RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 SNCAP37840 140 aa8.99□□□□□ -0.97
SYNE1-221ENST00000472563 MFAP4P55083 255 aa8.99□□□□□ -0.97
SYNE1-221ENST00000472563 Q56UQ5 140 aa8.99□□□□□ -0.97
SYNE1-221ENST00000472563 BTNL8Q6UX41 500 aa8.99□□□□□ -0.97
SYNE1-221ENST00000472563 SLC16A13Q7RTY0 426 aa8.99□□□□□ -0.97
SYNE1-221ENST00000472563 FAM219AQ8IW50 185 aa8.99□□□□□ -0.97
SYNE1-221ENST00000472563 OR51S1Q8NGJ8 323 aa8.99□□□□□ -0.97
SYNE1-221ENST00000472563 MISP3Q96FF7 219 aa8.99□□□□□ -0.97
SYNE1-221ENST00000472563 SPATA25Q9BR10 227 aa8.99□□□□□ -0.97
SYNE1-221ENST00000472563 C5orf66Q9H5L9 145 aa8.99□□□□□ -0.97
SYNE1-221ENST00000472563 NAA60Q9H7X0 242 aa8.99□□□□□ -0.97
SYNE1-221ENST00000472563 DAZ1Q9NQZ3 744 aaKnown RBP8.99□□□□□ -0.97
SYNE1-221ENST00000472563 C3orf84H3BNL1 204 aa8.98□□□□□ -0.97
SYNE1-221ENST00000472563 K7EMT4 169 aa8.98□□□□□ -0.97
SYNE1-221ENST00000472563 MT-CO2P00403 227 aa8.98□□□□□ -0.97
SYNE1-221ENST00000472563 IFNA17P01571 189 aa8.98□□□□□ -0.97
SYNE1-221ENST00000472563 OR5AC1P0C628 307 aa8.98□□□□□ -0.97
SYNE1-221ENST00000472563 DHODHQ02127 395 aa8.98□□□□□ -0.97
SYNE1-221ENST00000472563 ANKRD55Q3KP44 614 aa8.98□□□□□ -0.97
SYNE1-221ENST00000472563 AARDQ4LEZ3 155 aa8.98□□□□□ -0.97
SYNE1-221ENST00000472563 PVRIGQ6DKI7 326 aa8.98□□□□□ -0.97
SYNE1-221ENST00000472563 RBPMS2Q6ZRY4 209 aaKnown RBP8.98□□□□□ -0.97
SYNE1-221ENST00000472563 DEFB125Q8N687 156 aa8.98□□□□□ -0.97
SYNE1-221ENST00000472563 SLC35G3Q8N808 338 aa8.98□□□□□ -0.97
SYNE1-221ENST00000472563 UBAC2Q8NBM4 344 aa8.98□□□□□ -0.97
SYNE1-221ENST00000472563 GLYATL2Q8WU03 294 aa8.98□□□□□ -0.97
SYNE1-221ENST00000472563 PDCD10Q9BUL8 212 aa8.98□□□□□ -0.97
SYNE1-221ENST00000472563 SCP2D1Q9UJQ7 156 aa8.98□□□□□ -0.97
SYNE1-221ENST00000472563 A0A0G2JRQ6 117 aa8.97□□□□□ -0.97
SYNE1-221ENST00000472563 CRYM-AS1A6NIL9 109 aa8.97□□□□□ -0.97
SYNE1-221ENST00000472563 C15orf62A8K5M9 175 aa8.97□□□□□ -0.97
SYNE1-221ENST00000472563 OR11H12B2RN74 326 aa8.97□□□□□ -0.97
SYNE1-221ENST00000472563 NUPL2O15504 423 aaKnown RBP8.97□□□□□ -0.97
SYNE1-221ENST00000472563 ETV6P41212 452 aa8.97□□□□□ -0.97
SYNE1-221ENST00000472563 RELQ04864 619 aaPredicted RBP8.97□□□□□ -0.97
SYNE1-221ENST00000472563 SPINK9Q5DT21 86 aa8.97□□□□□ -0.97
SYNE1-221ENST00000472563 Q6ZRM9 215 aa8.97□□□□□ -0.97
SYNE1-221ENST00000472563 OR52B4Q8NGK2 314 aa8.97□□□□□ -0.97
SYNE1-221ENST00000472563 RNASE11Q8TAA1 199 aaKnown RBP8.97□□□□□ -0.97
SYNE1-221ENST00000472563 RBPMSQ93062 196 aaKnown RBP8.97□□□□□ -0.97
SYNE1-221ENST00000472563 ZNF414Q96IQ9 312 aa8.97□□□□□ -0.97
SYNE1-221ENST00000472563 SCGB3A2Q96PL1 93 aa8.97□□□□□ -0.97
SYNE1-221ENST00000472563 CITED4Q96RK1 184 aa8.97□□□□□ -0.97
SYNE1-221ENST00000472563 C20orf24Q9BUV8 137 aa8.97□□□□□ -0.97
SYNE1-221ENST00000472563 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.97□□□□□ -0.97
SYNE1-221ENST00000472563 SELENOKQ9Y6D0 94 aa8.97□□□□□ -0.97
SYNE1-221ENST00000472563 CORTO00230 105 aa8.96□□□□□ -0.98
SYNE1-221ENST00000472563 TSPAN4O14817 238 aa8.96□□□□□ -0.98
SYNE1-221ENST00000472563 SCAF4O95104 1147 aaKnown RBP8.96□□□□□ -0.98
SYNE1-221ENST00000472563 NPBWR1P48145 328 aa8.96□□□□□ -0.98
SYNE1-221ENST00000472563 SUB1P53999 127 aaKnown RBP eCLIP8.96□□□□□ -0.98
SYNE1-221ENST00000472563 SPCS3P61009 180 aa8.96□□□□□ -0.98
SYNE1-221ENST00000472563 SELENOHQ8IZQ5 122 aaKnown RBP8.96□□□□□ -0.98
SYNE1-221ENST00000472563 OR52E5Q8NH55 327 aa8.96□□□□□ -0.98
SYNE1-221ENST00000472563 LHFPL5Q8TAF8 219 aa8.96□□□□□ -0.98
SYNE1-221ENST00000472563 MUC7Q8TAX7 377 aa8.96□□□□□ -0.98
SYNE1-221ENST00000472563 PINX1Q96BK5 328 aaKnown RBP8.96□□□□□ -0.98
SYNE1-221ENST00000472563 GALNT14Q96FL9 552 aa8.96□□□□□ -0.98
SYNE1-221ENST00000472563 SPAG8Q99932 426 aaPredicted RBP8.96□□□□□ -0.98
SYNE1-221ENST00000472563 WFDC10AQ9H1F0 79 aa8.96□□□□□ -0.98
SYNE1-221ENST00000472563 SRD5A3Q9H8P0 318 aa8.96□□□□□ -0.98
SYNE1-221ENST00000472563 ENY2Q9NPA8 101 aa8.96□□□□□ -0.98
SYNE1-221ENST00000472563 TMEM56-RWDD3S4R434 201 aa8.96□□□□□ -0.98
SYNE1-221ENST00000472563 RBMY1BA6NDE4 496 aaKnown RBP8.95□□□□□ -0.98
SYNE1-221ENST00000472563 RBMY1EA6NEQ0 496 aaKnown RBP8.95□□□□□ -0.98
SYNE1-221ENST00000472563 CCDC160A6NGH7 325 aa8.95□□□□□ -0.98
SYNE1-221ENST00000472563 ZNF701M0R085 212 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-221ENST00000472563 GNG7O60262 68 aa8.95□□□□□ -0.98
SYNE1-221ENST00000472563 IGHV3-48P01763 117 aa8.95□□□□□ -0.98
SYNE1-221ENST00000472563 RBMY1DP0C7P1 496 aaKnown RBP8.95□□□□□ -0.98
SYNE1-221ENST00000472563 RNASE2P10153 161 aaKnown RBP8.95□□□□□ -0.98
SYNE1-221ENST00000472563 HOXA1P49639 335 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-221ENST00000472563 AP3S2P59780 193 aa8.95□□□□□ -0.98
SYNE1-221ENST00000472563 BSXQ3C1V8 233 aa8.95□□□□□ -0.98
SYNE1-221ENST00000472563 TMEM268Q5VZI3 342 aa8.95□□□□□ -0.98
SYNE1-221ENST00000472563 LAMTOR1Q6IAA8 161 aa8.95□□□□□ -0.98
SYNE1-221ENST00000472563 DUSP18Q8NEJ0 188 aa8.95□□□□□ -0.98
SYNE1-221ENST00000472563 IL22RA2Q969J5 263 aa8.95□□□□□ -0.98
SYNE1-221ENST00000472563 TMEM230Q96A57 120 aa8.95□□□□□ -0.98
SYNE1-221ENST00000472563 GPR146Q96CH1 333 aa8.95□□□□□ -0.98
SYNE1-221ENST00000472563 OR10C1Q96KK4 312 aa8.95□□□□□ -0.98
SYNE1-221ENST00000472563 RBM38Q9H0Z9 239 aaKnown RBP8.95□□□□□ -0.98
SYNE1-221ENST00000472563 EDA2RQ9HAV5 297 aa8.95□□□□□ -0.98
SYNE1-221ENST00000472563 MCUBQ9NWR8 336 aa8.95□□□□□ -0.98
SYNE1-221ENST00000472563 CACFD1Q9UGQ2 172 aa8.95□□□□□ -0.98
SYNE1-221ENST00000472563 SMPXQ9UHP9 88 aa8.95□□□□□ -0.98
SYNE1-221ENST00000472563 KCNIP3Q9Y2W7 256 aa8.95□□□□□ -0.98
SYNE1-221ENST00000472563 DNAH7Q8WXX0 4024 aa8.95□□□□□ -0.98
SYNE1-221ENST00000472563 IGHV3OR16-8A0A075B7F1 116 aa8.94□□□□□ -0.98
SYNE1-221ENST00000472563 ZNF207O43670 478 aaKnown RBP8.94□□□□□ -0.98
SYNE1-221ENST00000472563 YIF1AO95070 293 aa8.94□□□□□ -0.98
SYNE1-221ENST00000472563 S100A5P33763 92 aa8.94□□□□□ -0.98
SYNE1-221ENST00000472563 FAUP35544 74 aaKnown RBP8.94□□□□□ -0.98
SYNE1-221ENST00000472563 KLF9Q13886 244 aaPredicted RBP8.94□□□□□ -0.98
SYNE1-221ENST00000472563 TMEM187Q14656 261 aa8.94□□□□□ -0.98
SYNE1-221ENST00000472563 PYDC2Q56P42 97 aa8.94□□□□□ -0.98
SYNE1-221ENST00000472563 TRIM63Q969Q1 353 aa8.94□□□□□ -0.98
SYNE1-221ENST00000472563 HIPK2Q9H2X6 1198 aa8.94□□□□□ -0.98
SYNE1-221ENST00000472563 CACNG5Q9UF02 275 aa8.94□□□□□ -0.98
SYNE1-221ENST00000472563 V9GYH0 126 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms