RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 PINX1Q96BK5 328 aaKnown RBP12.9□□□□□ -0.34
COL7A1-208ENST00000470076 ZNF486Q96H40 463 aaPredicted RBP12.9□□□□□ -0.34
COL7A1-208ENST00000470076 GINS3Q9BRX5 216 aa12.9□□□□□ -0.34
COL7A1-208ENST00000470076 FUNDC2Q9BWH2 189 aa12.9□□□□□ -0.34
COL7A1-208ENST00000470076 KLK5Q9Y337 293 aaPredicted RBP12.9□□□□□ -0.34
COL7A1-208ENST00000470076 IGHV3-49A0A0A0MS15 119 aa12.89□□□□□ -0.35
COL7A1-208ENST00000470076 IGHV3-48P01763 117 aa12.89□□□□□ -0.35
COL7A1-208ENST00000470076 NPBWR1P48145 328 aa12.89□□□□□ -0.35
COL7A1-208ENST00000470076 TFPI2P48307 235 aa12.89□□□□□ -0.35
COL7A1-208ENST00000470076 RND3P61587 244 aa12.89□□□□□ -0.35
COL7A1-208ENST00000470076 VBP1P61758 197 aa12.89□□□□□ -0.35
COL7A1-208ENST00000470076 PAFAH1B2P68402 229 aa12.89□□□□□ -0.35
COL7A1-208ENST00000470076 FAM90A2PQ658T7 463 aa12.89□□□□□ -0.35
COL7A1-208ENST00000470076 CSTL1Q9H114 145 aa12.89□□□□□ -0.35
COL7A1-208ENST00000470076 IGKV3-7A0A075B6H7 116 aa12.88□□□□□ -0.35
COL7A1-208ENST00000470076 MPTX1A8MV57 137 aa12.88□□□□□ -0.35
COL7A1-208ENST00000470076 M0QYG6 137 aa12.88□□□□□ -0.35
COL7A1-208ENST00000470076 HPGDSO60760 199 aa12.88□□□□□ -0.35
COL7A1-208ENST00000470076 SNCAP37840 140 aa12.88□□□□□ -0.35
COL7A1-208ENST00000470076 DUSP18Q8NEJ0 188 aa12.88□□□□□ -0.35
COL7A1-208ENST00000470076 GATAD1Q8WUU5 269 aa12.88□□□□□ -0.35
COL7A1-208ENST00000470076 IGHV3OR16-13A0A075B7E8 117 aa12.87□□□□□ -0.35
COL7A1-208ENST00000470076 IGHV3-74A0A0B4J1X5 117 aa12.87□□□□□ -0.35
COL7A1-208ENST00000470076 INS-IGF2F8WCM5 200 aa12.87□□□□□ -0.35
COL7A1-208ENST00000470076 ATG12O94817 140 aa12.87□□□□□ -0.35
COL7A1-208ENST00000470076 PGAM2P15259 253 aa12.87□□□□□ -0.35
COL7A1-208ENST00000470076 RORCP51449 518 aa12.87□□□□□ -0.35
COL7A1-208ENST00000470076 ZNF124Q15973 351 aa12.87□□□□□ -0.35
COL7A1-208ENST00000470076 RNASE10Q5GAN6 216 aaKnown RBP12.87□□□□□ -0.35
COL7A1-208ENST00000470076 TOMM20LQ6UXN7 152 aa12.87□□□□□ -0.35
COL7A1-208ENST00000470076 TCF24Q7RTU0 167 aa12.87□□□□□ -0.35
COL7A1-208ENST00000470076 LHFPL1Q86WI0 220 aa12.87□□□□□ -0.35
COL7A1-208ENST00000470076 ARRDC1Q8N5I2 433 aa12.87□□□□□ -0.35
COL7A1-208ENST00000470076 IGKV1-5P01602 117 aa12.86□□□□□ -0.35
COL7A1-208ENST00000470076 TBPP20226 339 aa12.86□□□□□ -0.35
COL7A1-208ENST00000470076 AKR1C2P52895 323 aa12.86□□□□□ -0.35
COL7A1-208ENST00000470076 PIGPP57054 158 aa12.86□□□□□ -0.35
COL7A1-208ENST00000470076 IZUMO4Q1ZYL8 232 aa12.86□□□□□ -0.35
COL7A1-208ENST00000470076 SPINK9Q5DT21 86 aa12.86□□□□□ -0.35
COL7A1-208ENST00000470076 MZT2AQ6P582 158 aa12.86□□□□□ -0.35
COL7A1-208ENST00000470076 ZNF600Q6ZNG1 722 aa12.86□□□□□ -0.35
COL7A1-208ENST00000470076 GBGT1Q8N5D6 347 aa12.86□□□□□ -0.35
COL7A1-208ENST00000470076 SLC35G3Q8N808 338 aa12.86□□□□□ -0.35
COL7A1-208ENST00000470076 VSIRQ9H7M9 311 aa12.86□□□□□ -0.35
COL7A1-208ENST00000470076 KLK11Q9UBX7 282 aa12.86□□□□□ -0.35
COL7A1-208ENST00000470076 A0A0B4J293 547 aa12.85□□□□□ -0.35
COL7A1-208ENST00000470076 FAM25AB3EWG3 89 aa12.85□□□□□ -0.35
COL7A1-208ENST00000470076 FAM25CB3EWG5 89 aa12.85□□□□□ -0.35
COL7A1-208ENST00000470076 FAM25GB3EWG6 89 aa12.85□□□□□ -0.35
COL7A1-208ENST00000470076 CORTO00230 105 aa12.85□□□□□ -0.35
COL7A1-208ENST00000470076 ST8SIA3O43173 380 aa12.85□□□□□ -0.35
COL7A1-208ENST00000470076 IFNA17P01571 189 aa12.85□□□□□ -0.35
COL7A1-208ENST00000470076 P0C879 139 aa12.85□□□□□ -0.35
COL7A1-208ENST00000470076 PI3P19957 117 aa12.85□□□□□ -0.35
COL7A1-208ENST00000470076 SUB1P53999 127 aaKnown RBP eCLIP12.85□□□□□ -0.35
COL7A1-208ENST00000470076 PVRIGQ6DKI7 326 aa12.85□□□□□ -0.35
COL7A1-208ENST00000470076 PHLDA1Q8WV24 401 aaPredicted RBP12.85□□□□□ -0.35
COL7A1-208ENST00000470076 ST8SIA2Q92186 375 aa12.85□□□□□ -0.35
COL7A1-208ENST00000470076 AP3S1Q92572 193 aa12.85□□□□□ -0.35
COL7A1-208ENST00000470076 TP53RKQ96S44 253 aa12.85□□□□□ -0.35
COL7A1-208ENST00000470076 RARRES2Q99969 163 aa12.85□□□□□ -0.35
COL7A1-208ENST00000470076 PDCD10Q9BUL8 212 aa12.85□□□□□ -0.35
COL7A1-208ENST00000470076 PUS1Q9Y606 427 aaKnown RBP eCLIP12.85□□□□□ -0.35
COL7A1-208ENST00000470076 TRAV2A0A0B4J234 112 aa12.84□□□□□ -0.35
COL7A1-208ENST00000470076 C3orf85A0A1B0GTC6 90 aa12.84□□□□□ -0.35
COL7A1-208ENST00000470076 DFFBO76075 338 aa12.84□□□□□ -0.35
COL7A1-208ENST00000470076 TMEM50AO95807 157 aa12.84□□□□□ -0.35
COL7A1-208ENST00000470076 CD3DP04234 171 aa12.84□□□□□ -0.35
COL7A1-208ENST00000470076 RNASE12Q5GAN4 147 aaKnown RBP12.84□□□□□ -0.35
COL7A1-208ENST00000470076 OR52I2Q8NH67 350 aa12.84□□□□□ -0.35
COL7A1-208ENST00000470076 MS4A6AQ9H2W1 248 aa12.84□□□□□ -0.35
COL7A1-208ENST00000470076 TMEM231Q9H6L2 316 aa12.84□□□□□ -0.35
COL7A1-208ENST00000470076 ZFAND3Q9H8U3 227 aa12.84□□□□□ -0.35
COL7A1-208ENST00000470076 MTFP1Q9UDX5 166 aa12.84□□□□□ -0.35
COL7A1-208ENST00000470076 DNASE2O00115 360 aaPredicted RBP12.83□□□□□ -0.36
COL7A1-208ENST00000470076 APOHP02749 345 aaPredicted RBP12.83□□□□□ -0.36
COL7A1-208ENST00000470076 CCDC71LQ8N9Z2 235 aa12.83□□□□□ -0.36
COL7A1-208ENST00000470076 ZFAND1Q8TCF1 268 aa12.83□□□□□ -0.36
COL7A1-208ENST00000470076 C15orf40Q8WUR7 153 aa12.83□□□□□ -0.36
COL7A1-208ENST00000470076 MFFQ9GZY8 342 aa12.83□□□□□ -0.36
COL7A1-208ENST00000470076 C11orf68Q9H3H3 251 aaKnown RBP12.83□□□□□ -0.36
COL7A1-208ENST00000470076 COPZ2Q9P299 210 aa12.83□□□□□ -0.36
COL7A1-208ENST00000470076 KMT2AQ03164 3969 aa12.83□□□□□ -0.36
COL7A1-208ENST00000470076 B3GALNT1O75752 331 aa12.82□□□□□ -0.36
COL7A1-208ENST00000470076 RNASE2P10153 161 aaKnown RBP12.82□□□□□ -0.36
COL7A1-208ENST00000470076 ZNF182P17025 639 aaPredicted RBP12.82□□□□□ -0.36
COL7A1-208ENST00000470076 ETV6P41212 452 aa12.82□□□□□ -0.36
COL7A1-208ENST00000470076 HOXA1P49639 335 aaPredicted RBP12.82□□□□□ -0.36
COL7A1-208ENST00000470076 PPP5CP53041 499 aa12.82□□□□□ -0.36
COL7A1-208ENST00000470076 RPL11P62913 178 aaKnown RBP12.82□□□□□ -0.36
COL7A1-208ENST00000470076 TRIM16LQ309B1 348 aa12.82□□□□□ -0.36
COL7A1-208ENST00000470076 LILRB2Q8N423 598 aa12.82□□□□□ -0.36
COL7A1-208ENST00000470076 OR11H2Q8NH07 326 aa12.82□□□□□ -0.36
COL7A1-208ENST00000470076 TERB2Q8NHR7 220 aa12.82□□□□□ -0.36
COL7A1-208ENST00000470076 RRNAD1Q96FB5 475 aaKnown RBP12.82□□□□□ -0.36
COL7A1-208ENST00000470076 ENY2Q9NPA8 101 aa12.82□□□□□ -0.36
COL7A1-208ENST00000470076 EXTL2Q9UBQ6 330 aa12.82□□□□□ -0.36
COL7A1-208ENST00000470076 FRAS1Q86XX4 4008 aa12.81□□□□□ -0.36
COL7A1-208ENST00000470076 IGHV3-66A0A0C4DH42 116 aa12.81□□□□□ -0.36
COL7A1-208ENST00000470076 A0A1B0GU03 582 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms