENST00000528402 CNIH1O95406 144 aa11.8□□□□□ -0.52
ECHDC1-220ENST00000528402 HOXB4P17483 251 aaPredicted RBP11.8□□□□□ -0.52
ECHDC1-220ENST00000528402 STXBP6Q8NFX7 210 aa11.8□□□□□ -0.52
ECHDC1-220ENST00000528402 ISOC2Q96AB3 205 aa11.8□□□□□ -0.52
ECHDC1-220ENST00000528402 EAF1Q96JC9 268 aaPredicted RBP11.8□□□□□ -0.52
ECHDC1-220ENST00000528402 C1RLQ9NZP8 487 aa11.8□□□□□ -0.52
ECHDC1-220ENST00000528402 PPP1R2P9O14990 202 aa11.79□□□□□ -0.52
ECHDC1-220ENST00000528402 FABP1P07148 127 aa11.79□□□□□ -0.52
ECHDC1-220ENST00000528402 DEFA4P12838 97 aa11.79□□□□□ -0.52
ECHDC1-220ENST00000528402 CD99P14209 185 aa11.79□□□□□ -0.52
ECHDC1-220ENST00000528402 RPL23P62829 140 aaKnown RBP11.79□□□□□ -0.52
ECHDC1-220ENST00000528402 GNB1P62873 340 aa11.79□□□□□ -0.52
ECHDC1-220ENST00000528402 C5orf64Q2M2E5 130 aa11.79□□□□□ -0.52
ECHDC1-220ENST00000528402 LDLRAD2Q5SZI1 272 aa11.79□□□□□ -0.52
ECHDC1-220ENST00000528402 MIR17HGQ75NE6 70 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms