RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 FOXA2Q9Y261 457 aaPredicted RBP8.31□□□□□ -1.08
MCF2-209ENST00000520602 S4R3C0 116 aa8.31□□□□□ -1.08
MCF2-209ENST00000520602 FREM2Q5SZK8 3169 aa8.31□□□□□ -1.08
MCF2-209ENST00000520602 A0A087WWC5 75 aa8.3□□□□□ -1.08
MCF2-209ENST00000520602 PROP1O75360 226 aa8.3□□□□□ -1.08
MCF2-209ENST00000520602 DIAPH2-AS1Q14236 149 aa8.3□□□□□ -1.08
MCF2-209ENST00000520602 Q8NA96 180 aa8.3□□□□□ -1.08
MCF2-209ENST00000520602 MIOXQ9UGB7 285 aa8.3□□□□□ -1.08
MCF2-209ENST00000520602 NAT8BQ9UHF3 227 aa8.3□□□□□ -1.08
MCF2-209ENST00000520602 PLXNB1O43157 2135 aa8.3□□□□□ -1.08
MCF2-209ENST00000520602 FABP1P07148 127 aa8.3□□□□□ -1.08
MCF2-209ENST00000520602 C1QTNF9P0C862 333 aa8.3□□□□□ -1.08
MCF2-209ENST00000520602 IGHV1-8P0DP01 117 aa8.3□□□□□ -1.08
MCF2-209ENST00000520602 BRWD1-AS2P59051 145 aa8.3□□□□□ -1.08
MCF2-209ENST00000520602 C3orf36Q3SXR2 165 aa8.3□□□□□ -1.08
MCF2-209ENST00000520602 LOC105371242A0A075B767 164 aa8.3□□□□□ -1.08
MCF2-209ENST00000520602 PMS2P11Q13670 270 aa8.3□□□□□ -1.08
MCF2-209ENST00000520602 FXYD3Q14802 87 aa8.3□□□□□ -1.08
MCF2-209ENST00000520602 RASL11BQ9BPW5 248 aa8.3□□□□□ -1.08
MCF2-209ENST00000520602 TRBV23-1A0A0A0MS06 115 aa8.29□□□□□ -1.08
MCF2-209ENST00000520602 SRRM4A7MD48 611 aaKnown RBP8.29□□□□□ -1.08
MCF2-209ENST00000520602 TSTD3H0UI37 97 aa8.29□□□□□ -1.08
MCF2-209ENST00000520602 H0YJW9 148 aa8.29□□□□□ -1.08
MCF2-209ENST00000520602 FOXH1O75593 365 aa8.29□□□□□ -1.08
MCF2-209ENST00000520602 PAX6P26367 422 aa8.29□□□□□ -1.08
MCF2-209ENST00000520602 IER3P46695 156 aa8.29□□□□□ -1.08
MCF2-209ENST00000520602 MRPL54Q6P161 138 aaKnown RBP8.29□□□□□ -1.08
MCF2-209ENST00000520602 ZNF295-AS1Q8N0V1 137 aa8.29□□□□□ -1.08
MCF2-209ENST00000520602 Q8TCH9 128 aa8.29□□□□□ -1.08
MCF2-209ENST00000520602 SLC17A3O00476 420 aa8.29□□□□□ -1.08
MCF2-209ENST00000520602 VDAC2P45880 294 aaPredicted RBP8.29□□□□□ -1.08
MCF2-209ENST00000520602 TMEM18Q96B42 140 aa8.29□□□□□ -1.08
MCF2-209ENST00000520602 FAM103A1Q9BTL3 118 aaKnown RBP8.29□□□□□ -1.08
MCF2-209ENST00000520602 GNG7O60262 68 aa8.29□□□□□ -1.08
MCF2-209ENST00000520602 HYPMO75409 117 aa8.29□□□□□ -1.08
MCF2-209ENST00000520602 CA7P43166 264 aa8.29□□□□□ -1.08
MCF2-209ENST00000520602 CD69Q07108 199 aa8.29□□□□□ -1.08
MCF2-209ENST00000520602 RPEL1Q2QD12 228 aa8.29□□□□□ -1.08
MCF2-209ENST00000520602 RNF2Q99496 336 aa8.29□□□□□ -1.08
MCF2-209ENST00000520602 TMUB1Q9BVT8 246 aa8.29□□□□□ -1.08
MCF2-209ENST00000520602 BET1LQ9NYM9 111 aa8.29□□□□□ -1.08
MCF2-209ENST00000520602 SMIM6P0DI80 62 aa8.28□□□□□ -1.08
MCF2-209ENST00000520602 OR5I1Q13606 314 aa8.28□□□□□ -1.08
MCF2-209ENST00000520602 GAMTQ14353 236 aa8.28□□□□□ -1.08
MCF2-209ENST00000520602 PERPQ96FX8 193 aa8.28□□□□□ -1.08
MCF2-209ENST00000520602 PACRGQ96M98 296 aaPredicted RBP8.28□□□□□ -1.08
MCF2-209ENST00000520602 TXNDC17Q9BRA2 123 aa8.28□□□□□ -1.08
MCF2-209ENST00000520602 CHD3Q12873 2000 aaKnown RBP8.28□□□□□ -1.08
MCF2-209ENST00000520602 NTF3P20783 257 aa8.28□□□□□ -1.08
MCF2-209ENST00000520602 RPL29P47914 159 aaKnown RBP8.28□□□□□ -1.08
MCF2-209ENST00000520602 CAMPP49913 170 aa8.28□□□□□ -1.08
MCF2-209ENST00000520602 SELENOTP62341 195 aa8.28□□□□□ -1.08
MCF2-209ENST00000520602 FAM222BQ8WU58 562 aa8.28□□□□□ -1.08
MCF2-209ENST00000520602 SFRP2Q96HF1 295 aa8.28□□□□□ -1.08
MCF2-209ENST00000520602 PRO1933Q9H354 126 aa8.28□□□□□ -1.08
MCF2-209ENST00000520602 IGHV2-26A0A0B4J1V2 119 aa8.28□□□□□ -1.08
MCF2-209ENST00000520602 TRAV5A0A0B4J249 113 aa8.28□□□□□ -1.08
MCF2-209ENST00000520602 STAG3L2P0CL84 134 aa8.28□□□□□ -1.08
MCF2-209ENST00000520602 STAG3L3P0CL85 134 aa8.28□□□□□ -1.08
MCF2-209ENST00000520602 TDGF1P3P51864 188 aa8.28□□□□□ -1.08
MCF2-209ENST00000520602 TEX36Q5VZQ5 186 aa8.28□□□□□ -1.08
MCF2-209ENST00000520602 TMEM14BQ9NUH8 114 aa8.28□□□□□ -1.08
MCF2-209ENST00000520602 PITPNC1Q9UKF7 332 aa8.28□□□□□ -1.08
MCF2-209ENST00000520602 ZNF257Q9Y2Q1 563 aa8.28□□□□□ -1.08
MCF2-209ENST00000520602 TRAV34A0A0B4J273 112 aa8.27□□□□□ -1.08
MCF2-209ENST00000520602 PGPA6NDG6 321 aa8.27□□□□□ -1.08
MCF2-209ENST00000520602 GATCO43716 136 aaKnown RBP8.27□□□□□ -1.08
MCF2-209ENST00000520602 LOXP28300 417 aaPredicted RBP8.27□□□□□ -1.08
MCF2-209ENST00000520602 LCN2P80188 198 aa8.27□□□□□ -1.08
MCF2-209ENST00000520602 DEFA6Q01524 100 aa8.27□□□□□ -1.08
MCF2-209ENST00000520602 CENPWQ5EE01 88 aa8.27□□□□□ -1.08
MCF2-209ENST00000520602 LINC00305Q7Z4B0 112 aa8.27□□□□□ -1.08
MCF2-209ENST00000520602 S100A7AQ86SG5 101 aa8.27□□□□□ -1.08
MCF2-209ENST00000520602 OR8I2Q8N0Y5 310 aa8.27□□□□□ -1.08
MCF2-209ENST00000520602 SLC25A33Q9BSK2 321 aa8.27□□□□□ -1.08
MCF2-209ENST00000520602 DPM3Q9P2X0 92 aa8.27□□□□□ -1.08
MCF2-209ENST00000520602 DYSFO75923 2080 aa8.27□□□□□ -1.08
MCF2-209ENST00000520602 IGHV3-35A0A0C4DH35 117 aa8.27□□□□□ -1.09
MCF2-209ENST00000520602 ITGB1BP1O14713 200 aa8.27□□□□□ -1.09
MCF2-209ENST00000520602 TMEM11P17152 192 aa8.27□□□□□ -1.09
MCF2-209ENST00000520602 OR51M1Q9H341 326 aa8.27□□□□□ -1.09
MCF2-209ENST00000520602 CTSZQ9UBR2 303 aa8.27□□□□□ -1.09
MCF2-209ENST00000520602 SNURFLB1AK76 121 aa8.27□□□□□ -1.09
MCF2-209ENST00000520602 HIST1H2BKO60814 126 aa8.27□□□□□ -1.09
MCF2-209ENST00000520602 VENTXO95231 258 aa8.27□□□□□ -1.09
MCF2-209ENST00000520602 HIST1H2BJP06899 126 aa8.27□□□□□ -1.09
MCF2-209ENST00000520602 PYYP10082 97 aa8.27□□□□□ -1.09
MCF2-209ENST00000520602 HIST1H2BOP23527 126 aa8.27□□□□□ -1.09
MCF2-209ENST00000520602 HIST1H2BBP33778 126 aa8.27□□□□□ -1.09
MCF2-209ENST00000520602 CDX1P47902 265 aaPredicted RBP8.27□□□□□ -1.09
MCF2-209ENST00000520602 HIST1H2BDP58876 126 aa8.27□□□□□ -1.09
MCF2-209ENST00000520602 HIST1H2BCP62807 126 aa8.27□□□□□ -1.09
MCF2-209ENST00000520602 NHLH1Q02575 133 aa8.27□□□□□ -1.09
MCF2-209ENST00000520602 HIST2H2BEQ16778 126 aa8.27□□□□□ -1.09
MCF2-209ENST00000520602 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.27□□□□□ -1.09
MCF2-209ENST00000520602 OR1L6Q8NGR2 347 aa8.27□□□□□ -1.09
MCF2-209ENST00000520602 OCC1Q8TAD7 63 aa8.27□□□□□ -1.09
MCF2-209ENST00000520602 HIST1H2BHQ93079 126 aa8.27□□□□□ -1.09
MCF2-209ENST00000520602 HIST1H2BNQ99877 126 aa8.27□□□□□ -1.09
MCF2-209ENST00000520602 HIST1H2BMQ99879 126 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms