RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 TEX22C9J3V5 150 aa16.54■□□□□ 0.24
VPS28-209ENST00000528142 NDUFA3O95167 84 aa16.54■□□□□ 0.24
VPS28-209ENST00000528142 MMDQ15546 238 aa16.54■□□□□ 0.24
VPS28-209ENST00000528142 FBLN7Q53RD9 439 aa16.54■□□□□ 0.24
VPS28-209ENST00000528142 SOHLH1Q5JUK2 328 aa16.54■□□□□ 0.24
VPS28-209ENST00000528142 MRPL41Q8IXM3 137 aaKnown RBP16.54■□□□□ 0.24
VPS28-209ENST00000528142 STPG3Q8N7X2 389 aa16.54■□□□□ 0.24
VPS28-209ENST00000528142 ZNF114Q8NC26 417 aa16.54■□□□□ 0.24
VPS28-209ENST00000528142 NRGNQ92686 78 aa16.54■□□□□ 0.24
VPS28-209ENST00000528142 TMPRSS5Q9H3S3 457 aa16.54■□□□□ 0.24
VPS28-209ENST00000528142 FNDC4Q9H6D8 234 aaPredicted RBP16.54■□□□□ 0.24
VPS28-209ENST00000528142 CELSR2Q9HCU4 2923 aa16.54■□□□□ 0.24
VPS28-209ENST00000528142 NBR2O15453 112 aa16.53■□□□□ 0.24
VPS28-209ENST00000528142 REG1AP05451 166 aa16.53■□□□□ 0.24
VPS28-209ENST00000528142 LINC00869P0C866 280 aa16.53■□□□□ 0.24
VPS28-209ENST00000528142 COX6B1P14854 86 aa16.53■□□□□ 0.24
VPS28-209ENST00000528142 AREGP15514 252 aa16.53■□□□□ 0.24
VPS28-209ENST00000528142 LGALS4P56470 323 aa16.53■□□□□ 0.24
VPS28-209ENST00000528142 TMEM249Q2WGJ8 235 aa16.53■□□□□ 0.24
VPS28-209ENST00000528142 AJUBAQ96IF1 538 aa16.53■□□□□ 0.24
VPS28-209ENST00000528142 TBL2Q9Y4P3 447 aaKnown RBP16.53■□□□□ 0.24
VPS28-209ENST00000528142 CD24P25063 80 aa16.52■□□□□ 0.24
VPS28-209ENST00000528142 GNB1P62873 340 aa16.52■□□□□ 0.24
VPS28-209ENST00000528142 OR2T6Q8NHC8 308 aa16.52■□□□□ 0.24
VPS28-209ENST00000528142 VAX2Q9UIW0 290 aa16.52■□□□□ 0.24
VPS28-209ENST00000528142 TMA7Q9Y2S6 64 aaKnown RBP16.52■□□□□ 0.24
VPS28-209ENST00000528142 NUPL2O15504 423 aaKnown RBP16.52■□□□□ 0.23
VPS28-209ENST00000528142 IFNA1P01562 189 aa16.52■□□□□ 0.23
VPS28-209ENST00000528142 SNRNP70P08621 437 aaKnown RBP16.52■□□□□ 0.23
VPS28-209ENST00000528142 EBI3Q14213 229 aa16.52■□□□□ 0.23
VPS28-209ENST00000528142 CLEC2AQ6UVW9 174 aa16.52■□□□□ 0.23
VPS28-209ENST00000528142 RBMS3Q6XE24 437 aaKnown RBP16.52■□□□□ 0.23
VPS28-209ENST00000528142 CYB561D1Q8N8Q1 229 aa16.52■□□□□ 0.23
VPS28-209ENST00000528142 OR2T10Q8NGZ9 312 aa16.52■□□□□ 0.23
VPS28-209ENST00000528142 SRSF12Q8WXF0 261 aaKnown RBP16.52■□□□□ 0.23
VPS28-209ENST00000528142 A0A1W2PPV4 95 aa16.51■□□□□ 0.23
VPS28-209ENST00000528142 MFAP2P55001 183 aa16.51■□□□□ 0.23
VPS28-209ENST00000528142 PLGLAQ15195 96 aa16.51■□□□□ 0.23
VPS28-209ENST00000528142 Q8N6K4 173 aa16.51■□□□□ 0.23
VPS28-209ENST00000528142 SLC35E1Q96K37 410 aa16.51■□□□□ 0.23
VPS28-209ENST00000528142 LPAR2Q9HBW0 351 aa16.51■□□□□ 0.23
VPS28-209ENST00000528142 DOPEY2Q9Y3R5 2298 aa16.5■□□□□ 0.23
VPS28-209ENST00000528142 PAX1P15863 534 aa16.5■□□□□ 0.23
VPS28-209ENST00000528142 OR10J1P30954 320 aa16.5■□□□□ 0.23
VPS28-209ENST00000528142 PAX8Q06710 450 aa16.5■□□□□ 0.23
VPS28-209ENST00000528142 MALSU1Q96EH3 234 aa16.5■□□□□ 0.23
VPS28-209ENST00000528142 IGHV4-30-2A0A087WSY4 118 aa16.49■□□□□ 0.23
VPS28-209ENST00000528142 SLC35E3Q7Z769 313 aa16.49■□□□□ 0.23
VPS28-209ENST00000528142 OR1P1Q8NH06 330 aa16.49■□□□□ 0.23
VPS28-209ENST00000528142 SRSF8Q9BRL6 282 aaKnown RBP16.49■□□□□ 0.23
VPS28-209ENST00000528142 CRYGCP07315 174 aa16.49■□□□□ 0.23
VPS28-209ENST00000528142 HES1Q14469 280 aa16.49■□□□□ 0.23
VPS28-209ENST00000528142 HIST2H2BCQ6DN03 193 aa16.49■□□□□ 0.23
VPS28-209ENST00000528142 PSMG3-AS1Q96PY0 264 aa16.49■□□□□ 0.23
VPS28-209ENST00000528142 SPG11Q96JI7 2443 aa16.49■□□□□ 0.23
VPS28-209ENST00000528142 CENPEQ02224 2701 aa16.48■□□□□ 0.23
VPS28-209ENST00000528142 STAG3L2P0CL84 134 aa16.48■□□□□ 0.23
VPS28-209ENST00000528142 STAG3L3P0CL85 134 aa16.48■□□□□ 0.23
VPS28-209ENST00000528142 APELAP0DMC3 54 aa16.48■□□□□ 0.23
VPS28-209ENST00000528142 KRTAP10-9P60411 292 aa16.48■□□□□ 0.23
VPS28-209ENST00000528142 C5orf64Q2M2E5 130 aa16.48■□□□□ 0.23
VPS28-209ENST00000528142 TMEM88Q6PEY1 159 aa16.48■□□□□ 0.23
VPS28-209ENST00000528142 C19orf35Q6ZS72 473 aa16.48■□□□□ 0.23
VPS28-209ENST00000528142 ABHD5Q8WTS1 349 aa16.48■□□□□ 0.23
VPS28-209ENST00000528142 GATAD1Q8WUU5 269 aa16.48■□□□□ 0.23
VPS28-209ENST00000528142 PERPQ96FX8 193 aa16.48■□□□□ 0.23
VPS28-209ENST00000528142 ACY3Q96HD9 319 aa16.48■□□□□ 0.23
VPS28-209ENST00000528142 SEPSECSQ9HD40 501 aaKnown RBP16.48■□□□□ 0.23
VPS28-209ENST00000528142 MANBALQ9NQG1 85 aa16.48■□□□□ 0.23
VPS28-209ENST00000528142 MRPL36Q9P0J6 103 aaKnown RBP16.48■□□□□ 0.23
VPS28-209ENST00000528142 TAGLN2P37802 199 aaKnown RBP16.47■□□□□ 0.23
VPS28-209ENST00000528142 PSMB3P49720 205 aa16.47■□□□□ 0.23
VPS28-209ENST00000528142 CD81P60033 236 aa16.47■□□□□ 0.23
VPS28-209ENST00000528142 AWAT1Q58HT5 328 aa16.47■□□□□ 0.23
VPS28-209ENST00000528142 FAM90A2PQ658T7 463 aa16.47■□□□□ 0.23
VPS28-209ENST00000528142 CBLN2Q8IUK8 224 aa16.47■□□□□ 0.23
VPS28-209ENST00000528142 ASH1LQ9NR48 2969 aaKnown RBP16.47■□□□□ 0.23
VPS28-209ENST00000528142 F11RQ9Y624 299 aaKnown RBP16.47■□□□□ 0.23
VPS28-209ENST00000528142 SAA4P35542 130 aa16.47■□□□□ 0.23
VPS28-209ENST00000528142 CEBPGP53567 150 aa16.47■□□□□ 0.23
VPS28-209ENST00000528142 MEF2BQ02080 365 aaPredicted RBP16.47■□□□□ 0.23
VPS28-209ENST00000528142 THAP8Q8NA92 274 aa16.47■□□□□ 0.23
VPS28-209ENST00000528142 NPIPB3Q92617 1050 aa16.47■□□□□ 0.23
VPS28-209ENST00000528142 DMRT1Q9Y5R6 373 aa16.47■□□□□ 0.23
VPS28-209ENST00000528142 GCN1Q92616 2671 aaKnown RBP16.46■□□□□ 0.23
VPS28-209ENST00000528142 IGKV1D-37A0A075B6S9 117 aa16.46■□□□□ 0.23
VPS28-209ENST00000528142 GATA2P23769 480 aaPredicted RBP16.46■□□□□ 0.23
VPS28-209ENST00000528142 RHOBP62745 196 aa16.46■□□□□ 0.23
VPS28-209ENST00000528142 ETFRF1Q6IPR1 90 aa16.46■□□□□ 0.23
VPS28-209ENST00000528142 PUS1Q9Y606 427 aaKnown RBP eCLIP16.46■□□□□ 0.23
VPS28-209ENST00000528142 CENPVL3A0A0U1RRI6 287 aa16.45■□□□□ 0.22
VPS28-209ENST00000528142 C7orf77A4D0Y5 90 aa16.45■□□□□ 0.22
VPS28-209ENST00000528142 H3BQ15 152 aa16.45■□□□□ 0.22
VPS28-209ENST00000528142 PLXNB1O43157 2135 aa16.45■□□□□ 0.22
VPS28-209ENST00000528142 NDUFS6O75380 124 aaKnown RBP16.45■□□□□ 0.22
VPS28-209ENST00000528142 CNIH1O95406 144 aa16.45■□□□□ 0.22
VPS28-209ENST00000528142 IGHV3-48P01763 117 aa16.45■□□□□ 0.22
VPS28-209ENST00000528142 SPATA31B1PQ5VZV4 182 aa16.45■□□□□ 0.22
VPS28-209ENST00000528142 CYP2G1PQ6ZSU1 146 aa16.45■□□□□ 0.22
VPS28-209ENST00000528142 PIP4P2Q8N4L2 257 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms