RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 BSCL2Q96G97 398 aaPredicted RBP13.22□□□□□ -0.29
MDC1-206ENST00000489540 PRR25Q96S07 402 aa13.22□□□□□ -0.29
MDC1-206ENST00000489540 PRR13Q9NZ81 148 aa13.22□□□□□ -0.29
MDC1-206ENST00000489540 PTTG2Q9NZH5 202 aa13.22□□□□□ -0.29
MDC1-206ENST00000489540 PRKDCP78527 4128 aaKnown RBP13.21□□□□□ -0.29
MDC1-206ENST00000489540 IGHV3-21A0A0B4J1V1 117 aa13.21□□□□□ -0.3
MDC1-206ENST00000489540 SULT1A3P0DMM9 295 aa13.21□□□□□ -0.3
MDC1-206ENST00000489540 SULT1A4P0DMN0 295 aa13.21□□□□□ -0.3
MDC1-206ENST00000489540 UBE2MP61081 183 aaKnown RBP13.21□□□□□ -0.3
MDC1-206ENST00000489540 SPSB3Q6PJ21 355 aa13.21□□□□□ -0.3
MDC1-206ENST00000489540 LYZL2Q7Z4W2 148 aa13.21□□□□□ -0.3
MDC1-206ENST00000489540 TXN2Q99757 166 aa13.21□□□□□ -0.3
MDC1-206ENST00000489540 DUXBA0A1W2PPF3 345 aa13.2□□□□□ -0.3
MDC1-206ENST00000489540 ZNF320A2RRD8 509 aa13.2□□□□□ -0.3
MDC1-206ENST00000489540 OR2T8A6NH00 312 aa13.2□□□□□ -0.3
MDC1-206ENST00000489540 I3L2K1 104 aa13.2□□□□□ -0.3
MDC1-206ENST00000489540 TGOLN2O43493 480 aa13.2□□□□□ -0.3
MDC1-206ENST00000489540 SFT2D2O95562 160 aa13.2□□□□□ -0.3
MDC1-206ENST00000489540 FCGR2BP31994 310 aaPredicted RBP13.2□□□□□ -0.3
MDC1-206ENST00000489540 MFAP4P55083 255 aa13.2□□□□□ -0.3
MDC1-206ENST00000489540 NMSQ5H8A3 153 aa13.2□□□□□ -0.3
MDC1-206ENST00000489540 PVRIGQ6DKI7 326 aa13.2□□□□□ -0.3
MDC1-206ENST00000489540 LRTM2Q8N967 370 aa13.2□□□□□ -0.3
MDC1-206ENST00000489540 S100ZQ8WXG8 99 aa13.2□□□□□ -0.3
MDC1-206ENST00000489540 CCDC32Q9BV29 185 aa13.2□□□□□ -0.3
MDC1-206ENST00000489540 ZC4H2Q9NQZ6 224 aa13.2□□□□□ -0.3
MDC1-206ENST00000489540 A0A1B0GU03 582 aa13.19□□□□□ -0.3
MDC1-206ENST00000489540 C2orf70A6NJV1 201 aa13.19□□□□□ -0.3
MDC1-206ENST00000489540 CORTO00230 105 aa13.19□□□□□ -0.3
MDC1-206ENST00000489540 MT-CO2P00403 227 aa13.19□□□□□ -0.3
MDC1-206ENST00000489540 GP9P14770 177 aa13.19□□□□□ -0.3
MDC1-206ENST00000489540 PPP1R1AQ13522 171 aa13.19□□□□□ -0.3
MDC1-206ENST00000489540 SMCO1Q147U7 214 aa13.19□□□□□ -0.3
MDC1-206ENST00000489540 Q56UQ5 140 aa13.19□□□□□ -0.3
MDC1-206ENST00000489540 OR2K2Q8NGT1 345 aa13.19□□□□□ -0.3
MDC1-206ENST00000489540 PALMDQ9NP74 551 aa13.19□□□□□ -0.3
MDC1-206ENST00000489540 LSM4Q9Y4Z0 139 aaKnown RBP13.19□□□□□ -0.3
MDC1-206ENST00000489540 CEBPZOSA8MTT3 80 aa13.18□□□□□ -0.3
MDC1-206ENST00000489540 RNASE2P10153 161 aaKnown RBP13.18□□□□□ -0.3
MDC1-206ENST00000489540 HTR2BP41595 481 aa13.18□□□□□ -0.3
MDC1-206ENST00000489540 ANKRD55Q3KP44 614 aa13.18□□□□□ -0.3
MDC1-206ENST00000489540 HAPLN4Q86UW8 402 aa13.18□□□□□ -0.3
MDC1-206ENST00000489540 UBAC2Q8NBM4 344 aa13.18□□□□□ -0.3
MDC1-206ENST00000489540 PINX1Q96BK5 328 aaKnown RBP13.18□□□□□ -0.3
MDC1-206ENST00000489540 ZNF436Q9C0F3 470 aaPredicted RBP13.18□□□□□ -0.3
MDC1-206ENST00000489540 HEYLQ9NQ87 328 aaPredicted RBP13.18□□□□□ -0.3
MDC1-206ENST00000489540 UFC1Q9Y3C8 167 aa13.18□□□□□ -0.3
MDC1-206ENST00000489540 A8MWP6 167 aa13.17□□□□□ -0.3
MDC1-206ENST00000489540 F8W735 103 aaPredicted RBP13.17□□□□□ -0.3
MDC1-206ENST00000489540 PLA2G10O15496 165 aa13.17□□□□□ -0.3
MDC1-206ENST00000489540 NUPL2O15504 423 aaKnown RBP13.17□□□□□ -0.3
MDC1-206ENST00000489540 FOLR2P14207 255 aa13.17□□□□□ -0.3
MDC1-206ENST00000489540 ELLP55199 621 aaPredicted RBP13.17□□□□□ -0.3
MDC1-206ENST00000489540 BSXQ3C1V8 233 aa13.17□□□□□ -0.3
MDC1-206ENST00000489540 LCN12Q6JVE5 192 aa13.17□□□□□ -0.3
MDC1-206ENST00000489540 HIPK2Q9H2X6 1198 aa13.17□□□□□ -0.3
MDC1-206ENST00000489540 TECRQ9NZ01 308 aaKnown RBP13.17□□□□□ -0.3
MDC1-206ENST00000489540 TMED3Q9Y3Q3 217 aa13.17□□□□□ -0.3
MDC1-206ENST00000489540 LYRM1O43325 122 aa13.16□□□□□ -0.3
MDC1-206ENST00000489540 CTSGP08311 255 aa13.16□□□□□ -0.3
MDC1-206ENST00000489540 SLC25A6P12236 298 aa13.16□□□□□ -0.3
MDC1-206ENST00000489540 CBLN1P23435 193 aa13.16□□□□□ -0.3
MDC1-206ENST00000489540 BTCP35070 178 aa13.16□□□□□ -0.3
MDC1-206ENST00000489540 NPBWR1P48145 328 aa13.16□□□□□ -0.3
MDC1-206ENST00000489540 ADAMTSL5Q6ZMM2 481 aa13.16□□□□□ -0.3
MDC1-206ENST00000489540 DUSP18Q8NEJ0 188 aa13.16□□□□□ -0.3
MDC1-206ENST00000489540 DYNLRB2Q8TF09 96 aa13.16□□□□□ -0.3
MDC1-206ENST00000489540 MARC2Q969Z3 335 aa13.16□□□□□ -0.3
MDC1-206ENST00000489540 CHRDL1Q9BU40 450 aa13.16□□□□□ -0.3
MDC1-206ENST00000489540 HSPB7Q9UBY9 170 aa13.16□□□□□ -0.3
MDC1-206ENST00000489540 FLVCR2Q9UPI3 526 aa13.16□□□□□ -0.3
MDC1-206ENST00000489540 IGHV3-35A0A0C4DH35 117 aa13.15□□□□□ -0.3
MDC1-206ENST00000489540 C9orf170A2RU37 121 aa13.15□□□□□ -0.3
MDC1-206ENST00000489540 NDUFA4O00483 81 aa13.15□□□□□ -0.3
MDC1-206ENST00000489540 ADMP35318 185 aa13.15□□□□□ -0.3
MDC1-206ENST00000489540 RELQ04864 619 aaPredicted RBP13.15□□□□□ -0.3
MDC1-206ENST00000489540 TNFRSF9Q07011 255 aa13.15□□□□□ -0.3
MDC1-206ENST00000489540 DEFB114Q30KQ6 69 aa13.15□□□□□ -0.3
MDC1-206ENST00000489540 UNQ9165/PRO28630Q6UXU0 137 aa13.15□□□□□ -0.3
MDC1-206ENST00000489540 NOXA1Q86UR1 476 aa13.15□□□□□ -0.3
MDC1-206ENST00000489540 OR1S1Q8NH92 325 aa13.15□□□□□ -0.3
MDC1-206ENST00000489540 SMAD5-AS1Q9Y6J3 95 aa13.15□□□□□ -0.3
MDC1-206ENST00000489540 TMEM213A2RRL7 107 aa13.14□□□□□ -0.31
MDC1-206ENST00000489540 GNG7O60262 68 aa13.14□□□□□ -0.31
MDC1-206ENST00000489540 OR4E1P0C645 316 aa13.14□□□□□ -0.31
MDC1-206ENST00000489540 CD300EQ496F6 205 aaPredicted RBP13.14□□□□□ -0.31
MDC1-206ENST00000489540 TM4SF20Q53R12 229 aa13.14□□□□□ -0.31
MDC1-206ENST00000489540 C2orf83Q53S99 150 aa13.14□□□□□ -0.31
MDC1-206ENST00000489540 TMEM190Q8WZ59 177 aa13.14□□□□□ -0.31
MDC1-206ENST00000489540 MRPL27Q9P0M9 148 aaKnown RBP13.14□□□□□ -0.31
MDC1-206ENST00000489540 U3KQ87 197 aa13.14□□□□□ -0.31
MDC1-206ENST00000489540 SORL1Q92673 2214 aa13.14□□□□□ -0.31
MDC1-206ENST00000489540 RPS10-NUDT3A0A1W2PQS6 291 aa13.13□□□□□ -0.31
MDC1-206ENST00000489540 PITX3O75364 302 aa13.13□□□□□ -0.31
MDC1-206ENST00000489540 IGHV3-48P01763 117 aa13.13□□□□□ -0.31
MDC1-206ENST00000489540 C8orf88P0DMB2 117 aa13.13□□□□□ -0.31
MDC1-206ENST00000489540 C4orf46Q504U0 113 aa13.13□□□□□ -0.31
MDC1-206ENST00000489540 UXS1Q8NBZ7 420 aa13.13□□□□□ -0.31
MDC1-206ENST00000489540 SLC24A4Q8NFF2 622 aa13.13□□□□□ -0.31
MDC1-206ENST00000489540 COQ8AQ8NI60 647 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms