RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 GABRA2P47869 451 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 RAB13P51153 203 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 HTR4Q13639 388 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 POU6F1Q14863 301 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 ZNF141Q15928 474 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 IAH1Q2TAA2 248 aaPredicted RBP2.68□□□□□ -1.98
VPS13A-212ENST00000493341 FAM229BQ4G0N7 80 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 Q6ZS49 121 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 GDPD1Q8N9F7 314 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 C1orf64Q8NEQ6 169 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 ABCG5Q9H222 651 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 PAQR5Q9NXK6 330 aaPredicted RBP2.68□□□□□ -1.98
VPS13A-212ENST00000493341 LRRC37AA6NMS7 1700 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 IBTKQ9P2D0 1353 aaPredicted RBP2.68□□□□□ -1.98
VPS13A-212ENST00000493341 A0A1W2PQ67 120 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 DHRS12A0PJE2 317 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 VPS37CA5D8V6 355 aaPredicted RBP2.68□□□□□ -1.98
VPS13A-212ENST00000493341 PIRO00625 290 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 KLRC4O43908 158 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 DSCAMO60469 2012 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 LPAR6P43657 344 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 RPL27AP46776 148 aaKnown RBP2.68□□□□□ -1.98
VPS13A-212ENST00000493341 POLR2GP62487 172 aaKnown RBP eCLIP2.68□□□□□ -1.98
VPS13A-212ENST00000493341 FKBP1AP62942 108 aaKnown RBP2.68□□□□□ -1.98
VPS13A-212ENST00000493341 LGALS9BQ3B8N2 356 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 TEX36Q5VZQ5 186 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 LGALS9CQ6DKI2 356 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 SMARCD3Q6STE5 483 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 ZNF322Q6U7Q0 402 aaPredicted RBP2.68□□□□□ -1.98
VPS13A-212ENST00000493341 TMPPEQ6ZT21 453 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 LYPD6Q86Y78 171 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 DDX60Q8IY21 1712 aaKnown RBP2.68□□□□□ -1.98
VPS13A-212ENST00000493341 CT55Q8WUE5 264 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 ACOT12Q8WYK0 555 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 WDR90Q96KV7 1748 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 TSPAN32Q96QS1 320 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 TTTY13Q9BZ97 58 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 C16orf95Q9H693 158 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 CISHQ9NSE2 258 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 R4GN34 69 aa2.68□□□□□ -1.98
VPS13A-212ENST00000493341 SLX4Q8IY92 1834 aa2.67□□□□□ -1.98
VPS13A-212ENST00000493341 C2orf74A8MZ97 194 aa2.67□□□□□ -1.98
VPS13A-212ENST00000493341 I3L521 148 aa2.67□□□□□ -1.98
VPS13A-212ENST00000493341 CYBAP13498 195 aa2.67□□□□□ -1.98
VPS13A-212ENST00000493341 ZNF22P17026 224 aaPredicted RBP2.67□□□□□ -1.98
VPS13A-212ENST00000493341 S100A7P31151 101 aa2.67□□□□□ -1.98
VPS13A-212ENST00000493341 DEFA3P59666 94 aa2.67□□□□□ -1.98
VPS13A-212ENST00000493341 KRTAP10-7P60409 375 aaPredicted RBP2.67□□□□□ -1.98
VPS13A-212ENST00000493341 RPL30P62888 115 aaKnown RBP2.67□□□□□ -1.98
VPS13A-212ENST00000493341 CST6Q15828 149 aa2.67□□□□□ -1.98
VPS13A-212ENST00000493341 SSX8Q7RTT4 187 aa2.67□□□□□ -1.98
VPS13A-212ENST00000493341 MSRB3Q8IXL7 192 aa2.67□□□□□ -1.98
VPS13A-212ENST00000493341 Q8NAQ8 132 aa2.67□□□□□ -1.98
VPS13A-212ENST00000493341 MRPL30Q8TCC3 161 aaKnown RBP2.67□□□□□ -1.98
VPS13A-212ENST00000493341 WDR61Q9GZS3 305 aaKnown RBP2.67□□□□□ -1.98
VPS13A-212ENST00000493341 UTP11Q9Y3A2 253 aaKnown RBP2.67□□□□□ -1.98
VPS13A-212ENST00000493341 PSME4Q14997 1843 aa2.67□□□□□ -1.98
VPS13A-212ENST00000493341 MYH3P11055 1940 aa2.66□□□□□ -1.98
VPS13A-212ENST00000493341 A0A087WUU8 490 aa2.66□□□□□ -1.98
VPS13A-212ENST00000493341 IGHV3-73A0A0B4J1V6 119 aa2.66□□□□□ -1.98
VPS13A-212ENST00000493341 EXOC1LA0A1B0GW35 172 aa2.66□□□□□ -1.98
VPS13A-212ENST00000493341 IFNA1P01562 189 aa2.66□□□□□ -1.98
VPS13A-212ENST00000493341 TAS2R41P59536 307 aa2.66□□□□□ -1.98
VPS13A-212ENST00000493341 EIF4EBP2Q13542 120 aaPredicted RBP2.66□□□□□ -1.98
VPS13A-212ENST00000493341 LY6EQ16553 131 aa2.66□□□□□ -1.98
VPS13A-212ENST00000493341 AMMECR1LQ6DCA0 310 aa2.66□□□□□ -1.98
VPS13A-212ENST00000493341 CNEP1R1Q8N9A8 125 aa2.66□□□□□ -1.98
VPS13A-212ENST00000493341 MUC7Q8TAX7 377 aa2.66□□□□□ -1.98
VPS13A-212ENST00000493341 KLF6Q99612 283 aaPredicted RBP2.66□□□□□ -1.98
VPS13A-212ENST00000493341 RSPO3Q9BXY4 272 aaPredicted RBP2.66□□□□□ -1.98
VPS13A-212ENST00000493341 C11orf68Q9H3H3 251 aaKnown RBP2.66□□□□□ -1.98
VPS13A-212ENST00000493341 SMDT1Q9H4I9 107 aa2.66□□□□□ -1.98
VPS13A-212ENST00000493341 FBXL12Q9NXK8 326 aa2.66□□□□□ -1.98
VPS13A-212ENST00000493341 KLK5Q9Y337 293 aaPredicted RBP2.66□□□□□ -1.98
VPS13A-212ENST00000493341 TMEM56-RWDD3S4R434 201 aa2.66□□□□□ -1.98
VPS13A-212ENST00000493341 PRR14LQ5THK1 2151 aa2.66□□□□□ -1.98
VPS13A-212ENST00000493341 HMGB3O15347 200 aaKnown RBP2.66□□□□□ -1.98
VPS13A-212ENST00000493341 ATG12O94817 140 aa2.66□□□□□ -1.98
VPS13A-212ENST00000493341 SERPINE1P05121 402 aa2.66□□□□□ -1.98
VPS13A-212ENST00000493341 CD200P41217 278 aa2.66□□□□□ -1.98
VPS13A-212ENST00000493341 CRYBA4P53673 196 aa2.66□□□□□ -1.98
VPS13A-212ENST00000493341 TAS2R30P59541 319 aa2.66□□□□□ -1.98
VPS13A-212ENST00000493341 SMIM5Q71RC9 77 aa2.66□□□□□ -1.98
VPS13A-212ENST00000493341 ZNF283Q8N7M2 679 aa2.66□□□□□ -1.98
VPS13A-212ENST00000493341 OR10P1Q8NGE3 313 aa2.66□□□□□ -1.98
VPS13A-212ENST00000493341 IGF2BP2-AS1Q96M15 143 aa2.66□□□□□ -1.98
VPS13A-212ENST00000493341 CCDC90BQ9GZT6 254 aa2.66□□□□□ -1.98
VPS13A-212ENST00000493341 TMEM222Q9H0R3 208 aa2.66□□□□□ -1.98
VPS13A-212ENST00000493341 SRCAPQ6ZRS2 3230 aa2.65□□□□□ -1.98
VPS13A-212ENST00000493341 GPR179Q6PRD1 2367 aa2.65□□□□□ -1.98
VPS13A-212ENST00000493341 hCG_1818297A0A087WSY0 165 aa2.65□□□□□ -1.99
VPS13A-212ENST00000493341 A0A1B0GU33 70 aa2.65□□□□□ -1.99
VPS13A-212ENST00000493341 GRIFINA4D1Z8 144 aa2.65□□□□□ -1.99
VPS13A-212ENST00000493341 C17orf51A8MQB3 221 aa2.65□□□□□ -1.99
VPS13A-212ENST00000493341 A8MT66 165 aa2.65□□□□□ -1.99
VPS13A-212ENST00000493341 C17orf98A8MV24 154 aa2.65□□□□□ -1.99
VPS13A-212ENST00000493341 UBFD1O14562 309 aaKnown RBP2.65□□□□□ -1.99
VPS13A-212ENST00000493341 TP53I11O14683 189 aa2.65□□□□□ -1.99
VPS13A-212ENST00000493341 SYNGR2O43760 224 aa2.65□□□□□ -1.99
VPS13A-212ENST00000493341 S1PR2O95136 353 aa2.65□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms