RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 PAFAH1B2P68402 229 aa16.52■□□□□ 0.24
USP4-208ENST00000464168 UBE2NLQ5JXB2 153 aa16.52■□□□□ 0.24
USP4-208ENST00000464168 TMEM69Q5SWH9 247 aa16.52■□□□□ 0.24
USP4-208ENST00000464168 GNG7O60262 68 aa16.51■□□□□ 0.23
USP4-208ENST00000464168 IGKV1-39P01597 117 aa16.51■□□□□ 0.23
USP4-208ENST00000464168 APOHP02749 345 aaPredicted RBP16.51■□□□□ 0.23
USP4-208ENST00000464168 IGKV1D-39P04432 117 aa16.51■□□□□ 0.23
USP4-208ENST00000464168 CD5P06127 495 aa16.51■□□□□ 0.23
USP4-208ENST00000464168 HRH1P35367 487 aa16.51■□□□□ 0.23
USP4-208ENST00000464168 TGFBR1P36897 503 aa16.51■□□□□ 0.23
USP4-208ENST00000464168 PRCDQ00LT1 54 aa16.51■□□□□ 0.23
USP4-208ENST00000464168 TOMM20LQ6UXN7 152 aa16.51■□□□□ 0.23
USP4-208ENST00000464168 OR4A16Q8NH70 328 aa16.51■□□□□ 0.23
USP4-208ENST00000464168 C2CD4CQ8TF44 421 aa16.51■□□□□ 0.23
USP4-208ENST00000464168 ST8SIA2Q92186 375 aa16.51■□□□□ 0.23
USP4-208ENST00000464168 PINX1Q96BK5 328 aaKnown RBP16.51■□□□□ 0.23
USP4-208ENST00000464168 VSIRQ9H7M9 311 aa16.51■□□□□ 0.23
USP4-208ENST00000464168 KIAA1109Q2LD37 5005 aa16.5■□□□□ 0.23
USP4-208ENST00000464168 HLA-DMAP28067 261 aa16.5■□□□□ 0.23
USP4-208ENST00000464168 PRSS3P35030 304 aa16.5■□□□□ 0.23
USP4-208ENST00000464168 TMEM187Q14656 261 aa16.5■□□□□ 0.23
USP4-208ENST00000464168 NEDD8Q15843 81 aa16.5■□□□□ 0.23
USP4-208ENST00000464168 H2BFWTQ7Z2G1 175 aa16.5■□□□□ 0.23
USP4-208ENST00000464168 TBC1D26Q86UD7 250 aa16.5■□□□□ 0.23
USP4-208ENST00000464168 CROCCP3Q8IVE0 287 aa16.5■□□□□ 0.23
USP4-208ENST00000464168 SAMD12Q8N8I0 201 aa16.5■□□□□ 0.23
USP4-208ENST00000464168 GINS3Q9BRX5 216 aa16.5■□□□□ 0.23
USP4-208ENST00000464168 MS4A6AQ9H2W1 248 aa16.5■□□□□ 0.23
USP4-208ENST00000464168 Q9H521 79 aa16.5■□□□□ 0.23
USP4-208ENST00000464168 DFFBO76075 338 aa16.49■□□□□ 0.23
USP4-208ENST00000464168 DEFB131AP59861 70 aa16.49■□□□□ 0.23
USP4-208ENST00000464168 HSPE1P61604 102 aaKnown RBP16.49■□□□□ 0.23
USP4-208ENST00000464168 LEMD1Q68G75 181 aa16.49■□□□□ 0.23
USP4-208ENST00000464168 IGHV3-66A0A0C4DH42 116 aa16.48■□□□□ 0.23
USP4-208ENST00000464168 DNASE2O00115 360 aaPredicted RBP16.48■□□□□ 0.23
USP4-208ENST00000464168 ST8SIA3O43173 380 aa16.48■□□□□ 0.23
USP4-208ENST00000464168 RPS19P39019 145 aaKnown RBP16.48■□□□□ 0.23
USP4-208ENST00000464168 TCTAP57738 103 aa16.48■□□□□ 0.23
USP4-208ENST00000464168 LPCAT3Q6P1A2 487 aa16.48■□□□□ 0.23
USP4-208ENST00000464168 FAM24BQ8N5W8 94 aa16.48■□□□□ 0.23
USP4-208ENST00000464168 EIF4EP06730 217 aaKnown RBP16.47■□□□□ 0.23
USP4-208ENST00000464168 S100GP29377 79 aa16.47■□□□□ 0.23
USP4-208ENST00000464168 TSPAN5P62079 268 aa16.47■□□□□ 0.23
USP4-208ENST00000464168 ERHP84090 104 aaKnown RBP16.47■□□□□ 0.23
USP4-208ENST00000464168 DUSP18Q8NEJ0 188 aa16.47■□□□□ 0.23
USP4-208ENST00000464168 MRGPRFQ96AM1 343 aa16.47■□□□□ 0.23
USP4-208ENST00000464168 ZFAND3Q9H8U3 227 aa16.47■□□□□ 0.23
USP4-208ENST00000464168 APLNQ9ULZ1 77 aa16.47■□□□□ 0.23
USP4-208ENST00000464168 PUS1Q9Y606 427 aaKnown RBP eCLIP16.47■□□□□ 0.23
USP4-208ENST00000464168 PCLOQ9Y6V0 5065 aa16.47■□□□□ 0.23
USP4-208ENST00000464168 TRAV2A0A0B4J234 112 aa16.46■□□□□ 0.23
USP4-208ENST00000464168 GIG44P09565 113 aaPredicted RBP16.46■□□□□ 0.23
USP4-208ENST00000464168 NPBWR1P48145 328 aa16.46■□□□□ 0.23
USP4-208ENST00000464168 Q8NAQ8 132 aa16.46■□□□□ 0.23
USP4-208ENST00000464168 GPX8Q8TED1 209 aa16.46■□□□□ 0.23
USP4-208ENST00000464168 A0A1B0GU03 582 aa16.45■□□□□ 0.22
USP4-208ENST00000464168 IGLL5B9A064 214 aa16.45■□□□□ 0.22
USP4-208ENST00000464168 ATP6V1G2O95670 118 aa16.45■□□□□ 0.22
USP4-208ENST00000464168 UCP3P55916 312 aa16.45■□□□□ 0.22
USP4-208ENST00000464168 RPL11P62913 178 aaKnown RBP16.45■□□□□ 0.22
USP4-208ENST00000464168 IZUMO4Q1ZYL8 232 aa16.45■□□□□ 0.22
USP4-208ENST00000464168 SPINK9Q5DT21 86 aa16.45■□□□□ 0.22
USP4-208ENST00000464168 ZNF600Q6ZNG1 722 aa16.45■□□□□ 0.22
USP4-208ENST00000464168 TMEM50AO95807 157 aa16.44■□□□□ 0.22
USP4-208ENST00000464168 RBMY1A1P0DJD3 496 aaKnown RBP16.44■□□□□ 0.22
USP4-208ENST00000464168 RBMY1CP0DJD4 496 aa16.44■□□□□ 0.22
USP4-208ENST00000464168 RBMY1FQ15415 496 aaKnown RBP16.44■□□□□ 0.22
USP4-208ENST00000464168 STHQ8IWL8 128 aa16.44■□□□□ 0.22
USP4-208ENST00000464168 HRH4Q9H3N8 390 aa16.44■□□□□ 0.22
USP4-208ENST00000464168 C11orf94C9JXX5 98 aa16.43■□□□□ 0.22
USP4-208ENST00000464168 PVRIGQ6DKI7 326 aa16.43■□□□□ 0.22
USP4-208ENST00000464168 RABAC1Q9UI14 185 aa16.43■□□□□ 0.22
USP4-208ENST00000464168 IGHV4-28A0A0C4DH34 117 aa16.42■□□□□ 0.22
USP4-208ENST00000464168 SNCAP37840 140 aa16.42■□□□□ 0.22
USP4-208ENST00000464168 AGRNO00468 2067 aa16.42■□□□□ 0.22
USP4-208ENST00000464168 A0A0B4J293 547 aa16.41■□□□□ 0.22
USP4-208ENST00000464168 INS-IGF2F8WCM5 200 aa16.41■□□□□ 0.22
USP4-208ENST00000464168 IGKV1-5P01602 117 aa16.41■□□□□ 0.22
USP4-208ENST00000464168 P0C879 139 aa16.41■□□□□ 0.22
USP4-208ENST00000464168 NPPCP23582 126 aa16.41■□□□□ 0.22
USP4-208ENST00000464168 LSM3P62310 102 aaKnown RBP16.41■□□□□ 0.22
USP4-208ENST00000464168 KCTD21Q4G0X4 260 aa16.41■□□□□ 0.22
USP4-208ENST00000464168 TRPT1Q86TN4 253 aaKnown RBP16.41■□□□□ 0.22
USP4-208ENST00000464168 TMEM231Q9H6L2 316 aa16.41■□□□□ 0.22
USP4-208ENST00000464168 MRPL36Q9P0J6 103 aaKnown RBP16.41■□□□□ 0.22
USP4-208ENST00000464168 FAT2Q9NYQ8 4349 aa16.41■□□□□ 0.22
USP4-208ENST00000464168 K7EQG2 157 aa16.4■□□□□ 0.22
USP4-208ENST00000464168 HLA-DMBP28068 263 aa16.4■□□□□ 0.22
USP4-208ENST00000464168 YIPF6Q96EC8 236 aa16.4■□□□□ 0.22
USP4-208ENST00000464168 SCPEP1Q9HB40 452 aa16.4■□□□□ 0.22
USP4-208ENST00000464168 RNASE2P10153 161 aaKnown RBP16.39■□□□□ 0.21
USP4-208ENST00000464168 TMEM41BQ5BJD5 291 aa16.39■□□□□ 0.21
USP4-208ENST00000464168 SNX29P2Q8IUI4 249 aa16.39■□□□□ 0.21
USP4-208ENST00000464168 SLC35G3Q8N808 338 aa16.39■□□□□ 0.21
USP4-208ENST00000464168 STXBP6Q8NFX7 210 aa16.39■□□□□ 0.21
USP4-208ENST00000464168 GRAMD2BQ96HH9 432 aa16.39■□□□□ 0.21
USP4-208ENST00000464168 DNAH2Q9P225 4427 aa16.39■□□□□ 0.21
USP4-208ENST00000464168 A0A1W2PS18 150 aa16.38■□□□□ 0.21
USP4-208ENST00000464168 KNCNA6PVL3 124 aa16.38■□□□□ 0.21
USP4-208ENST00000464168 ZNF705EA8MWA4 302 aaPredicted RBP16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms