RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 FABP2P12104 132 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 LCE2DQ5TA82 110 aaPredicted RBP2.78□□□□□ -1.96
UBR3-208ENST00000474426 Q6ZQT7 251 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 SFTPA2Q8IWL1 248 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 SFTPA1Q8IWL2 248 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 LY6G5BQ8NDX9 201 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 FRG2BQ96QU4 278 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 PRR25Q96S07 402 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 TM2D3Q9BRN9 247 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 PLA2G2DQ9UNK4 145 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 NOP16Q9Y3C1 178 aaKnown RBP2.78□□□□□ -1.96
UBR3-208ENST00000474426 MCM3APO60318 1980 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 PLCH1Q4KWH8 1693 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 GTF3C1Q12789 2109 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 PHF3Q92576 2039 aaKnown RBP2.78□□□□□ -1.97
UBR3-208ENST00000474426 CASP8AP2Q9UKL3 1982 aa2.78□□□□□ -1.97
UBR3-208ENST00000474426 TRAV9-2A0A087WT02 112 aa2.78□□□□□ -1.97
UBR3-208ENST00000474426 KNCNA6PVL3 124 aa2.78□□□□□ -1.97
UBR3-208ENST00000474426 APOMO95445 188 aa2.78□□□□□ -1.97
UBR3-208ENST00000474426 CD3DP04234 171 aa2.78□□□□□ -1.97
UBR3-208ENST00000474426 KLF9Q13886 244 aaPredicted RBP2.78□□□□□ -1.97
UBR3-208ENST00000474426 MRPL2Q5T653 305 aaKnown RBP2.78□□□□□ -1.97
UBR3-208ENST00000474426 SGMS2Q8NHU3 365 aa2.78□□□□□ -1.97
UBR3-208ENST00000474426 RPS4Y2Q8TD47 263 aa2.78□□□□□ -1.97
UBR3-208ENST00000474426 C17orf77Q96MU5 243 aa2.78□□□□□ -1.97
UBR3-208ENST00000474426 AGPAT4-IT1Q9H0P7 198 aa2.78□□□□□ -1.97
UBR3-208ENST00000474426 PLA2G2EQ9NZK7 142 aa2.78□□□□□ -1.97
UBR3-208ENST00000474426 TP73-AS1Q9UF72 201 aa2.78□□□□□ -1.97
UBR3-208ENST00000474426 PXDNLA1KZ92 1463 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 A0A1B0GV50 99 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 SYS1-DBNDD2H3BUS1 97 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 CDX4O14627 284 aaPredicted RBP2.77□□□□□ -1.97
UBR3-208ENST00000474426 TCRAP04437 139 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 GYPEP15421 78 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 FKBP1AP62942 108 aaKnown RBP2.77□□□□□ -1.97
UBR3-208ENST00000474426 TNP2Q05952 138 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 TAF10Q12962 218 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 OR7A5Q15622 319 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 NMSQ5H8A3 153 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 PVRIGQ6DKI7 326 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 GAGE2AQ6NT46 116 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 ANKRD29Q8N6D5 301 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 NABP1Q96AH0 204 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 SLC25A38Q96DW6 304 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 DSCR8Q96T75 97 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 PTPN23Q9H3S7 1636 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 KIAA1549Q9HCM3 1950 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 DNMT1P26358 1616 aaKnown RBP2.77□□□□□ -1.97
UBR3-208ENST00000474426 A0A0D9SEW6 157 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 CCDC195A0A1B0GUA6 201 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 DPRXA6NFQ7 191 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 LYZL6O75951 148 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 ZNF883P0CG24 379 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 COX5AP20674 150 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 SFTPDP35247 375 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 CA7P43166 264 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 TAS2R45P59539 299 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 FOXC1Q12948 553 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 PMCHL1Q16048 86 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 FAM182BQ5T319 152 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 KCTD18Q6PI47 426 aaPredicted RBP2.77□□□□□ -1.97
UBR3-208ENST00000474426 SLC25A34Q6PIV7 304 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 ZCCHC23Q6ZST2 131 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 SCGB1C1Q8TD33 95 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 TVP23CQ96ET8 276 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 NUDT4Q9NZJ9 180 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 U3KQE9 123 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 DOCK8Q8NF50 2099 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 TRAV13-1A0A0B4J241 112 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 IZUMO1RA6ND01 250 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 RRHO14718 337 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 IGHA1P01876 353 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 COL11A2P13942 1736 aaPredicted RBP2.77□□□□□ -1.97
UBR3-208ENST00000474426 ZNF37AP17032 561 aaPredicted RBP2.77□□□□□ -1.97
UBR3-208ENST00000474426 ELK1P19419 428 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 RBMXP38159 391 aaKnown RBP2.77□□□□□ -1.97
UBR3-208ENST00000474426 PTGDSP41222 190 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 PSMB3P49720 205 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 B3GALT5-AS1P59052 145 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 RPS11P62280 158 aaKnown RBP eCLIP2.77□□□□□ -1.97
UBR3-208ENST00000474426 PAX8Q06710 450 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 FUT5Q11128 374 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 MSMO1Q15800 293 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 COMMD6Q7Z4G1 85 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 SLC25A42Q86VD7 318 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 TOMM5Q8N4H5 51 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 NEXN-AS1Q8NBZ9 246 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 STAG3L4Q8TBR4 150 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 TBL1YQ9BQ87 522 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 MRPL20Q9BYC9 149 aaKnown RBP2.77□□□□□ -1.97
UBR3-208ENST00000474426 TAAR2Q9P1P5 351 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 CACNG5Q9UF02 275 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 HES2Q9Y543 173 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 PIK3C2AO00443 1686 aa2.77□□□□□ -1.97
UBR3-208ENST00000474426 ANAPC1Q9H1A4 1944 aa2.76□□□□□ -1.97
UBR3-208ENST00000474426 PLXNA1Q9UIW2 1896 aa2.76□□□□□ -1.97
UBR3-208ENST00000474426 F6UB75 175 aa2.76□□□□□ -1.97
UBR3-208ENST00000474426 ZNF253O75346 499 aa2.76□□□□□ -1.97
UBR3-208ENST00000474426 SNCGO76070 127 aa2.76□□□□□ -1.97
UBR3-208ENST00000474426 OR9G9P0C7N8 305 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms