RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 ARF6P62330 175 aa12.77□□□□□ -0.36
USH1C-204ENST00000526313 RPL23P62829 140 aaKnown RBP12.77□□□□□ -0.36
USH1C-204ENST00000526313 TPTE2P1Q5T6R2 138 aa12.77□□□□□ -0.36
USH1C-204ENST00000526313 OR2T6Q8NHC8 308 aa12.77□□□□□ -0.36
USH1C-204ENST00000526313 RPUSD4Q96CM3 377 aaKnown RBP12.77□□□□□ -0.36
USH1C-204ENST00000526313 KLF2Q9Y5W3 355 aaPredicted RBP12.77□□□□□ -0.36
USH1C-204ENST00000526313 ODF3BA8MYP8 253 aa12.77□□□□□ -0.37
USH1C-204ENST00000526313 F6UZH7 168 aa12.77□□□□□ -0.37
USH1C-204ENST00000526313 CLN5O75503 358 aa12.77□□□□□ -0.37
USH1C-204ENST00000526313 COMPP49747 757 aaPredicted RBP12.77□□□□□ -0.37
USH1C-204ENST00000526313 THAP8Q8NA92 274 aa12.77□□□□□ -0.37
USH1C-204ENST00000526313 Q8WTZ3 238 aa12.77□□□□□ -0.37
USH1C-204ENST00000526313 BIN3Q9NQY0 253 aa12.77□□□□□ -0.37
USH1C-204ENST00000526313 DPM3Q9P2X0 92 aa12.77□□□□□ -0.37
USH1C-204ENST00000526313 FUT9Q9Y231 359 aa12.77□□□□□ -0.37
USH1C-204ENST00000526313 PSMB11A5LHX3 300 aa12.76□□□□□ -0.37
USH1C-204ENST00000526313 VENTXO95231 258 aa12.76□□□□□ -0.37
USH1C-204ENST00000526313 CRYGCP07315 174 aa12.76□□□□□ -0.37
USH1C-204ENST00000526313 OR5G3P0C626 314 aa12.76□□□□□ -0.37
USH1C-204ENST00000526313 HTR1DP28221 377 aa12.76□□□□□ -0.37
USH1C-204ENST00000526313 RPL27AP46776 148 aaKnown RBP12.76□□□□□ -0.37
USH1C-204ENST00000526313 ATP5G3P48201 142 aa12.76□□□□□ -0.37
USH1C-204ENST00000526313 GNB1P62873 340 aa12.76□□□□□ -0.37
USH1C-204ENST00000526313 PAX2Q02962 417 aa12.76□□□□□ -0.37
USH1C-204ENST00000526313 PPP1R27Q86WC6 154 aa12.76□□□□□ -0.37
USH1C-204ENST00000526313 MRPL41Q8IXM3 137 aaKnown RBP12.76□□□□□ -0.37
USH1C-204ENST00000526313 CLDN34H7C241 214 aa12.76□□□□□ -0.37
USH1C-204ENST00000526313 CDKN1AP38936 164 aa12.76□□□□□ -0.37
USH1C-204ENST00000526313 GPR6P46095 362 aaPredicted RBP12.76□□□□□ -0.37
USH1C-204ENST00000526313 ZNF674Q2M3X9 581 aa12.76□□□□□ -0.37
USH1C-204ENST00000526313 ZNF343Q6P1L6 599 aa12.76□□□□□ -0.37
USH1C-204ENST00000526313 MIR17HGQ75NE6 70 aa12.76□□□□□ -0.37
USH1C-204ENST00000526313 KIR3DL3Q8N743 410 aa12.76□□□□□ -0.37
USH1C-204ENST00000526313 DOK5Q9P104 306 aa12.76□□□□□ -0.37
USH1C-204ENST00000526313 ARL2-SNX15V9GYD0 113 aa12.76□□□□□ -0.37
USH1C-204ENST00000526313 FOXH1O75593 365 aa12.75□□□□□ -0.37
USH1C-204ENST00000526313 EFNA4P52798 201 aa12.75□□□□□ -0.37
USH1C-204ENST00000526313 UBE2G2P60604 165 aa12.75□□□□□ -0.37
USH1C-204ENST00000526313 SSBP2P81877 361 aaPredicted RBP12.75□□□□□ -0.37
USH1C-204ENST00000526313 FAM78BQ5VT40 261 aa12.75□□□□□ -0.37
USH1C-204ENST00000526313 LINC00518Q8N0U6 118 aa12.75□□□□□ -0.37
USH1C-204ENST00000526313 ZFP82Q8N141 532 aa12.75□□□□□ -0.37
USH1C-204ENST00000526313 CFHR4Q92496 578 aa12.75□□□□□ -0.37
USH1C-204ENST00000526313 METTL1Q9UBP6 276 aaKnown RBP12.75□□□□□ -0.37
USH1C-204ENST00000526313 PLXNB1O43157 2135 aa12.75□□□□□ -0.37
USH1C-204ENST00000526313 ARHGAP32A7KAX9 2087 aa12.75□□□□□ -0.37
USH1C-204ENST00000526313 IGKV1D-37A0A075B6S9 117 aa12.74□□□□□ -0.37
USH1C-204ENST00000526313 NDUFS7O75251 213 aa12.74□□□□□ -0.37
USH1C-204ENST00000526313 MT-CO2P00403 227 aa12.74□□□□□ -0.37
USH1C-204ENST00000526313 CXCL1P09341 107 aa12.74□□□□□ -0.37
USH1C-204ENST00000526313 GATA2P23769 480 aaPredicted RBP12.74□□□□□ -0.37
USH1C-204ENST00000526313 CST9LP1Q5W188 147 aa12.74□□□□□ -0.37
USH1C-204ENST00000526313 OR51G1Q8NGK1 321 aa12.74□□□□□ -0.37
USH1C-204ENST00000526313 YTHDF2Q9Y5A9 579 aaKnown RBP12.74□□□□□ -0.37
USH1C-204ENST00000526313 NAV3Q8IVL0 2385 aa12.74□□□□□ -0.37
USH1C-204ENST00000526313 TEX22C9J3V5 150 aa12.74□□□□□ -0.37
USH1C-204ENST00000526313 TIMM23O14925 209 aa12.74□□□□□ -0.37
USH1C-204ENST00000526313 MFAP2P55001 183 aa12.74□□□□□ -0.37
USH1C-204ENST00000526313 ADIRFQ15847 76 aa12.74□□□□□ -0.37
USH1C-204ENST00000526313 TNXAQ16473 311 aa12.74□□□□□ -0.37
USH1C-204ENST00000526313 C2CD4CQ8TF44 421 aa12.74□□□□□ -0.37
USH1C-204ENST00000526313 TMEM37Q8WXS4 190 aa12.74□□□□□ -0.37
USH1C-204ENST00000526313 UBTD1Q9HAC8 227 aa12.74□□□□□ -0.37
USH1C-204ENST00000526313 ACTL6BO94805 426 aa12.73□□□□□ -0.37
USH1C-204ENST00000526313 AREGP15514 252 aa12.73□□□□□ -0.37
USH1C-204ENST00000526313 CEACAM3P40198 252 aa12.73□□□□□ -0.37
USH1C-204ENST00000526313 OR1P1Q8NH06 330 aa12.73□□□□□ -0.37
USH1C-204ENST00000526313 ZNF503Q96F45 646 aa12.73□□□□□ -0.37
USH1C-204ENST00000526313 ACY3Q96HD9 319 aa12.73□□□□□ -0.37
USH1C-204ENST00000526313 TECRQ9NZ01 308 aaKnown RBP12.73□□□□□ -0.37
USH1C-204ENST00000526313 MRPL36Q9P0J6 103 aaKnown RBP12.73□□□□□ -0.37
USH1C-204ENST00000526313 TCRBV4S1A1TA0A5B7 111 aa12.73□□□□□ -0.37
USH1C-204ENST00000526313 OVOL3O00110 214 aa12.73□□□□□ -0.37
USH1C-204ENST00000526313 IGHV2-5P01817 119 aa12.73□□□□□ -0.37
USH1C-204ENST00000526313 ZFP36P26651 326 aaKnown RBP12.73□□□□□ -0.37
USH1C-204ENST00000526313 ETFRF1Q6IPR1 90 aa12.73□□□□□ -0.37
USH1C-204ENST00000526313 NPIPB3Q92617 1050 aa12.73□□□□□ -0.37
USH1C-204ENST00000526313 RNF2Q99496 336 aa12.73□□□□□ -0.37
USH1C-204ENST00000526313 SSX3Q99909 188 aa12.73□□□□□ -0.37
USH1C-204ENST00000526313 SRSF8Q9BRL6 282 aaKnown RBP12.73□□□□□ -0.37
USH1C-204ENST00000526313 SLC25A33Q9BSK2 321 aa12.73□□□□□ -0.37
USH1C-204ENST00000526313 MRPL32Q9BYC8 188 aaKnown RBP12.73□□□□□ -0.37
USH1C-204ENST00000526313 FBXL15Q9H469 300 aa12.73□□□□□ -0.37
USH1C-204ENST00000526313 TRBV24-1A0A075B6N3 115 aa12.72□□□□□ -0.37
USH1C-204ENST00000526313 NDUFB4O95168 129 aa12.72□□□□□ -0.37
USH1C-204ENST00000526313 REG1AP05451 166 aa12.72□□□□□ -0.37
USH1C-204ENST00000526313 PQLC2Q6ZP29 291 aa12.72□□□□□ -0.37
USH1C-204ENST00000526313 NPBQ8NG41 125 aa12.72□□□□□ -0.37
USH1C-204ENST00000526313 C11orf52Q96A22 123 aa12.72□□□□□ -0.37
USH1C-204ENST00000526313 TMEM167BQ9NRX6 74 aa12.72□□□□□ -0.37
USH1C-204ENST00000526313 URGCP-MRPS24S4R325 110 aa12.72□□□□□ -0.37
USH1C-204ENST00000526313 TGIF2-C20orf24A0A0A6YYL0 155 aa12.71□□□□□ -0.37
USH1C-204ENST00000526313 C5orf52A6NGY3 159 aa12.71□□□□□ -0.37
USH1C-204ENST00000526313 FCN1O00602 326 aa12.71□□□□□ -0.37
USH1C-204ENST00000526313 PFN1P07737 140 aaKnown RBP12.71□□□□□ -0.37
USH1C-204ENST00000526313 AKR1D1P51857 326 aa12.71□□□□□ -0.37
USH1C-204ENST00000526313 SELENOTP62341 195 aa12.71□□□□□ -0.37
USH1C-204ENST00000526313 KLRD1Q13241 179 aa12.71□□□□□ -0.37
USH1C-204ENST00000526313 DNAJC4Q9NNZ3 241 aa12.71□□□□□ -0.37
USH1C-204ENST00000526313 F11RQ9Y624 299 aaKnown RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms