RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 SAMD5Q5TGI4 173 aa11.18□□□□□ -0.62
TCOF1-214ENST00000515035 PNKDQ8N490 385 aa11.18□□□□□ -0.62
TCOF1-214ENST00000515035 RBBP6Q7Z6E9 1792 aaKnown RBP11.18□□□□□ -0.62
TCOF1-214ENST00000515035 J3QW42 95 aa11.18□□□□□ -0.62
TCOF1-214ENST00000515035 GAGE13Q4V321 117 aa11.18□□□□□ -0.62
TCOF1-214ENST00000515035 COQ2Q96H96 371 aa11.18□□□□□ -0.62
TCOF1-214ENST00000515035 WFDC1Q9HC57 220 aa11.18□□□□□ -0.62
TCOF1-214ENST00000515035 TNFRSF18Q9Y5U5 241 aa11.18□□□□□ -0.62
TCOF1-214ENST00000515035 GREB1LQ9C091 1923 aaPredicted RBP11.17□□□□□ -0.62
TCOF1-214ENST00000515035 A8MWV9 139 aa11.17□□□□□ -0.62
TCOF1-214ENST00000515035 DPM2O94777 84 aa11.17□□□□□ -0.62
TCOF1-214ENST00000515035 IGLV3-19P01714 112 aa11.17□□□□□ -0.62
TCOF1-214ENST00000515035 TMEM144Q7Z5S9 345 aa11.17□□□□□ -0.62
TCOF1-214ENST00000515035 EEF1AKMT3Q96AZ1 226 aa11.17□□□□□ -0.62
TCOF1-214ENST00000515035 C2orf88Q9BSF0 95 aa11.17□□□□□ -0.62
TCOF1-214ENST00000515035 IGHV3-49A0A0A0MS15 119 aa11.17□□□□□ -0.62
TCOF1-214ENST00000515035 TRBV7-9A0A0J9YWB2 115 aa11.17□□□□□ -0.62
TCOF1-214ENST00000515035 HOXA3O43365 443 aaPredicted RBP11.17□□□□□ -0.62
TCOF1-214ENST00000515035 REG4Q9BYZ8 158 aa11.17□□□□□ -0.62
TCOF1-214ENST00000515035 IGHV4-39P01824 125 aa11.17□□□□□ -0.62
TCOF1-214ENST00000515035 NUDT10Q8NFP7 164 aa11.17□□□□□ -0.62
TCOF1-214ENST00000515035 ZDBF2Q9HCK1 2354 aa11.17□□□□□ -0.62
TCOF1-214ENST00000515035 ID3Q02535 119 aa11.17□□□□□ -0.62
TCOF1-214ENST00000515035 RNASEH2CQ8TDP1 164 aaKnown RBP11.17□□□□□ -0.62
TCOF1-214ENST00000515035 ARHGEF17Q96PE2 2063 aaPredicted RBP11.16□□□□□ -0.62
TCOF1-214ENST00000515035 TRAV12-3A0A0B4J271 114 aa11.16□□□□□ -0.62
TCOF1-214ENST00000515035 IGKV1D-13A0A0B4J2D9 117 aa11.16□□□□□ -0.62
TCOF1-214ENST00000515035 H3BRM9 83 aa11.16□□□□□ -0.62
TCOF1-214ENST00000515035 IGKV1-13P0DP09 117 aa11.16□□□□□ -0.62
TCOF1-214ENST00000515035 GNG5P63218 68 aa11.16□□□□□ -0.62
TCOF1-214ENST00000515035 OR13A1Q8NGR1 328 aa11.16□□□□□ -0.62
TCOF1-214ENST00000515035 NAA38Q9BRA0 125 aaKnown RBP11.16□□□□□ -0.62
TCOF1-214ENST00000515035 FOXA2Q9Y261 457 aaPredicted RBP11.16□□□□□ -0.62
TCOF1-214ENST00000515035 S4R3C0 116 aa11.16□□□□□ -0.62
TCOF1-214ENST00000515035 CD55P08174 381 aa11.16□□□□□ -0.62
TCOF1-214ENST00000515035 ACP7Q6ZNF0 438 aa11.16□□□□□ -0.62
TCOF1-214ENST00000515035 SNRPD3P62318 126 aaKnown RBP11.16□□□□□ -0.62
TCOF1-214ENST00000515035 GAGE2BQ13066 116 aa11.16□□□□□ -0.62
TCOF1-214ENST00000515035 GAGE2EQ4V326 116 aa11.16□□□□□ -0.62
TCOF1-214ENST00000515035 FBLN5Q9UBX5 448 aa11.16□□□□□ -0.62
TCOF1-214ENST00000515035 GAGE2DQ9UEU5 116 aa11.16□□□□□ -0.62
TCOF1-214ENST00000515035 PAX2Q02962 417 aa11.16□□□□□ -0.62
TCOF1-214ENST00000515035 MAJINQ3KP22 176 aa11.16□□□□□ -0.62
TCOF1-214ENST00000515035 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.16□□□□□ -0.62
TCOF1-214ENST00000515035 JMJD8Q96S16 334 aa11.16□□□□□ -0.62
TCOF1-214ENST00000515035 A0A1W2PRE2 83 aa11.15□□□□□ -0.62
TCOF1-214ENST00000515035 GZMBP10144 247 aa11.15□□□□□ -0.62
TCOF1-214ENST00000515035 MPZP25189 248 aa11.15□□□□□ -0.62
TCOF1-214ENST00000515035 CYSLTR1Q9Y271 337 aa11.15□□□□□ -0.62
TCOF1-214ENST00000515035 SELENOKQ9Y6D0 94 aa11.15□□□□□ -0.62
TCOF1-214ENST00000515035 SPTBN1Q01082 2364 aaKnown RBP11.15□□□□□ -0.62
TCOF1-214ENST00000515035 EP300Q09472 2414 aaPredicted RBP11.15□□□□□ -0.62
TCOF1-214ENST00000515035 A0A087WV48 116 aa11.15□□□□□ -0.62
TCOF1-214ENST00000515035 TRBV6-7A0A0A0MS04 114 aa11.15□□□□□ -0.62
TCOF1-214ENST00000515035 TPTE2P1Q5T6R2 138 aa11.15□□□□□ -0.62
TCOF1-214ENST00000515035 CHCHD1Q96BP2 118 aaKnown RBP11.15□□□□□ -0.62
TCOF1-214ENST00000515035 FBXL15Q9H469 300 aa11.15□□□□□ -0.62
TCOF1-214ENST00000515035 IGHV3-66A0A0C4DH42 116 aa11.15□□□□□ -0.63
TCOF1-214ENST00000515035 MS4A6AQ9H2W1 248 aa11.15□□□□□ -0.63
TCOF1-214ENST00000515035 TRAV8-4A0A0B4J246 113 aa11.14□□□□□ -0.63
TCOF1-214ENST00000515035 COX6A1P12074 109 aa11.14□□□□□ -0.63
TCOF1-214ENST00000515035 DEPPQ9NTK1 212 aa11.14□□□□□ -0.63
TCOF1-214ENST00000515035 IFI27L1Q96BM0 104 aa11.14□□□□□ -0.63
TCOF1-214ENST00000515035 VSIRQ9H7M9 311 aa11.14□□□□□ -0.63
TCOF1-214ENST00000515035 TOMM7Q9P0U1 55 aa11.14□□□□□ -0.63
TCOF1-214ENST00000515035 IGHV3-23P01764 117 aa11.14□□□□□ -0.63
TCOF1-214ENST00000515035 LINC00114Q6XXX2 140 aa11.14□□□□□ -0.63
TCOF1-214ENST00000515035 DCTN5Q9BTE1 182 aa11.14□□□□□ -0.63
TCOF1-214ENST00000515035 OTORQ9NRC9 128 aa11.14□□□□□ -0.63
TCOF1-214ENST00000515035 CYTL1Q9NRR1 136 aa11.14□□□□□ -0.63
TCOF1-214ENST00000515035 PLXNA1Q9UIW2 1896 aa11.14□□□□□ -0.63
TCOF1-214ENST00000515035 LURAP1LQ8IV03 231 aa11.14□□□□□ -0.63
TCOF1-214ENST00000515035 NPFFR1Q9GZQ6 430 aa11.14□□□□□ -0.63
TCOF1-214ENST00000515035 NXT2Q9NPJ8 142 aaKnown RBP11.14□□□□□ -0.63
TCOF1-214ENST00000515035 EPDR1Q9UM22 224 aa11.14□□□□□ -0.63
TCOF1-214ENST00000515035 A0A0G2JLM5 398 aa11.13□□□□□ -0.63
TCOF1-214ENST00000515035 CNTFRP26992 372 aa11.13□□□□□ -0.63
TCOF1-214ENST00000515035 TIMP3P35625 211 aa11.13□□□□□ -0.63
TCOF1-214ENST00000515035 SRSF4Q08170 494 aaKnown RBP11.13□□□□□ -0.63
TCOF1-214ENST00000515035 OR9G4Q8NGQ1 327 aa11.13□□□□□ -0.63
TCOF1-214ENST00000515035 PLPPR1Q8TBJ4 325 aa11.13□□□□□ -0.63
TCOF1-214ENST00000515035 TMEM101Q96IK0 257 aa11.13□□□□□ -0.63
TCOF1-214ENST00000515035 C11orf68Q9H3H3 251 aaKnown RBP11.13□□□□□ -0.63
TCOF1-214ENST00000515035 C21orf62Q9NYP8 219 aa11.13□□□□□ -0.63
TCOF1-214ENST00000515035 CDCP2Q5VXM1 449 aa11.13□□□□□ -0.63
TCOF1-214ENST00000515035 ZFAND6Q6FIF0 208 aa11.13□□□□□ -0.63
TCOF1-214ENST00000515035 DUX5Q96PT3 197 aa11.13□□□□□ -0.63
TCOF1-214ENST00000515035 PRR19A6NJB7 356 aa11.13□□□□□ -0.63
TCOF1-214ENST00000515035 ZNF815PA8K554 130 aa11.13□□□□□ -0.63
TCOF1-214ENST00000515035 UBE2V1Q13404 147 aa11.13□□□□□ -0.63
TCOF1-214ENST00000515035 PCOLCEQ15113 449 aa11.13□□□□□ -0.63
TCOF1-214ENST00000515035 TIMP4Q99727 224 aa11.13□□□□□ -0.63
TCOF1-214ENST00000515035 PGPEP1Q9NXJ5 209 aa11.13□□□□□ -0.63
TCOF1-214ENST00000515035 CRIM1Q9NZV1 1036 aa11.13□□□□□ -0.63
TCOF1-214ENST00000515035 SEMA5BQ9P283 1151 aa11.13□□□□□ -0.63
TCOF1-214ENST00000515035 LOC285556D6RIA3 1793 aa11.13□□□□□ -0.63
TCOF1-214ENST00000515035 TMEM256Q8N2U0 113 aa11.13□□□□□ -0.63
TCOF1-214ENST00000515035 FABP5P3A8MUU1 101 aa11.12□□□□□ -0.63
TCOF1-214ENST00000515035 IGKCP01834 107 aa11.12□□□□□ -0.63
TCOF1-214ENST00000515035 PYYP10082 97 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms