RNA–Protein interactions for RNA: ENST00000507247.5

RNF4-208, Transcript of ring finger protein 4, humanhuman

TSL 1 (best)

Gene RNF4, Length 616 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-208ENST00000507247 FXYD6-FXYD2A0A087WZ82 144 aa11.05□□□□□ -0.64
RNF4-208ENST00000507247 TMEM89A2RUT3 159 aa11.05□□□□□ -0.64
RNF4-208ENST00000507247 PRSS46E5RG02 174 aa11.05□□□□□ -0.64
RNF4-208ENST00000507247 H3BUA1 57 aa11.05□□□□□ -0.64
RNF4-208ENST00000507247 HAX1O00165 279 aa11.05□□□□□ -0.64
RNF4-208ENST00000507247 OR2J3O76001 311 aa11.05□□□□□ -0.64
RNF4-208ENST00000507247 NDUFB8O95169 186 aa11.05□□□□□ -0.64
RNF4-208ENST00000507247 BRI3O95415 125 aa11.05□□□□□ -0.64
RNF4-208ENST00000507247 OR8U8P0C7N1 319 aa11.05□□□□□ -0.64
RNF4-208ENST00000507247 METTL15P1P0C7V9 234 aa11.05□□□□□ -0.64
RNF4-208ENST00000507247 PF4V1P10720 104 aa11.05□□□□□ -0.64
RNF4-208ENST00000507247 SUB1P53999 127 aaKnown RBP eCLIP11.05□□□□□ -0.64
RNF4-208ENST00000507247 RPP30P78346 268 aaKnown RBP11.05□□□□□ -0.64
RNF4-208ENST00000507247 TMEM252Q8N6L7 170 aa11.05□□□□□ -0.64
RNF4-208ENST00000507247 OR5AU1Q8NGC0 362 aa11.05□□□□□ -0.64
RNF4-208ENST00000507247 MISP3Q96FF7 219 aa11.05□□□□□ -0.64
RNF4-208ENST00000507247 IGHV3-21A0A0B4J1V1 117 aa11.04□□□□□ -0.64
RNF4-208ENST00000507247 TRGV3P03979 118 aa11.04□□□□□ -0.64
RNF4-208ENST00000507247 ELANEP08246 267 aa11.04□□□□□ -0.64
RNF4-208ENST00000507247 HIST1H1BP16401 226 aaKnown RBP11.04□□□□□ -0.64
RNF4-208ENST00000507247 RAB9AP51151 201 aa11.04□□□□□ -0.64
RNF4-208ENST00000507247 ATP5IP56385 69 aaPredicted RBP11.04□□□□□ -0.64
RNF4-208ENST00000507247 TPPP2P59282 170 aa11.04□□□□□ -0.64
RNF4-208ENST00000507247 KRTAP10-3P60369 221 aa11.04□□□□□ -0.64
RNF4-208ENST00000507247 RAB11AP62491 216 aa11.04□□□□□ -0.64
RNF4-208ENST00000507247 RHOGP84095 191 aa11.04□□□□□ -0.64
RNF4-208ENST00000507247 ARL16Q0P5N6 197 aa11.04□□□□□ -0.64
RNF4-208ENST00000507247 FOXE3Q13461 319 aa11.04□□□□□ -0.64
RNF4-208ENST00000507247 MLANAQ16655 118 aa11.04□□□□□ -0.64
RNF4-208ENST00000507247 TCTEX1D4Q5JR98 221 aa11.04□□□□□ -0.64
RNF4-208ENST00000507247 HIST2H2BDQ6DRA6 164 aa11.04□□□□□ -0.64
RNF4-208ENST00000507247 TEX38Q6PEX7 206 aa11.04□□□□□ -0.64
RNF4-208ENST00000507247 ETV3LQ6ZN32 361 aa11.04□□□□□ -0.64
RNF4-208ENST00000507247 OR1L6Q8NGR2 347 aa11.04□□□□□ -0.64
RNF4-208ENST00000507247 BSCL2Q96G97 398 aaPredicted RBP11.04□□□□□ -0.64
RNF4-208ENST00000507247 FNDC4Q9H6D8 234 aaPredicted RBP11.04□□□□□ -0.64
RNF4-208ENST00000507247 A0A1B0GUS0 222 aa11.03□□□□□ -0.64
RNF4-208ENST00000507247 I3L2K1 104 aa11.03□□□□□ -0.64
RNF4-208ENST00000507247 K7EIM0 57 aa11.03□□□□□ -0.64
RNF4-208ENST00000507247 CST7O76096 145 aa11.03□□□□□ -0.64
RNF4-208ENST00000507247 C1QBP02746 253 aa11.03□□□□□ -0.64
RNF4-208ENST00000507247 IFNA4P05014 189 aa11.03□□□□□ -0.64
RNF4-208ENST00000507247 RPLP1P05386 114 aaKnown RBP11.03□□□□□ -0.64
RNF4-208ENST00000507247 EWSR1Q01844 656 aaKnown RBP eCLIP11.03□□□□□ -0.646e-6■□□□□ 9.2
RNF4-208ENST00000507247 NHLH2Q02577 135 aa11.03□□□□□ -0.64
RNF4-208ENST00000507247 FOXL1Q12952 345 aa11.03□□□□□ -0.64
RNF4-208ENST00000507247 KIAA0141Q14154 515 aaPredicted RBP11.03□□□□□ -0.64
RNF4-208ENST00000507247 AWAT1Q58HT5 328 aa11.03□□□□□ -0.64
RNF4-208ENST00000507247 OR8G2PQ6IF36 304 aa11.03□□□□□ -0.64
RNF4-208ENST00000507247 NOXA1Q86UR1 476 aa11.03□□□□□ -0.64
RNF4-208ENST00000507247 COMMD1Q8N668 190 aa11.03□□□□□ -0.64
RNF4-208ENST00000507247 RNF152Q8N8N0 203 aa11.03□□□□□ -0.64
RNF4-208ENST00000507247 MYOZ3Q8TDC0 251 aa11.03□□□□□ -0.64
RNF4-208ENST00000507247 RNASEH2CQ8TDP1 164 aaKnown RBP11.03□□□□□ -0.64
RNF4-208ENST00000507247 PINX1Q96BK5 328 aaKnown RBP11.03□□□□□ -0.64
RNF4-208ENST00000507247 C19orf24Q9BVV8 132 aa11.03□□□□□ -0.64
RNF4-208ENST00000507247 SLA2Q9H6Q3 261 aa11.03□□□□□ -0.64
RNF4-208ENST00000507247 FBXL7Q9UJT9 491 aa11.03□□□□□ -0.64
RNF4-208ENST00000507247 TNFSF18Q9UNG2 199 aa11.03□□□□□ -0.64
RNF4-208ENST00000507247 S4R3C0 116 aa11.03□□□□□ -0.64
RNF4-208ENST00000507247 RNF222A6NCQ9 220 aa11.02□□□□□ -0.65
RNF4-208ENST00000507247 MFSD2BA6NFX1 497 aa11.02□□□□□ -0.65
RNF4-208ENST00000507247 CORTO00230 105 aa11.02□□□□□ -0.65
RNF4-208ENST00000507247 PFDN1O60925 122 aa11.02□□□□□ -0.65
RNF4-208ENST00000507247 MT-CO2P00403 227 aa11.02□□□□□ -0.65
RNF4-208ENST00000507247 IGHV3-48P01763 117 aa11.02□□□□□ -0.65
RNF4-208ENST00000507247 CD28P10747 220 aa11.02□□□□□ -0.65
RNF4-208ENST00000507247 RPL12P30050 165 aaKnown RBP11.02□□□□□ -0.65
RNF4-208ENST00000507247 OPRK1P41145 380 aa11.02□□□□□ -0.65
RNF4-208ENST00000507247 SULT1A1P50225 295 aa11.02□□□□□ -0.65
RNF4-208ENST00000507247 TMEM65Q6PI78 240 aa11.02□□□□□ -0.65
RNF4-208ENST00000507247 ZNF546Q86UE3 836 aa11.02□□□□□ -0.65
RNF4-208ENST00000507247 NECAP1Q8NC96 275 aa11.02□□□□□ -0.65
RNF4-208ENST00000507247 OR4X2Q8NGF9 303 aa11.02□□□□□ -0.65
RNF4-208ENST00000507247 SPATA3Q8NHX4 192 aa11.02□□□□□ -0.65
RNF4-208ENST00000507247 SLC25A31Q9H0C2 315 aa11.02□□□□□ -0.65
RNF4-208ENST00000507247 MRPL36Q9P0J6 103 aaKnown RBP11.02□□□□□ -0.65
RNF4-208ENST00000507247 HSPB11Q9Y547 144 aa11.02□□□□□ -0.65
RNF4-208ENST00000507247 COL6A5A8TX70 2615 aa11.01□□□□□ -0.65
RNF4-208ENST00000507247 FAM223BA6NKX1 122 aa11.01□□□□□ -0.65
RNF4-208ENST00000507247 ARPC5O15511 151 aa11.01□□□□□ -0.65
RNF4-208ENST00000507247 CYB5BO43169 146 aa11.01□□□□□ -0.65
RNF4-208ENST00000507247 CD69Q07108 199 aa11.01□□□□□ -0.65
RNF4-208ENST00000507247 EXOSC2Q13868 293 aaKnown RBP11.01□□□□□ -0.65
RNF4-208ENST00000507247 C15orf32Q32M92 178 aa11.01□□□□□ -0.65
RNF4-208ENST00000507247 STX12Q86Y82 276 aa11.01□□□□□ -0.65
RNF4-208ENST00000507247 FAM223AQ8IWN6 122 aa11.01□□□□□ -0.65
RNF4-208ENST00000507247 TMEM217Q8N7C4 229 aa11.01□□□□□ -0.65
RNF4-208ENST00000507247 ZNF491Q8N8L2 437 aa11.01□□□□□ -0.65
RNF4-208ENST00000507247 C11orf44Q8N8P7 122 aa11.01□□□□□ -0.65
RNF4-208ENST00000507247 SCARB1Q8WTV0 552 aa11.01□□□□□ -0.65
RNF4-208ENST00000507247 WFDC12Q8WWY7 111 aa11.01□□□□□ -0.65
RNF4-208ENST00000507247 AQP10Q96PS8 301 aa11.01□□□□□ -0.65
RNF4-208ENST00000507247 THYN1Q9P016 225 aa11.01□□□□□ -0.65
RNF4-208ENST00000507247 ATRQ13535 2644 aa11□□□□□ -0.65
RNF4-208ENST00000507247 HMSDA8MTL9 139 aa11□□□□□ -0.65
RNF4-208ENST00000507247 IGHV3-11P01762 117 aa11□□□□□ -0.65
RNF4-208ENST00000507247 IGHV3-23P01764 117 aa11□□□□□ -0.65
RNF4-208ENST00000507247 ATP5G2Q06055 141 aa11□□□□□ -0.65
RNF4-208ENST00000507247 SLC38A11Q08AI6 406 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms