RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 FAM219AQ8IW50 185 aa16.34■□□□□ 0.21
COL9A3-211ENST00000477612 ZNF414Q96IQ9 312 aa16.34■□□□□ 0.21
COL9A3-211ENST00000477612 NAA60Q9H7X0 242 aa16.34■□□□□ 0.21
COL9A3-211ENST00000477612 TUBA4BQ9H853 241 aa16.34■□□□□ 0.21
COL9A3-211ENST00000477612 A0A0G2JRQ6 117 aa16.33■□□□□ 0.2
COL9A3-211ENST00000477612 ST8SIA3O43173 380 aa16.33■□□□□ 0.2
COL9A3-211ENST00000477612 OR5AC1P0C628 307 aa16.33■□□□□ 0.2
COL9A3-211ENST00000477612 MFAP4P55083 255 aa16.33■□□□□ 0.2
COL9A3-211ENST00000477612 GUCA2BQ16661 112 aa16.33■□□□□ 0.2
COL9A3-211ENST00000477612 OR51S1Q8NGJ8 323 aa16.33■□□□□ 0.2
COL9A3-211ENST00000477612 RRNAD1Q96FB5 475 aaKnown RBP16.33■□□□□ 0.2
COL9A3-211ENST00000477612 CRYM-AS1A6NIL9 109 aa16.32■□□□□ 0.2
COL9A3-211ENST00000477612 DHODHQ02127 395 aa16.32■□□□□ 0.2
COL9A3-211ENST00000477612 Q56UQ5 140 aa16.32■□□□□ 0.2
COL9A3-211ENST00000477612 BTNL8Q6UX41 500 aa16.32■□□□□ 0.2
COL9A3-211ENST00000477612 LHFPL5Q8TAF8 219 aa16.32■□□□□ 0.2
COL9A3-211ENST00000477612 RBM38Q9H0Z9 239 aaKnown RBP16.32■□□□□ 0.2
COL9A3-211ENST00000477612 DAZ1Q9NQZ3 744 aaKnown RBP16.32■□□□□ 0.2
COL9A3-211ENST00000477612 OR11H12B2RN74 326 aa16.31■□□□□ 0.2
COL9A3-211ENST00000477612 C3orf84H3BNL1 204 aa16.31■□□□□ 0.2
COL9A3-211ENST00000477612 MT-CO2P00403 227 aa16.31■□□□□ 0.2
COL9A3-211ENST00000477612 Q6ZRM9 215 aa16.31■□□□□ 0.2
COL9A3-211ENST00000477612 UBAC2Q8NBM4 344 aa16.31■□□□□ 0.2
COL9A3-211ENST00000477612 RBPMSQ93062 196 aaKnown RBP16.31■□□□□ 0.2
COL9A3-211ENST00000477612 MISP3Q96FF7 219 aa16.31■□□□□ 0.2
COL9A3-211ENST00000477612 SPATA25Q9BR10 227 aa16.31■□□□□ 0.2
COL9A3-211ENST00000477612 SCP2D1Q9UJQ7 156 aa16.31■□□□□ 0.2
COL9A3-211ENST00000477612 C15orf62A8K5M9 175 aa16.3■□□□□ 0.2
COL9A3-211ENST00000477612 IFNA17P01571 189 aa16.3■□□□□ 0.2
COL9A3-211ENST00000477612 ANKRD55Q3KP44 614 aa16.3■□□□□ 0.2
COL9A3-211ENST00000477612 SELENOHQ8IZQ5 122 aaKnown RBP16.3■□□□□ 0.2
COL9A3-211ENST00000477612 DEFB125Q8N687 156 aa16.3■□□□□ 0.2
COL9A3-211ENST00000477612 SLC35G3Q8N808 338 aa16.3■□□□□ 0.2
COL9A3-211ENST00000477612 OR52E5Q8NH55 327 aa16.3■□□□□ 0.2
COL9A3-211ENST00000477612 GALNT14Q96FL9 552 aa16.3■□□□□ 0.2
COL9A3-211ENST00000477612 SCGB3A2Q96PL1 93 aa16.3■□□□□ 0.2
COL9A3-211ENST00000477612 CITED4Q96RK1 184 aa16.3■□□□□ 0.2
COL9A3-211ENST00000477612 PDCD10Q9BUL8 212 aa16.3■□□□□ 0.2
COL9A3-211ENST00000477612 TMEM56-RWDD3S4R434 201 aa16.3■□□□□ 0.2
COL9A3-211ENST00000477612 NUPL2O15504 423 aaKnown RBP16.29■□□□□ 0.2
COL9A3-211ENST00000477612 RNASE2P10153 161 aaKnown RBP16.29■□□□□ 0.2
COL9A3-211ENST00000477612 SNCAP37840 140 aa16.29■□□□□ 0.2
COL9A3-211ENST00000477612 ETV6P41212 452 aa16.29■□□□□ 0.2
COL9A3-211ENST00000477612 RELQ04864 619 aaPredicted RBP16.29■□□□□ 0.2
COL9A3-211ENST00000477612 BSXQ3C1V8 233 aa16.29■□□□□ 0.2
COL9A3-211ENST00000477612 SPINK9Q5DT21 86 aa16.29■□□□□ 0.2
COL9A3-211ENST00000477612 SLC16A13Q7RTY0 426 aa16.29■□□□□ 0.2
COL9A3-211ENST00000477612 OR10C1Q96KK4 312 aa16.29■□□□□ 0.2
COL9A3-211ENST00000477612 SELENOKQ9Y6D0 94 aa16.29■□□□□ 0.2
COL9A3-211ENST00000477612 NBEAL2Q6ZNJ1 2754 aa16.29■□□□□ 0.2
COL9A3-211ENST00000477612 RBMY1BA6NDE4 496 aaKnown RBP16.28■□□□□ 0.2
COL9A3-211ENST00000477612 RBMY1EA6NEQ0 496 aaKnown RBP16.28■□□□□ 0.2
COL9A3-211ENST00000477612 ZNF701M0R085 212 aaPredicted RBP16.28■□□□□ 0.2
COL9A3-211ENST00000477612 CORTO00230 105 aa16.28■□□□□ 0.2
COL9A3-211ENST00000477612 TSPAN4O14817 238 aa16.28■□□□□ 0.2
COL9A3-211ENST00000477612 SCAF4O95104 1147 aaKnown RBP16.28■□□□□ 0.2
COL9A3-211ENST00000477612 RBMY1DP0C7P1 496 aaKnown RBP16.28■□□□□ 0.2
COL9A3-211ENST00000477612 SUB1P53999 127 aaKnown RBP eCLIP16.28■□□□□ 0.2
COL9A3-211ENST00000477612 RBPMS2Q6ZRY4 209 aaKnown RBP16.28■□□□□ 0.2
COL9A3-211ENST00000477612 IL22RA2Q969J5 263 aa16.28■□□□□ 0.2
COL9A3-211ENST00000477612 TRIM63Q969Q1 353 aa16.28■□□□□ 0.2
COL9A3-211ENST00000477612 TMEM230Q96A57 120 aa16.28■□□□□ 0.2
COL9A3-211ENST00000477612 WFDC10AQ9H1F0 79 aa16.28■□□□□ 0.2
COL9A3-211ENST00000477612 CTNNBIP1Q9NSA3 81 aaPredicted RBP16.28■□□□□ 0.2
COL9A3-211ENST00000477612 V9GYH0 126 aa16.28■□□□□ 0.2
COL9A3-211ENST00000477612 SPCS3P61009 180 aa16.27■□□□□ 0.2
COL9A3-211ENST00000477612 OR52B4Q8NGK2 314 aa16.27■□□□□ 0.2
COL9A3-211ENST00000477612 MUC7Q8TAX7 377 aa16.27■□□□□ 0.2
COL9A3-211ENST00000477612 PINX1Q96BK5 328 aaKnown RBP16.27■□□□□ 0.2
COL9A3-211ENST00000477612 SPAG8Q99932 426 aaPredicted RBP16.27■□□□□ 0.2
COL9A3-211ENST00000477612 SRD5A3Q9H8P0 318 aa16.27■□□□□ 0.2
COL9A3-211ENST00000477612 EDA2RQ9HAV5 297 aa16.27■□□□□ 0.2
COL9A3-211ENST00000477612 KCNIP3Q9Y2W7 256 aa16.27■□□□□ 0.2
COL9A3-211ENST00000477612 KLF9Q13886 244 aaPredicted RBP16.26■□□□□ 0.19
COL9A3-211ENST00000477612 TMEM187Q14656 261 aa16.26■□□□□ 0.19
COL9A3-211ENST00000477612 TMEM268Q5VZI3 342 aa16.26■□□□□ 0.19
COL9A3-211ENST00000477612 LAMTOR1Q6IAA8 161 aa16.26■□□□□ 0.19
COL9A3-211ENST00000477612 DUSP18Q8NEJ0 188 aa16.26■□□□□ 0.19
COL9A3-211ENST00000477612 RNASE11Q8TAA1 199 aaKnown RBP16.26■□□□□ 0.19
COL9A3-211ENST00000477612 DEDD2Q8WXF8 326 aa16.26■□□□□ 0.19
COL9A3-211ENST00000477612 GPR146Q96CH1 333 aa16.26■□□□□ 0.19
COL9A3-211ENST00000477612 C20orf24Q9BUV8 137 aa16.26■□□□□ 0.19
COL9A3-211ENST00000477612 HIPK2Q9H2X6 1198 aa16.26■□□□□ 0.19
COL9A3-211ENST00000477612 SMPXQ9UHP9 88 aa16.26■□□□□ 0.19
COL9A3-211ENST00000477612 CCDC160A6NGH7 325 aa16.25■□□□□ 0.19
COL9A3-211ENST00000477612 GNG7O60262 68 aa16.25■□□□□ 0.19
COL9A3-211ENST00000477612 IGHV3-48P01763 117 aa16.25■□□□□ 0.19
COL9A3-211ENST00000477612 NPBWR1P48145 328 aa16.25■□□□□ 0.19
COL9A3-211ENST00000477612 ZNF79Q15937 498 aa16.25■□□□□ 0.19
COL9A3-211ENST00000477612 CCDC190Q86UF4 302 aa16.25■□□□□ 0.19
COL9A3-211ENST00000477612 ENY2Q9NPA8 101 aa16.25■□□□□ 0.19
COL9A3-211ENST00000477612 TMEM50AO95807 157 aa16.24■□□□□ 0.19
COL9A3-211ENST00000477612 S100A5P33763 92 aa16.24■□□□□ 0.19
COL9A3-211ENST00000477612 HOXA1P49639 335 aaPredicted RBP16.24■□□□□ 0.19
COL9A3-211ENST00000477612 SUPT4H1P63272 117 aaKnown RBP16.24■□□□□ 0.19
COL9A3-211ENST00000477612 MCUBQ9NWR8 336 aa16.24■□□□□ 0.19
COL9A3-211ENST00000477612 CACNG5Q9UF02 275 aa16.24■□□□□ 0.19
COL9A3-211ENST00000477612 CACFD1Q9UGQ2 172 aa16.24■□□□□ 0.19
COL9A3-211ENST00000477612 CSMD3Q7Z407 3707 aa16.23■□□□□ 0.19
COL9A3-211ENST00000477612 IGHV7-4-1A0A0J9YVY3 117 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms