RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 METTL15P1P0C7V9 234 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 FAM236CP0DP71 79 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 HIST1H1TP22492 207 aaPredicted RBP0.71□□□□□ -2.3
PTPN4-212ENST00000488896 HIST1H2BOP23527 126 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 S100A4P26447 101 aaKnown RBP0.71□□□□□ -2.3
PTPN4-212ENST00000488896 HIST1H2BBP33778 126 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 RPL5P46777 297 aaKnown RBP0.71□□□□□ -2.3
PTPN4-212ENST00000488896 HIST1H2BDP58876 126 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 AP3S2P59780 193 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 RAB5BP61020 215 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 SNRPD2P62316 118 aaKnown RBP0.71□□□□□ -2.3
PTPN4-212ENST00000488896 RHOBP62745 196 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 HIST1H2BCP62807 126 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 CCL20P78556 96 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 MRPS25P82663 173 aaKnown RBP0.71□□□□□ -2.3
PTPN4-212ENST00000488896 STX5Q13190 355 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 OR2F1Q13607 317 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 CDK10Q15131 360 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 ELOBQ15370 118 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 HIST2H2BEQ16778 126 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 IMPG1Q17R60 797 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 ACOT6Q3I5F7 207 aaPredicted RBP0.71□□□□□ -2.3
PTPN4-212ENST00000488896 HIST2H2BFQ5QNW6 126 aaPredicted RBP0.71□□□□□ -2.3
PTPN4-212ENST00000488896 IBA57Q5T440 356 aaKnown RBP0.71□□□□□ -2.3
PTPN4-212ENST00000488896 ALKAL1Q6UXT8 129 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 Q6ZS49 121 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 Q8N2B8 174 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 TMEM86BQ8N661 226 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 MBD3L1Q8WWY6 194 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 C11orf40Q8WZ69 217 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 HIST1H2BHQ93079 126 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 OR52E6Q96RD3 313 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 PHB2Q99623 299 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 SIGMAR1Q99720 223 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 HIST1H2BNQ99877 126 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 HIST1H2BMQ99879 126 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 CMSS1Q9BQ75 279 aaKnown RBP0.71□□□□□ -2.3
PTPN4-212ENST00000488896 ADAT1Q9BUB4 502 aaKnown RBP0.71□□□□□ -2.3
PTPN4-212ENST00000488896 C14orf105Q9NVL8 296 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 SCAF11Q99590 1463 aaKnown RBP0.71□□□□□ -2.3
PTPN4-212ENST00000488896 RALGAPA2Q2PPJ7 1873 aa0.71□□□□□ -2.3
PTPN4-212ENST00000488896 FLT4P35916 1363 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 DOCK5Q9H7D0 1870 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 A0A087WUJ7 227 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 A0A0D9SG52 128 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 TRAPPC13A5PLN9 417 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 DPRXA6NFQ7 191 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 OR51F1A6NGY5 319 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 IBA57-AS1B1ANH7 110 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 F8W036 122 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 CHP2O43745 196 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 PDE6DO43924 150 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 OR5F1O95221 314 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 S100A6P06703 90 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 CRYGAP11844 174 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 SPI1P17947 270 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 NFYAP23511 347 aaPredicted RBP0.7□□□□□ -2.3
PTPN4-212ENST00000488896 FXYD2P54710 66 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 BASP1P80723 227 aaKnown RBP0.7□□□□□ -2.3
PTPN4-212ENST00000488896 KHDC3LQ587J8 217 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 SPANXN3Q5MJ09 141 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 S100A7AQ86SG5 101 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 DHFR2Q86XF0 187 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 ZNF565Q8N9K5 539 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 OR4E2Q8NGC2 313 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 OR5A1Q8NGJ0 315 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 SLC25A40Q8TBP6 338 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 MRPL30Q8TCC3 161 aaKnown RBP0.7□□□□□ -2.3
PTPN4-212ENST00000488896 RASSF5Q8WWW0 418 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 CEP19Q96LK0 163 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 NIPSNAP1Q9BPW8 284 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 TMEM147Q9BVK8 224 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 KIFC1Q9BW19 673 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 TRIM4Q9C037 500 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 OSTCQ9NRP0 149 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 FBXO5Q9UKT4 447 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 UTP11Q9Y3A2 253 aaKnown RBP0.7□□□□□ -2.3
PTPN4-212ENST00000488896 FAM32AQ9Y421 112 aaKnown RBP0.7□□□□□ -2.3
PTPN4-212ENST00000488896 KIF24Q5T7B8 1368 aa0.7□□□□□ -2.3
PTPN4-212ENST00000488896 NCOA6Q14686 2063 aaPredicted RBP0.69□□□□□ -2.3
PTPN4-212ENST00000488896 MYO3BQ8WXR4 1341 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 SCN10AQ9Y5Y9 1956 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 SMARCA4P51532 1647 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 TRAV3A0A0B4J244 114 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 TRAV26-2A0A0B4J265 109 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 EXOC1LA0A1B0GW35 172 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 SMIM9A6NGZ8 99 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 TMEM114B3SHH9 223 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 CLDN25C9JDP6 229 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 KPNA3O00505 521 aaPredicted RBP0.69□□□□□ -2.3
PTPN4-212ENST00000488896 CST8O60676 142 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 E2F6O75461 281 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 IFNA10P01566 189 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 TCRBP04435 133 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 SERPINA6P08185 405 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 HTR1AP08908 422 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 MGST1P10620 155 aaKnown RBP0.69□□□□□ -2.3
PTPN4-212ENST00000488896 CASP1P29466 404 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 ANP32AP39687 249 aaKnown RBP0.69□□□□□ -2.3
PTPN4-212ENST00000488896 LSM6P62312 80 aaKnown RBP0.69□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms