RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 CXorf58Q96LI9 332 aa6.48□□□□□ -1.37
SYNE1-225ENST00000481502 PARD6GQ9BYG4 376 aaPredicted RBP6.48□□□□□ -1.37
SYNE1-225ENST00000481502 SERTAD4Q9NUC0 356 aa6.48□□□□□ -1.37
SYNE1-225ENST00000481502 OR5AC2Q9NZP5 309 aa6.48□□□□□ -1.37
SYNE1-225ENST00000481502 TRAV30A0A087WSZ9 112 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 TRBV7-1A0A0A6YYK4 115 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 CLPSL1A2RUU4 121 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 PSMB11A5LHX3 300 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 PMS2P5A8MQ11 134 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 MPDU1O75352 247 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 SCGB2A1O75556 95 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 OPN1MWP04001 364 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 IFNA4P05014 189 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 OPN1MW2P0DN77 364 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 OPN1MW3P0DN78 364 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 IAPPP10997 89 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 MYOD1P15172 320 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 AREGP15514 252 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 PSMB8P28062 276 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 EIF5AP63241 154 aaKnown RBP6.47□□□□□ -1.37
SYNE1-225ENST00000481502 DLK1P80370 383 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 CD69Q07108 199 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 ZNF266Q14584 549 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 Q5BKY6 102 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 ARSJQ5FYB0 599 aaPredicted RBP6.47□□□□□ -1.37
SYNE1-225ENST00000481502 CENPVQ7Z7K6 275 aaPredicted RBP6.47□□□□□ -1.37
SYNE1-225ENST00000481502 TMEM116Q8NCL8 245 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 LINC01006Q8NI28 216 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 WIPF2Q8TF74 440 aaPredicted RBP6.47□□□□□ -1.37
SYNE1-225ENST00000481502 FANCD2OSQ96PS1 177 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 FAM103A1Q9BTL3 118 aaKnown RBP6.47□□□□□ -1.37
SYNE1-225ENST00000481502 MFFQ9GZY8 342 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 NPVFQ9HCQ7 196 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 TNFRSF19Q9NS68 423 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 FBXO7Q9Y3I1 522 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 HSPB11Q9Y547 144 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 C2CD3Q4AC94 2353 aa6.47□□□□□ -1.37
SYNE1-225ENST00000481502 FXYD6-FXYD2A0A087WZ82 144 aa6.46□□□□□ -1.38
SYNE1-225ENST00000481502 FAM24AA6NFZ4 105 aa6.46□□□□□ -1.38
SYNE1-225ENST00000481502 LINC01548A6NM66 108 aa6.46□□□□□ -1.38
SYNE1-225ENST00000481502 PRSS46E5RG02 174 aa6.46□□□□□ -1.38
SYNE1-225ENST00000481502 LCE2BO14633 110 aa6.46□□□□□ -1.38
SYNE1-225ENST00000481502 JTBO76095 146 aa6.46□□□□□ -1.38
SYNE1-225ENST00000481502 NPBWR1P48145 328 aa6.46□□□□□ -1.38
SYNE1-225ENST00000481502 RAB9AP51151 201 aa6.46□□□□□ -1.38
SYNE1-225ENST00000481502 EWSR1Q01844 656 aaKnown RBP eCLIP6.46□□□□□ -1.38
SYNE1-225ENST00000481502 ECSCRQ19T08 205 aa6.46□□□□□ -1.38
SYNE1-225ENST00000481502 VWC2Q2TAL6 325 aa6.46□□□□□ -1.38
SYNE1-225ENST00000481502 TET2Q6N021 2002 aaPredicted RBP6.46□□□□□ -1.38
SYNE1-225ENST00000481502 SLC25A24Q6NUK1 477 aa6.46□□□□□ -1.38
SYNE1-225ENST00000481502 KCNRGQ8N5I3 272 aa6.46□□□□□ -1.38
SYNE1-225ENST00000481502 OR4X2Q8NGF9 303 aa6.46□□□□□ -1.38
SYNE1-225ENST00000481502 OR1S2Q8NGQ3 325 aa6.46□□□□□ -1.38
SYNE1-225ENST00000481502 MYOZ3Q8TDC0 251 aa6.46□□□□□ -1.38
SYNE1-225ENST00000481502 TMEM170AQ8WVE7 144 aa6.46□□□□□ -1.38
SYNE1-225ENST00000481502 RBMXL1Q96E39 390 aaKnown RBP6.46□□□□□ -1.38
SYNE1-225ENST00000481502 UBE2E2Q96LR5 201 aa6.46□□□□□ -1.38
SYNE1-225ENST00000481502 DUX5Q96PT3 197 aa6.46□□□□□ -1.38
SYNE1-225ENST00000481502 OR4C12Q96R67 309 aa6.46□□□□□ -1.38
SYNE1-225ENST00000481502 JMJD1CQ15652 2540 aa6.46□□□□□ -1.38
SYNE1-225ENST00000481502 ANK3Q12955 4377 aaKnown RBP6.45□□□□□ -1.38
SYNE1-225ENST00000481502 RNF222A6NCQ9 220 aa6.45□□□□□ -1.38
SYNE1-225ENST00000481502 G3V318 75 aa6.45□□□□□ -1.38
SYNE1-225ENST00000481502 I3L2K1 104 aa6.45□□□□□ -1.38
SYNE1-225ENST00000481502 ARPC5O15511 151 aa6.45□□□□□ -1.38
SYNE1-225ENST00000481502 CFDP00746 253 aaPredicted RBP6.45□□□□□ -1.38
SYNE1-225ENST00000481502 CDX1P47902 265 aaPredicted RBP6.45□□□□□ -1.38
SYNE1-225ENST00000481502 MFAP4P55083 255 aa6.45□□□□□ -1.38
SYNE1-225ENST00000481502 PROK1P58294 105 aa6.45□□□□□ -1.38
SYNE1-225ENST00000481502 SPINK9Q5DT21 86 aa6.45□□□□□ -1.38
SYNE1-225ENST00000481502 SPSB3Q6PJ21 355 aa6.45□□□□□ -1.38
SYNE1-225ENST00000481502 Q6ZS46 218 aa6.45□□□□□ -1.38
SYNE1-225ENST00000481502 TMEM144Q7Z5S9 345 aa6.45□□□□□ -1.38
SYNE1-225ENST00000481502 KLHDC1Q8N7A1 406 aa6.45□□□□□ -1.38
SYNE1-225ENST00000481502 OR5T1Q8NG75 326 aa6.45□□□□□ -1.38
SYNE1-225ENST00000481502 OR11H4Q8NGC9 324 aa6.45□□□□□ -1.38
SYNE1-225ENST00000481502 OR4X1Q8NH49 305 aa6.45□□□□□ -1.38
SYNE1-225ENST00000481502 SLC35E1Q96K37 410 aa6.45□□□□□ -1.38
SYNE1-225ENST00000481502 TMEM147Q9BVK8 224 aa6.45□□□□□ -1.38
SYNE1-225ENST00000481502 TEP1Q99973 2627 aaKnown RBP6.44□□□□□ -1.38
SYNE1-225ENST00000481502 BORCS7-ASMTA0A0B4J1R7 106 aa6.44□□□□□ -1.38
SYNE1-225ENST00000481502 IGSF23A1L1A6 192 aa6.44□□□□□ -1.38
SYNE1-225ENST00000481502 SH2D7A6NKC9 451 aaPredicted RBP6.44□□□□□ -1.38
SYNE1-225ENST00000481502 H3BP45 60 aa6.44□□□□□ -1.38
SYNE1-225ENST00000481502 K7EIM0 57 aa6.44□□□□□ -1.38
SYNE1-225ENST00000481502 NXPH3O95157 252 aa6.44□□□□□ -1.38
SYNE1-225ENST00000481502 MT-CO2P00403 227 aa6.44□□□□□ -1.38
SYNE1-225ENST00000481502 FABP1P07148 127 aa6.44□□□□□ -1.38
SYNE1-225ENST00000481502 METTL15P1P0C7V9 234 aa6.44□□□□□ -1.38
SYNE1-225ENST00000481502 MDKP21741 143 aaPredicted RBP6.44□□□□□ -1.38
SYNE1-225ENST00000481502 OPRK1P41145 380 aa6.44□□□□□ -1.38
SYNE1-225ENST00000481502 MFAP2P55001 183 aa6.44□□□□□ -1.38
SYNE1-225ENST00000481502 SELENOTP62341 195 aa6.44□□□□□ -1.38
SYNE1-225ENST00000481502 RHOGP84095 191 aa6.44□□□□□ -1.38
SYNE1-225ENST00000481502 RUNX1Q01196 453 aa6.44□□□□□ -1.38
SYNE1-225ENST00000481502 NHLH2Q02577 135 aa6.44□□□□□ -1.38
SYNE1-225ENST00000481502 ATP5G2Q06055 141 aa6.44□□□□□ -1.38
SYNE1-225ENST00000481502 SLC38A11Q08AI6 406 aa6.44□□□□□ -1.38
SYNE1-225ENST00000481502 RAB31Q13636 194 aa6.44□□□□□ -1.38
SYNE1-225ENST00000481502 UBAC2Q8NBM4 344 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms