RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 CELSR1Q9NYQ6 3014 aa17.09■□□□□ 0.33
SMC4-221ENST00000489573 CORTO00230 105 aa17.09■□□□□ 0.33
SMC4-221ENST00000489573 ATP6V0E1O15342 81 aa17.09■□□□□ 0.33
SMC4-221ENST00000489573 CRYGCP07315 174 aa17.09■□□□□ 0.33
SMC4-221ENST00000489573 HNF1AP20823 631 aa17.09■□□□□ 0.33
SMC4-221ENST00000489573 MDKP21741 143 aaPredicted RBP17.09■□□□□ 0.33
SMC4-221ENST00000489573 GPX4P36969 197 aaPredicted RBP17.09■□□□□ 0.33
SMC4-221ENST00000489573 SLC16A13Q7RTY0 426 aa17.09■□□□□ 0.33
SMC4-221ENST00000489573 CACNG8Q8WXS5 425 aa17.09■□□□□ 0.33
SMC4-221ENST00000489573 MISP3Q96FF7 219 aa17.09■□□□□ 0.33
SMC4-221ENST00000489573 WNT10AQ9GZT5 417 aa17.09■□□□□ 0.33
SMC4-221ENST00000489573 RPS10-NUDT3A0A1W2PQS6 291 aa17.08■□□□□ 0.32
SMC4-221ENST00000489573 OPRK1P41145 380 aa17.08■□□□□ 0.32
SMC4-221ENST00000489573 AKR1C1Q04828 323 aa17.08■□□□□ 0.32
SMC4-221ENST00000489573 CLLU1Q5K131 121 aa17.08■□□□□ 0.32
SMC4-221ENST00000489573 BTNL8Q6UX41 500 aa17.08■□□□□ 0.32
SMC4-221ENST00000489573 TREML4Q6UXN2 200 aa17.08■□□□□ 0.32
SMC4-221ENST00000489573 TTC9CQ8N5M4 171 aa17.08■□□□□ 0.32
SMC4-221ENST00000489573 LFNGQ8NES3 379 aa17.08■□□□□ 0.32
SMC4-221ENST00000489573 OR1L6Q8NGR2 347 aa17.08■□□□□ 0.32
SMC4-221ENST00000489573 OR2G3Q8NGZ4 309 aa17.08■□□□□ 0.32
SMC4-221ENST00000489573 PSMG3Q9BT73 122 aaPredicted RBP17.08■□□□□ 0.32
SMC4-221ENST00000489573 RSG1Q9BU20 258 aa17.08■□□□□ 0.32
SMC4-221ENST00000489573 NPVFQ9HCQ7 196 aa17.08■□□□□ 0.32
SMC4-221ENST00000489573 VPREB3Q9UKI3 123 aa17.08■□□□□ 0.32
SMC4-221ENST00000489573 DEFA4P12838 97 aa17.07■□□□□ 0.32
SMC4-221ENST00000489573 RNF141Q8WVD5 230 aa17.07■□□□□ 0.32
SMC4-221ENST00000489573 PCNPQ8WW12 178 aaKnown RBP17.07■□□□□ 0.32
SMC4-221ENST00000489573 SLC35E1Q96K37 410 aa17.07■□□□□ 0.32
SMC4-221ENST00000489573 PLA2G2EQ9NZK7 142 aa17.07■□□□□ 0.32
SMC4-221ENST00000489573 TIMM9Q9Y5J7 89 aa17.07■□□□□ 0.32
SMC4-221ENST00000489573 DMRT1Q9Y5R6 373 aa17.07■□□□□ 0.32
SMC4-221ENST00000489573 RFNGQ9Y644 331 aa17.07■□□□□ 0.32
SMC4-221ENST00000489573 MPDU1O75352 247 aa17.06■□□□□ 0.32
SMC4-221ENST00000489573 SULT1A2P50226 295 aa17.06■□□□□ 0.32
SMC4-221ENST00000489573 ETFRF1Q6IPR1 90 aa17.06■□□□□ 0.32
SMC4-221ENST00000489573 TMEM182Q6ZP80 229 aaPredicted RBP17.06■□□□□ 0.32
SMC4-221ENST00000489573 LRRC20Q8TCA0 184 aa17.06■□□□□ 0.32
SMC4-221ENST00000489573 NPCDR1Q9BY65 106 aa17.06■□□□□ 0.32
SMC4-221ENST00000489573 FNDC4Q9H6D8 234 aaPredicted RBP17.06■□□□□ 0.32
SMC4-221ENST00000489573 TMEM160Q9NX00 188 aa17.06■□□□□ 0.32
SMC4-221ENST00000489573 ZANQ9Y493 2812 aa17.06■□□□□ 0.32
SMC4-221ENST00000489573 NAV3Q8IVL0 2385 aa17.06■□□□□ 0.32
SMC4-221ENST00000489573 FLNAP21333 2647 aaKnown RBP17.06■□□□□ 0.32
SMC4-221ENST00000489573 TSPAN9O75954 239 aa17.06■□□□□ 0.32
SMC4-221ENST00000489573 NMBP08949 121 aa17.06■□□□□ 0.32
SMC4-221ENST00000489573 FAM157CP0CG43 387 aa17.06■□□□□ 0.32
SMC4-221ENST00000489573 GAMTQ14353 236 aa17.06■□□□□ 0.32
SMC4-221ENST00000489573 MLANAQ16655 118 aa17.06■□□□□ 0.32
SMC4-221ENST00000489573 ECSCRQ19T08 205 aa17.06■□□□□ 0.32
SMC4-221ENST00000489573 C9orf152Q5JTZ5 239 aa17.06■□□□□ 0.32
SMC4-221ENST00000489573 UNQ5815/PRO19632Q6UWF5 114 aa17.06■□□□□ 0.32
SMC4-221ENST00000489573 TMEM68Q96MH6 324 aa17.06■□□□□ 0.32
SMC4-221ENST00000489573 TNFRSF19Q9NS68 423 aa17.06■□□□□ 0.32
SMC4-221ENST00000489573 LINC01548A6NM66 108 aa17.05■□□□□ 0.32
SMC4-221ENST00000489573 HOXA3O43365 443 aaPredicted RBP17.05■□□□□ 0.32
SMC4-221ENST00000489573 TMEM144Q7Z5S9 345 aa17.05■□□□□ 0.32
SMC4-221ENST00000489573 SIGLECL1Q8N7X8 197 aa17.05■□□□□ 0.32
SMC4-221ENST00000489573 LSM4Q9Y4Z0 139 aaKnown RBP17.05■□□□□ 0.32
SMC4-221ENST00000489573 C17orf112F2Z3M2 114 aa17.04■□□□□ 0.32
SMC4-221ENST00000489573 CRIP2P52943 208 aaPredicted RBP17.04■□□□□ 0.32
SMC4-221ENST00000489573 TEPPQ6URK8 271 aa17.04■□□□□ 0.32
SMC4-221ENST00000489573 CENPVQ7Z7K6 275 aaPredicted RBP17.04■□□□□ 0.32
SMC4-221ENST00000489573 ZNF709Q8N972 641 aa17.04■□□□□ 0.32
SMC4-221ENST00000489573 FAM110DQ8TAY7 271 aaPredicted RBP17.04■□□□□ 0.32
SMC4-221ENST00000489573 TMUB1Q9BVT8 246 aa17.04■□□□□ 0.32
SMC4-221ENST00000489573 SVEP1Q4LDE5 3571 aa17.03■□□□□ 0.32
SMC4-221ENST00000489573 UMAD1C9J7I0 102 aa17.03■□□□□ 0.32
SMC4-221ENST00000489573 CYB5BO43169 146 aa17.03■□□□□ 0.32
SMC4-221ENST00000489573 IGHG2P01859 326 aa17.03■□□□□ 0.32
SMC4-221ENST00000489573 RAB5CP51148 216 aa17.03■□□□□ 0.32
SMC4-221ENST00000489573 SLC35E3Q7Z769 313 aa17.03■□□□□ 0.32
SMC4-221ENST00000489573 OR5T1Q8NG75 326 aa17.03■□□□□ 0.32
SMC4-221ENST00000489573 OR2T6Q8NHC8 308 aa17.03■□□□□ 0.32
SMC4-221ENST00000489573 MGST2Q99735 147 aa17.03■□□□□ 0.32
SMC4-221ENST00000489573 IGLV11-55A0A075B6I3 123 aa17.02■□□□□ 0.32
SMC4-221ENST00000489573 ZNF705EA8MWA4 302 aaPredicted RBP17.02■□□□□ 0.32
SMC4-221ENST00000489573 MT-CO2P00403 227 aa17.02■□□□□ 0.32
SMC4-221ENST00000489573 PRH1P02810 166 aa17.02■□□□□ 0.32
SMC4-221ENST00000489573 BLCAPP62952 87 aa17.02■□□□□ 0.32
SMC4-221ENST00000489573 SERF2P84101 59 aa17.02■□□□□ 0.32
SMC4-221ENST00000489573 AKIRIN2Q53H80 203 aa17.02■□□□□ 0.32
SMC4-221ENST00000489573 AKR1C8PQ5T2L2 129 aa17.02■□□□□ 0.32
SMC4-221ENST00000489573 ACY3Q96HD9 319 aa17.02■□□□□ 0.32
SMC4-221ENST00000489573 SMR3AQ99954 134 aa17.02■□□□□ 0.32
SMC4-221ENST00000489573 I3L2K1 104 aa17.02■□□□□ 0.31
SMC4-221ENST00000489573 RAB31Q13636 194 aa17.02■□□□□ 0.31
SMC4-221ENST00000489573 NDUFA5Q16718 116 aa17.02■□□□□ 0.31
SMC4-221ENST00000489573 TMEM86BQ8N661 226 aa17.02■□□□□ 0.31
SMC4-221ENST00000489573 GGTLC1Q9BX51 225 aa17.02■□□□□ 0.31
SMC4-221ENST00000489573 G3V318 75 aa17.01■□□□□ 0.31
SMC4-221ENST00000489573 TRIM77I1YAP6 450 aa17.01■□□□□ 0.31
SMC4-221ENST00000489573 LY6G6DO95868 133 aa17.01■□□□□ 0.31
SMC4-221ENST00000489573 IGHV3-48P01763 117 aa17.01■□□□□ 0.31
SMC4-221ENST00000489573 IGF1P05019 195 aa17.01■□□□□ 0.31
SMC4-221ENST00000489573 CAMLGP49069 296 aa17.01■□□□□ 0.31
SMC4-221ENST00000489573 SAT2Q96F10 170 aaPredicted RBP17.01■□□□□ 0.31
SMC4-221ENST00000489573 FANCD2OSQ96PS1 177 aa17.01■□□□□ 0.31
SMC4-221ENST00000489573 KCNIP2Q9NS61 270 aa17.01■□□□□ 0.31
SMC4-221ENST00000489573 ZNF469Q96JG9 3925 aaPredicted RBP17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms