RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 NECAP1Q8NC96 275 aa9.14□□□□□ -0.95
SQSTM1-206ENST00000466342 OR1N2Q8NGR9 330 aa9.14□□□□□ -0.95
SQSTM1-206ENST00000466342 USMG5Q96IX5 58 aa9.14□□□□□ -0.95
SQSTM1-206ENST00000466342 OR5B12Q96R08 314 aa9.14□□□□□ -0.95
SQSTM1-206ENST00000466342 PLEKHA3Q9HB20 300 aa9.14□□□□□ -0.95
SQSTM1-206ENST00000466342 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.14□□□□□ -0.95
SQSTM1-206ENST00000466342 IGLV11-55A0A075B6I3 123 aa9.13□□□□□ -0.95
SQSTM1-206ENST00000466342 SEC14L6B5MCN3 397 aa9.13□□□□□ -0.95
SQSTM1-206ENST00000466342 INS-IGF2F8WCM5 200 aa9.13□□□□□ -0.95
SQSTM1-206ENST00000466342 OR2J3O76001 311 aa9.13□□□□□ -0.95
SQSTM1-206ENST00000466342 IGHV3-11P01762 117 aa9.13□□□□□ -0.95
SQSTM1-206ENST00000466342 H2AFB2P0C5Z0 115 aa9.13□□□□□ -0.95
SQSTM1-206ENST00000466342 HIST1H1BP16401 226 aaKnown RBP9.13□□□□□ -0.95
SQSTM1-206ENST00000466342 SMCO1Q147U7 214 aa9.13□□□□□ -0.95
SQSTM1-206ENST00000466342 DUSP18Q8NEJ0 188 aa9.13□□□□□ -0.95
SQSTM1-206ENST00000466342 OR52E5Q8NH55 327 aa9.13□□□□□ -0.95
SQSTM1-206ENST00000466342 COQ8AQ8NI60 647 aa9.13□□□□□ -0.95
SQSTM1-206ENST00000466342 FANCD2OSQ96PS1 177 aa9.13□□□□□ -0.95
SQSTM1-206ENST00000466342 CACFD1Q9UGQ2 172 aa9.13□□□□□ -0.95
SQSTM1-206ENST00000466342 TMED3Q9Y3Q3 217 aa9.13□□□□□ -0.95
SQSTM1-206ENST00000466342 ALMS1Q8TCU4 4167 aa9.12□□□□□ -0.95
SQSTM1-206ENST00000466342 A0A1B0GU03 582 aa9.12□□□□□ -0.95
SQSTM1-206ENST00000466342 CYB5BO43169 146 aa9.12□□□□□ -0.95
SQSTM1-206ENST00000466342 SPCS3P61009 180 aa9.12□□□□□ -0.95
SQSTM1-206ENST00000466342 ERHP84090 104 aaKnown RBP9.12□□□□□ -0.95
SQSTM1-206ENST00000466342 ATP5G2Q06055 141 aa9.12□□□□□ -0.95
SQSTM1-206ENST00000466342 C15orf32Q32M92 178 aa9.12□□□□□ -0.95
SQSTM1-206ENST00000466342 SPINK9Q5DT21 86 aa9.12□□□□□ -0.95
SQSTM1-206ENST00000466342 ZNF343Q6P1L6 599 aa9.12□□□□□ -0.95
SQSTM1-206ENST00000466342 NRARPQ7Z6K4 114 aa9.12□□□□□ -0.95
SQSTM1-206ENST00000466342 OR2C3Q8N628 320 aa9.12□□□□□ -0.95
SQSTM1-206ENST00000466342 ZNF114Q8NC26 417 aa9.12□□□□□ -0.95
SQSTM1-206ENST00000466342 OR52B4Q8NGK2 314 aa9.12□□□□□ -0.95
SQSTM1-206ENST00000466342 OR1L6Q8NGR2 347 aa9.12□□□□□ -0.95
SQSTM1-206ENST00000466342 FBXL7Q9UJT9 491 aa9.12□□□□□ -0.95
SQSTM1-206ENST00000466342 DMRT1Q9Y5R6 373 aa9.12□□□□□ -0.95
SQSTM1-206ENST00000466342 F11RQ9Y624 299 aaKnown RBP9.12□□□□□ -0.95
SQSTM1-206ENST00000466342 NDUFB8O95169 186 aa9.11□□□□□ -0.95
SQSTM1-206ENST00000466342 HOXB5P09067 269 aa9.11□□□□□ -0.95
SQSTM1-206ENST00000466342 FRMD6-AS1P0C7T7 363 aa9.11□□□□□ -0.95
SQSTM1-206ENST00000466342 SLC25A6P12236 298 aa9.11□□□□□ -0.95
SQSTM1-206ENST00000466342 HOXA1P49639 335 aaPredicted RBP9.11□□□□□ -0.95
SQSTM1-206ENST00000466342 EXOSC2Q13868 293 aaKnown RBP9.11□□□□□ -0.95
SQSTM1-206ENST00000466342 PLET1Q6UQ28 207 aa9.11□□□□□ -0.95
SQSTM1-206ENST00000466342 OR1S1Q8NH92 325 aa9.11□□□□□ -0.95
SQSTM1-206ENST00000466342 MITD1Q8WV92 249 aa9.11□□□□□ -0.95
SQSTM1-206ENST00000466342 SEC22CQ9BRL7 303 aa9.11□□□□□ -0.95
SQSTM1-206ENST00000466342 ENY2Q9NPA8 101 aa9.11□□□□□ -0.95
SQSTM1-206ENST00000466342 THYN1Q9P016 225 aa9.11□□□□□ -0.95
SQSTM1-206ENST00000466342 IGHV4OR15-8A0A075B7B6 117 aa9.1□□□□□ -0.95
SQSTM1-206ENST00000466342 A0A087WW49 117 aa9.1□□□□□ -0.95
SQSTM1-206ENST00000466342 LINC01619G3V211 115 aa9.1□□□□□ -0.95
SQSTM1-206ENST00000466342 OVOL1O14753 267 aa9.1□□□□□ -0.95
SQSTM1-206ENST00000466342 PITX3O75364 302 aa9.1□□□□□ -0.95
SQSTM1-206ENST00000466342 NXPH3O95157 252 aa9.1□□□□□ -0.95
SQSTM1-206ENST00000466342 LY86O95711 162 aa9.1□□□□□ -0.95
SQSTM1-206ENST00000466342 HSPB1P04792 205 aaKnown RBP9.1□□□□□ -0.95
SQSTM1-206ENST00000466342 MFAP2P55001 183 aa9.1□□□□□ -0.95
SQSTM1-206ENST00000466342 TNFRSF9Q07011 255 aa9.1□□□□□ -0.95
SQSTM1-206ENST00000466342 FAM209BQ5JX69 171 aa9.1□□□□□ -0.95
SQSTM1-206ENST00000466342 GGNBP1Q5YKI7 109 aa9.1□□□□□ -0.95
SQSTM1-206ENST00000466342 SLC25A24Q6NUK1 477 aa9.1□□□□□ -0.95
SQSTM1-206ENST00000466342 OR1P1Q8NH06 330 aa9.1□□□□□ -0.95
SQSTM1-206ENST00000466342 ZNF431Q8TF32 576 aaPredicted RBP9.1□□□□□ -0.95
SQSTM1-206ENST00000466342 DCUN1D4Q92564 292 aa9.1□□□□□ -0.95
SQSTM1-206ENST00000466342 CXorf58Q96LI9 332 aa9.1□□□□□ -0.95
SQSTM1-206ENST00000466342 TM2D3Q9BRN9 247 aa9.1□□□□□ -0.95
SQSTM1-206ENST00000466342 HSPB7Q9UBY9 170 aa9.1□□□□□ -0.95
SQSTM1-206ENST00000466342 HECTD4Q9Y4D8 3996 aa9.09□□□□□ -0.95
SQSTM1-206ENST00000466342 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.09□□□□□ -0.95
SQSTM1-206ENST00000466342 ANKRD34BA5PLL1 514 aa9.09□□□□□ -0.95
SQSTM1-206ENST00000466342 MFSD2BA6NFX1 497 aa9.09□□□□□ -0.95
SQSTM1-206ENST00000466342 CEBPZOSA8MTT3 80 aa9.09□□□□□ -0.95
SQSTM1-206ENST00000466342 ADAP1O75689 374 aa9.09□□□□□ -0.95
SQSTM1-206ENST00000466342 IFNA21P01568 189 aa9.09□□□□□ -0.95
SQSTM1-206ENST00000466342 IL5P05113 134 aa9.09□□□□□ -0.95
SQSTM1-206ENST00000466342 SNCAP37840 140 aa9.09□□□□□ -0.95
SQSTM1-206ENST00000466342 DLX4Q92988 240 aaPredicted RBP9.09□□□□□ -0.95
SQSTM1-206ENST00000466342 EEF1AKMT3Q96AZ1 226 aa9.09□□□□□ -0.95
SQSTM1-206ENST00000466342 CCDC140Q96MF4 163 aa9.09□□□□□ -0.95
SQSTM1-206ENST00000466342 RANGRFQ9HD47 186 aaPredicted RBP9.09□□□□□ -0.95
SQSTM1-206ENST00000466342 PEF1Q9UBV8 284 aaKnown RBP9.09□□□□□ -0.95
SQSTM1-206ENST00000466342 TRBV7-1A0A0A6YYK4 115 aa9.08□□□□□ -0.96
SQSTM1-206ENST00000466342 MPTX1A8MV57 137 aa9.08□□□□□ -0.96
SQSTM1-206ENST00000466342 FAM90A26D6RGX4 464 aa9.08□□□□□ -0.96
SQSTM1-206ENST00000466342 INMT-MINDY4F8WBC2 141 aa9.08□□□□□ -0.96
SQSTM1-206ENST00000466342 PRAF2O60831 178 aa9.08□□□□□ -0.96
SQSTM1-206ENST00000466342 PTTG1O95997 202 aa9.08□□□□□ -0.96
SQSTM1-206ENST00000466342 TRBV12-3P01733 135 aa9.08□□□□□ -0.96
SQSTM1-206ENST00000466342 RNASE2P10153 161 aaKnown RBP9.08□□□□□ -0.96
SQSTM1-206ENST00000466342 ZP3P21754 424 aa9.08□□□□□ -0.96
SQSTM1-206ENST00000466342 SUB1P53999 127 aaKnown RBP eCLIP9.08□□□□□ -0.96
SQSTM1-206ENST00000466342 BSXQ3C1V8 233 aa9.08□□□□□ -0.96
SQSTM1-206ENST00000466342 VN1R17PQ8TDU5 208 aa9.08□□□□□ -0.96
SQSTM1-206ENST00000466342 MARVELD1Q9BSK0 173 aa9.08□□□□□ -0.96
SQSTM1-206ENST00000466342 RBKSQ9H477 322 aa9.08□□□□□ -0.96
SQSTM1-206ENST00000466342 GPN1Q9HCN4 374 aaPredicted RBP9.08□□□□□ -0.96
SQSTM1-206ENST00000466342 HEYLQ9NQ87 328 aaPredicted RBP9.08□□□□□ -0.96
SQSTM1-206ENST00000466342 S4R3C0 116 aa9.08□□□□□ -0.96
SQSTM1-206ENST00000466342 K7EIM0 57 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms