RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 COL6A5A8TX70 2615 aa9.53□□□□□ -0.88
SDC1-206ENST00000482879 TCRBV4S1A1TA0A5B7 111 aa9.53□□□□□ -0.88
SDC1-206ENST00000482879 C15orf62A8K5M9 175 aa9.53□□□□□ -0.88
SDC1-206ENST00000482879 E5RGE8 158 aa9.53□□□□□ -0.88
SDC1-206ENST00000482879 TSC22D2O75157 780 aa9.53□□□□□ -0.88
SDC1-206ENST00000482879 CCNKO75909 580 aa9.53□□□□□ -0.88
SDC1-206ENST00000482879 NDUFB8O95169 186 aa9.53□□□□□ -0.88
SDC1-206ENST00000482879 IFNA4P05014 189 aa9.53□□□□□ -0.88
SDC1-206ENST00000482879 CAV2P51636 162 aa9.53□□□□□ -0.88
SDC1-206ENST00000482879 KRTAP10-3P60369 221 aa9.53□□□□□ -0.88
SDC1-206ENST00000482879 RAB11AP62491 216 aa9.53□□□□□ -0.88
SDC1-206ENST00000482879 DEFA5Q01523 94 aa9.53□□□□□ -0.88
SDC1-206ENST00000482879 KLK9Q2XQG4 91 aa9.53□□□□□ -0.88
SDC1-206ENST00000482879 Q5BKY6 102 aa9.53□□□□□ -0.88
SDC1-206ENST00000482879 TCTEX1D4Q5JR98 221 aa9.53□□□□□ -0.88
SDC1-206ENST00000482879 PVRIGQ6DKI7 326 aa9.53□□□□□ -0.88
SDC1-206ENST00000482879 PRSS54Q6PEW0 395 aa9.53□□□□□ -0.88
SDC1-206ENST00000482879 RNF152Q8N8N0 203 aa9.53□□□□□ -0.88
SDC1-206ENST00000482879 NECAP1Q8NC96 275 aa9.53□□□□□ -0.88
SDC1-206ENST00000482879 THAP6Q8TBB0 222 aa9.53□□□□□ -0.88
SDC1-206ENST00000482879 TMEM170AQ8WVE7 144 aa9.53□□□□□ -0.88
SDC1-206ENST00000482879 WFDC12Q8WWY7 111 aa9.53□□□□□ -0.88
SDC1-206ENST00000482879 MBD2Q9UBB5 411 aa9.53□□□□□ -0.88
SDC1-206ENST00000482879 KLK9Q9UKQ9 250 aa9.53□□□□□ -0.88
SDC1-206ENST00000482879 TRAV14DV4A0A0A6YYC5 116 aa9.52□□□□□ -0.89
SDC1-206ENST00000482879 IGHV3-21A0A0B4J1V1 117 aa9.52□□□□□ -0.89
SDC1-206ENST00000482879 A0A0G2JLM5 398 aa9.52□□□□□ -0.89
SDC1-206ENST00000482879 FAM24AA6NFZ4 105 aa9.52□□□□□ -0.89
SDC1-206ENST00000482879 FAM223BA6NKX1 122 aa9.52□□□□□ -0.89
SDC1-206ENST00000482879 CORTO00230 105 aa9.52□□□□□ -0.89
SDC1-206ENST00000482879 OR8U8P0C7N1 319 aa9.52□□□□□ -0.89
SDC1-206ENST00000482879 ATP5G2Q06055 141 aa9.52□□□□□ -0.89
SDC1-206ENST00000482879 KIAA0141Q14154 515 aaPredicted RBP9.52□□□□□ -0.89
SDC1-206ENST00000482879 KHDC1LQ5JSQ8 128 aa9.52□□□□□ -0.89
SDC1-206ENST00000482879 HIST2H2BDQ6DRA6 164 aa9.52□□□□□ -0.89
SDC1-206ENST00000482879 C12orf54Q6X4T0 127 aa9.52□□□□□ -0.89
SDC1-206ENST00000482879 ETV3LQ6ZN32 361 aa9.52□□□□□ -0.89
SDC1-206ENST00000482879 AKAP14Q86UN6 197 aa9.52□□□□□ -0.89
SDC1-206ENST00000482879 FAM223AQ8IWN6 122 aa9.52□□□□□ -0.89
SDC1-206ENST00000482879 ZNF491Q8N8L2 437 aa9.52□□□□□ -0.89
SDC1-206ENST00000482879 RNASEH2CQ8TDP1 164 aaKnown RBP9.52□□□□□ -0.89
SDC1-206ENST00000482879 PINX1Q96BK5 328 aaKnown RBP9.52□□□□□ -0.89
SDC1-206ENST00000482879 USMG5Q96IX5 58 aa9.52□□□□□ -0.89
SDC1-206ENST00000482879 ST6GAL2Q96JF0 529 aa9.52□□□□□ -0.89
SDC1-206ENST00000482879 WNK1Q9H4A3 2382 aa9.51□□□□□ -0.89
SDC1-206ENST00000482879 FBN1P35555 2871 aaKnown RBP9.51□□□□□ -0.89
SDC1-206ENST00000482879 SMLR1H3BR10 107 aa9.51□□□□□ -0.89
SDC1-206ENST00000482879 MT-CO2P00403 227 aa9.51□□□□□ -0.89
SDC1-206ENST00000482879 METTL15P1P0C7V9 234 aa9.51□□□□□ -0.89
SDC1-206ENST00000482879 OPRK1P41145 380 aa9.51□□□□□ -0.89
SDC1-206ENST00000482879 P2RY1P47900 373 aa9.51□□□□□ -0.89
SDC1-206ENST00000482879 EXOSC2Q13868 293 aaKnown RBP9.51□□□□□ -0.89
SDC1-206ENST00000482879 C15orf32Q32M92 178 aa9.51□□□□□ -0.89
SDC1-206ENST00000482879 TMEM14EPQ6UXP3 125 aa9.51□□□□□ -0.89
SDC1-206ENST00000482879 MYOZ3Q8TDC0 251 aa9.51□□□□□ -0.89
SDC1-206ENST00000482879 DCUN1D4Q92564 292 aa9.51□□□□□ -0.89
SDC1-206ENST00000482879 CITED2Q99967 270 aaPredicted RBP9.51□□□□□ -0.89
SDC1-206ENST00000482879 LYRM2Q9NU23 88 aaPredicted RBP9.51□□□□□ -0.89
SDC1-206ENST00000482879 MFSD2BA6NFX1 497 aa9.5□□□□□ -0.89
SDC1-206ENST00000482879 I3L2K1 104 aa9.5□□□□□ -0.89
SDC1-206ENST00000482879 K7EIM0 57 aa9.5□□□□□ -0.89
SDC1-206ENST00000482879 IGHV3-11P01762 117 aa9.5□□□□□ -0.89
SDC1-206ENST00000482879 IGHV3-48P01763 117 aa9.5□□□□□ -0.89
SDC1-206ENST00000482879 SLC25A4P12235 298 aa9.5□□□□□ -0.89
SDC1-206ENST00000482879 LYL1P12980 280 aa9.5□□□□□ -0.89
SDC1-206ENST00000482879 MLANAQ16655 118 aa9.5□□□□□ -0.89
SDC1-206ENST00000482879 OR8G2PQ6IF36 304 aa9.5□□□□□ -0.89
SDC1-206ENST00000482879 TMEM252Q8N6L7 170 aa9.5□□□□□ -0.89
SDC1-206ENST00000482879 VN1R17PQ8TDU5 208 aa9.5□□□□□ -0.89
SDC1-206ENST00000482879 SCARB1Q8WTV0 552 aa9.5□□□□□ -0.89
SDC1-206ENST00000482879 EEF1AKMT3Q96AZ1 226 aa9.5□□□□□ -0.89
SDC1-206ENST00000482879 CXorf58Q96LI9 332 aa9.5□□□□□ -0.89
SDC1-206ENST00000482879 UBE2E2Q96LR5 201 aa9.5□□□□□ -0.89
SDC1-206ENST00000482879 SLC25A31Q9H0C2 315 aa9.5□□□□□ -0.89
SDC1-206ENST00000482879 TSSC4Q9Y5U2 329 aaPredicted RBP9.5□□□□□ -0.89
SDC1-206ENST00000482879 S4R3C0 116 aa9.5□□□□□ -0.89
SDC1-206ENST00000482879 FXYD6-FXYD2A0A087WZ82 144 aa9.49□□□□□ -0.89
SDC1-206ENST00000482879 RPS10-NUDT3A0A1W2PQS6 291 aa9.49□□□□□ -0.89
SDC1-206ENST00000482879 A0A1W2PRX2 142 aa9.49□□□□□ -0.89
SDC1-206ENST00000482879 IGSF23A1L1A6 192 aa9.49□□□□□ -0.89
SDC1-206ENST00000482879 PMS2P5A8MQ11 134 aa9.49□□□□□ -0.89
SDC1-206ENST00000482879 G3V3Q6 166 aa9.49□□□□□ -0.89
SDC1-206ENST00000482879 CST7O76096 145 aa9.49□□□□□ -0.89
SDC1-206ENST00000482879 IGHV3-23P01764 117 aa9.49□□□□□ -0.89
SDC1-206ENST00000482879 CDX1P47902 265 aaPredicted RBP9.49□□□□□ -0.89
SDC1-206ENST00000482879 CD69Q07108 199 aa9.49□□□□□ -0.89
SDC1-206ENST00000482879 ETFRF1Q6IPR1 90 aa9.49□□□□□ -0.89
SDC1-206ENST00000482879 C18orf65Q6ZTR6 163 aa9.49□□□□□ -0.89
SDC1-206ENST00000482879 TCTE3Q8IZS6 198 aa9.49□□□□□ -0.89
SDC1-206ENST00000482879 C3orf56Q8N813 242 aa9.49□□□□□ -0.89
SDC1-206ENST00000482879 OR10P1Q8NGE3 313 aa9.49□□□□□ -0.89
SDC1-206ENST00000482879 OR5B12Q96R08 314 aa9.49□□□□□ -0.89
SDC1-206ENST00000482879 MDFIQ99750 246 aa9.49□□□□□ -0.89
SDC1-206ENST00000482879 ZNF747Q9BV97 191 aa9.49□□□□□ -0.89
SDC1-206ENST00000482879 FNDC4Q9H6D8 234 aaPredicted RBP9.49□□□□□ -0.89
SDC1-206ENST00000482879 GNB4Q9HAV0 340 aa9.49□□□□□ -0.89
SDC1-206ENST00000482879 ZC4H2Q9NQZ6 224 aa9.49□□□□□ -0.89
SDC1-206ENST00000482879 C21orf62Q9NYP8 219 aa9.49□□□□□ -0.89
SDC1-206ENST00000482879 STAB1Q9NY15 2570 aa9.49□□□□□ -0.89
SDC1-206ENST00000482879 TRBV7-1A0A0A6YYK4 115 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms