RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 DUX3Q96PT4 197 aa9.44□□□□□ -0.9
LIMCH1-217ENST00000512946 FAM231BA6NCW3 169 aa9.44□□□□□ -0.9
LIMCH1-217ENST00000512946 VCYO14598 125 aa9.44□□□□□ -0.9
LIMCH1-217ENST00000512946 GFI1BQ5VTD9 330 aa9.44□□□□□ -0.9
LIMCH1-217ENST00000512946 GFRA4Q9GZZ7 299 aa9.44□□□□□ -0.9
LIMCH1-217ENST00000512946 RNF115Q9Y4L5 304 aa9.44□□□□□ -0.9
LIMCH1-217ENST00000512946 VEGFBP49765 207 aa9.43□□□□□ -0.9
LIMCH1-217ENST00000512946 CT55Q8WUE5 264 aa9.43□□□□□ -0.9
LIMCH1-217ENST00000512946 STRCQ7RTU9 1775 aa9.43□□□□□ -0.9
LIMCH1-217ENST00000512946 IGHV3OR16-12A0A075B7B8 117 aa9.43□□□□□ -0.9
LIMCH1-217ENST00000512946 H3BTX0 84 aa9.43□□□□□ -0.9
LIMCH1-217ENST00000512946 EREGO14944 169 aa9.43□□□□□ -0.9
LIMCH1-217ENST00000512946 ZIC3O60481 467 aa9.43□□□□□ -0.9
LIMCH1-217ENST00000512946 IGHV2-70P01814 119 aa9.43□□□□□ -0.9
LIMCH1-217ENST00000512946 GTSCR1Q86UQ5 136 aa9.43□□□□□ -0.9
LIMCH1-217ENST00000512946 CMC4P56277 68 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-217ENST00000512946 SPATA31B1PQ5VZV4 182 aa9.43□□□□□ -0.9
LIMCH1-217ENST00000512946 SIVA1O15304 175 aa9.43□□□□□ -0.9
LIMCH1-217ENST00000512946 FOXL2P58012 376 aa9.43□□□□□ -0.9
LIMCH1-217ENST00000512946 MRAPQ8TCY5 172 aa9.43□□□□□ -0.9
LIMCH1-217ENST00000512946 C1orf43Q9BWL3 253 aa9.43□□□□□ -0.9
LIMCH1-217ENST00000512946 SNHG12Q9BXW3 62 aa9.43□□□□□ -0.9
LIMCH1-217ENST00000512946 IGHV3-72A0A0B4J1Y9 119 aa9.42□□□□□ -0.9
LIMCH1-217ENST00000512946 AGFG2O95081 481 aa9.42□□□□□ -0.9
LIMCH1-217ENST00000512946 EVI2AP22794 236 aa9.42□□□□□ -0.9
LIMCH1-217ENST00000512946 SRSF3P84103 164 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-217ENST00000512946 CLEC2AQ6UVW9 174 aa9.42□□□□□ -0.9
LIMCH1-217ENST00000512946 DPM3Q9P2X0 92 aa9.42□□□□□ -0.9
LIMCH1-217ENST00000512946 C15orf61A6NNL5 157 aa9.42□□□□□ -0.9
LIMCH1-217ENST00000512946 MYF5P13349 255 aa9.42□□□□□ -0.9
LIMCH1-217ENST00000512946 SPINK14Q6IE38 97 aa9.42□□□□□ -0.9
LIMCH1-217ENST00000512946 C16orf47Q6ZP98 133 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-217ENST00000512946 LYPD1Q8N2G4 141 aa9.42□□□□□ -0.9
LIMCH1-217ENST00000512946 C12orf77C9JDV5 145 aa9.42□□□□□ -0.9
LIMCH1-217ENST00000512946 EFNB3Q15768 340 aa9.42□□□□□ -0.9
LIMCH1-217ENST00000512946 ZXDCQ2QGD7 858 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-217ENST00000512946 ZC2HC1BQ5TFG8 222 aa9.42□□□□□ -0.9
LIMCH1-217ENST00000512946 SCARF2Q96GP6 870 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-217ENST00000512946 FMN2Q9NZ56 1722 aa9.42□□□□□ -0.9
LIMCH1-217ENST00000512946 ZNF142P52746 1687 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-217ENST00000512946 YPEL1O60688 119 aa9.42□□□□□ -0.9
LIMCH1-217ENST00000512946 IGHG4P01861 327 aa9.42□□□□□ -0.9
LIMCH1-217ENST00000512946 TEX43Q6ZNM6 134 aa9.42□□□□□ -0.9
LIMCH1-217ENST00000512946 YPEL2Q96QA6 119 aa9.42□□□□□ -0.9
LIMCH1-217ENST00000512946 FBXL7Q9UJT9 491 aa9.42□□□□□ -0.9
LIMCH1-217ENST00000512946 KNTC1P50748 2209 aa9.42□□□□□ -0.9
LIMCH1-217ENST00000512946 MYH14Q7Z406 1995 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-217ENST00000512946 PAX4O43316 350 aa9.41□□□□□ -0.9
LIMCH1-217ENST00000512946 FOXS1O43638 330 aa9.41□□□□□ -0.9
LIMCH1-217ENST00000512946 FOXH1O75593 365 aa9.41□□□□□ -0.9
LIMCH1-217ENST00000512946 IGKV1D-16P01601 117 aa9.41□□□□□ -0.9
LIMCH1-217ENST00000512946 C1QTNF4Q9BXJ3 329 aa9.41□□□□□ -0.9
LIMCH1-217ENST00000512946 TRAV8-3A0A0A6YYJ7 113 aa9.41□□□□□ -0.9
LIMCH1-217ENST00000512946 ADARB2-AS1A8MUL3 147 aa9.41□□□□□ -0.9
LIMCH1-217ENST00000512946 H0YIZ8 118 aa9.41□□□□□ -0.9
LIMCH1-217ENST00000512946 KLK10O43240 276 aa9.41□□□□□ -0.9
LIMCH1-217ENST00000512946 REG1AP05451 166 aa9.41□□□□□ -0.9
LIMCH1-217ENST00000512946 CCL8P80075 99 aa9.41□□□□□ -0.9
LIMCH1-217ENST00000512946 OR13A1Q8NGR1 328 aa9.41□□□□□ -0.9
LIMCH1-217ENST00000512946 PILRAQ9UKJ1 303 aa9.41□□□□□ -0.9
LIMCH1-217ENST00000512946 ANAPC10Q9UM13 185 aa9.41□□□□□ -0.9
LIMCH1-217ENST00000512946 J3KT08 172 aa9.41□□□□□ -0.9
LIMCH1-217ENST00000512946 DRD3P35462 400 aa9.41□□□□□ -0.9
LIMCH1-217ENST00000512946 RPL32P62910 135 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-217ENST00000512946 SCN9AQ15858 1988 aa9.4□□□□□ -0.9
LIMCH1-217ENST00000512946 IGKV1D-42A0A075B6H8 117 aa9.4□□□□□ -0.9
LIMCH1-217ENST00000512946 FAM89BQ8N5H3 189 aa9.4□□□□□ -0.9
LIMCH1-217ENST00000512946 C8orf46Q8TAG6 207 aa9.4□□□□□ -0.9
LIMCH1-217ENST00000512946 KLF14Q8TD94 323 aaPredicted RBP9.4□□□□□ -0.9
LIMCH1-217ENST00000512946 IGLC2P0DOY2 106 aa9.4□□□□□ -0.9
LIMCH1-217ENST00000512946 IGLC3P0DOY3 106 aa9.4□□□□□ -0.9
LIMCH1-217ENST00000512946 SPEM2Q0P670 501 aa9.4□□□□□ -0.9
LIMCH1-217ENST00000512946 PMS2CLQ68D20 193 aa9.4□□□□□ -0.9
LIMCH1-217ENST00000512946 OR11H6Q8NGC7 330 aa9.4□□□□□ -0.9
LIMCH1-217ENST00000512946 RNF125Q96EQ8 232 aa9.4□□□□□ -0.9
LIMCH1-217ENST00000512946 C17orf98A8MV24 154 aa9.4□□□□□ -0.9
LIMCH1-217ENST00000512946 TRGV3P03979 118 aa9.4□□□□□ -0.9
LIMCH1-217ENST00000512946 PRCDQ00LT1 54 aa9.4□□□□□ -0.9
LIMCH1-217ENST00000512946 LILRA6Q6PI73 481 aa9.4□□□□□ -0.9
LIMCH1-217ENST00000512946 TTTY12Q9BZ98 90 aa9.4□□□□□ -0.9
LIMCH1-217ENST00000512946 FNDC10F2Z333 226 aa9.4□□□□□ -0.91
LIMCH1-217ENST00000512946 RAMP3O60896 148 aa9.4□□□□□ -0.91
LIMCH1-217ENST00000512946 RBM3P98179 157 aaKnown RBP9.4□□□□□ -0.91
LIMCH1-217ENST00000512946 TMEM256Q8N2U0 113 aa9.4□□□□□ -0.91
LIMCH1-217ENST00000512946 LY6G5BQ8NDX9 201 aa9.4□□□□□ -0.91
LIMCH1-217ENST00000512946 hDV102S1A0JD36 115 aa9.39□□□□□ -0.91
LIMCH1-217ENST00000512946 SHISA3A0PJX4 238 aa9.39□□□□□ -0.91
LIMCH1-217ENST00000512946 DPH3P1Q9H4G8 78 aa9.39□□□□□ -0.91
LIMCH1-217ENST00000512946 FOXA2Q9Y261 457 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-217ENST00000512946 ACP7Q6ZNF0 438 aa9.39□□□□□ -0.91
LIMCH1-217ENST00000512946 CYTL1Q9NRR1 136 aa9.39□□□□□ -0.91
LIMCH1-217ENST00000512946 CRIM1Q9NZV1 1036 aa9.39□□□□□ -0.91
LIMCH1-217ENST00000512946 POLR3KQ9Y2Y1 108 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-217ENST00000512946 ANKRD29Q8N6D5 301 aa9.39□□□□□ -0.91
LIMCH1-217ENST00000512946 PEMTQ9UBM1 199 aa9.39□□□□□ -0.91
LIMCH1-217ENST00000512946 NUP205Q92621 2012 aa9.39□□□□□ -0.91
LIMCH1-217ENST00000512946 CD7P09564 240 aa9.39□□□□□ -0.91
LIMCH1-217ENST00000512946 LYL1P12980 280 aa9.39□□□□□ -0.91
LIMCH1-217ENST00000512946 AZU1P20160 251 aa9.39□□□□□ -0.91
LIMCH1-217ENST00000512946 LINC00312Q9Y6C7 94 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms