RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 CD55P08174 381 aa15.91■□□□□ 0.14
CCDC88B-204ENST00000463837 NMSQ5H8A3 153 aa15.91■□□□□ 0.14
CCDC88B-204ENST00000463837 RNFT1Q5M7Z0 435 aa15.91■□□□□ 0.14
CCDC88B-204ENST00000463837 OCC1Q8TAD7 63 aa15.91■□□□□ 0.14
CCDC88B-204ENST00000463837 RAXQ9Y2V3 346 aa15.91■□□□□ 0.14
CCDC88B-204ENST00000463837 GPR183P32249 361 aa15.91■□□□□ 0.14
CCDC88B-204ENST00000463837 DLX6P56179 175 aa15.91■□□□□ 0.14
CCDC88B-204ENST00000463837 ATP5L2Q7Z4Y8 100 aa15.91■□□□□ 0.14
CCDC88B-204ENST00000463837 PGPEP1LA6NFU8 196 aa15.9■□□□□ 0.14
CCDC88B-204ENST00000463837 ORMDL3Q8N138 153 aa15.9■□□□□ 0.14
CCDC88B-204ENST00000463837 CHCHD1Q96BP2 118 aaKnown RBP15.9■□□□□ 0.14
CCDC88B-204ENST00000463837 DCTN5Q9BTE1 182 aa15.9■□□□□ 0.14
CCDC88B-204ENST00000463837 ZNF318Q5VUA4 2279 aa15.9■□□□□ 0.14
CCDC88B-204ENST00000463837 GVINP1Q7Z2Y8 2422 aa15.9■□□□□ 0.14
CCDC88B-204ENST00000463837 NUTF2P61970 127 aaKnown RBP15.9■□□□□ 0.14
CCDC88B-204ENST00000463837 VCX2Q9H322 139 aa15.9■□□□□ 0.14
CCDC88B-204ENST00000463837 VSIRQ9H7M9 311 aa15.9■□□□□ 0.14
CCDC88B-204ENST00000463837 LINC00312Q9Y6C7 94 aa15.9■□□□□ 0.14
CCDC88B-204ENST00000463837 ADCYAP1P18509 176 aa15.9■□□□□ 0.14
CCDC88B-204ENST00000463837 C5orf30Q96GV9 206 aa15.9■□□□□ 0.14
CCDC88B-204ENST00000463837 IGHV3-35A0A0C4DH35 117 aa15.89■□□□□ 0.13
CCDC88B-204ENST00000463837 IGKV1-12A0A0C4DH73 117 aa15.89■□□□□ 0.13
CCDC88B-204ENST00000463837 MUC21A0A0G2JKD1 596 aa15.89■□□□□ 0.13
CCDC88B-204ENST00000463837 MUC21A0A140T8X8 626 aa15.89■□□□□ 0.13
CCDC88B-204ENST00000463837 IGKV1D-12P01611 117 aa15.89■□□□□ 0.13
CCDC88B-204ENST00000463837 MUC21Q5SSG8 566 aa15.89■□□□□ 0.13
CCDC88B-204ENST00000463837 OR4X2Q8NGF9 303 aa15.89■□□□□ 0.13
CCDC88B-204ENST00000463837 SIGLEC12Q96PQ1 595 aa15.89■□□□□ 0.13
CCDC88B-204ENST00000463837 KIR2DL4Q99706 377 aa15.89■□□□□ 0.13
CCDC88B-204ENST00000463837 C2orf88Q9BSF0 95 aa15.89■□□□□ 0.13
CCDC88B-204ENST00000463837 FOXH1O75593 365 aa15.89■□□□□ 0.13
CCDC88B-204ENST00000463837 TIMP3P35625 211 aa15.89■□□□□ 0.13
CCDC88B-204ENST00000463837 ACTL10Q5JWF8 245 aa15.89■□□□□ 0.13
CCDC88B-204ENST00000463837 SPCS1Q9Y6A9 102 aa15.89■□□□□ 0.13
CCDC88B-204ENST00000463837 SCN8AQ9UQD0 1980 aa15.89■□□□□ 0.13
CCDC88B-204ENST00000463837 C9JCJ5 164 aa15.89■□□□□ 0.13
CCDC88B-204ENST00000463837 Q9H3A6 140 aa15.89■□□□□ 0.13
CCDC88B-204ENST00000463837 IGKV3D-15A0A087WSY6 115 aa15.89■□□□□ 0.13
CCDC88B-204ENST00000463837 IGKV3-15P01624 115 aa15.89■□□□□ 0.13
CCDC88B-204ENST00000463837 ATP1A1-AS1Q5TC04 95 aa15.89■□□□□ 0.13
CCDC88B-204ENST00000463837 FDCSPQ8NFU4 85 aa15.89■□□□□ 0.13
CCDC88B-204ENST00000463837 RASL11AQ6T310 242 aa15.88■□□□□ 0.13
CCDC88B-204ENST00000463837 NABP1Q96AH0 204 aa15.88■□□□□ 0.13
CCDC88B-204ENST00000463837 EEF1AKMT3Q96AZ1 226 aa15.88■□□□□ 0.13
CCDC88B-204ENST00000463837 FOXI3A8MTJ6 420 aaPredicted RBP15.88■□□□□ 0.13
CCDC88B-204ENST00000463837 CELA3AP09093 270 aa15.88■□□□□ 0.13
CCDC88B-204ENST00000463837 STAG3L3P0CL85 134 aa15.88■□□□□ 0.13
CCDC88B-204ENST00000463837 EFNB3Q15768 340 aa15.88■□□□□ 0.13
CCDC88B-204ENST00000463837 FBLN7Q53RD9 439 aa15.88■□□□□ 0.13
CCDC88B-204ENST00000463837 BEX4Q9NWD9 120 aaPredicted RBP15.88■□□□□ 0.13
CCDC88B-204ENST00000463837 LY96Q9Y6Y9 160 aa15.88■□□□□ 0.13
CCDC88B-204ENST00000463837 IGHV2OR16-5A0A0B4J2B6 119 aa15.88■□□□□ 0.13
CCDC88B-204ENST00000463837 IGHV1-69-2A0A0G2JMI3 117 aa15.88■□□□□ 0.13
CCDC88B-204ENST00000463837 PYY3Q5JQD4 70 aa15.88■□□□□ 0.13
CCDC88B-204ENST00000463837 RTN4RL2Q86UN3 420 aa15.88■□□□□ 0.13
CCDC88B-204ENST00000463837 ST20Q9HBF5 79 aa15.88■□□□□ 0.13
CCDC88B-204ENST00000463837 NPPCP23582 126 aa15.88■□□□□ 0.13
CCDC88B-204ENST00000463837 PRSS8Q16651 343 aa15.88■□□□□ 0.13
CCDC88B-204ENST00000463837 PNKDQ8N490 385 aa15.88■□□□□ 0.13
CCDC88B-204ENST00000463837 A0A0G2JMM0 328 aa15.87■□□□□ 0.13
CCDC88B-204ENST00000463837 A0A1W2PPB8 328 aa15.87■□□□□ 0.13
CCDC88B-204ENST00000463837 A0A1W2PRS3 328 aa15.87■□□□□ 0.13
CCDC88B-204ENST00000463837 KIR3DP1A8MWS1 328 aa15.87■□□□□ 0.13
CCDC88B-204ENST00000463837 RAMP3O60896 148 aa15.87■□□□□ 0.13
CCDC88B-204ENST00000463837 MORN2Q502X0 79 aa15.87■□□□□ 0.13
CCDC88B-204ENST00000463837 Q6ZS49 121 aa15.87■□□□□ 0.13
CCDC88B-204ENST00000463837 SSBP4Q9BWG4 385 aaPredicted RBP15.87■□□□□ 0.13
CCDC88B-204ENST00000463837 JKAMPQ9P055 326 aa15.87■□□□□ 0.13
CCDC88B-204ENST00000463837 LHX2P50458 406 aa15.87■□□□□ 0.13
CCDC88B-204ENST00000463837 C9orf172C9J069 976 aa15.87■□□□□ 0.13
CCDC88B-204ENST00000463837 ATP5G2Q06055 141 aa15.87■□□□□ 0.13
CCDC88B-204ENST00000463837 LOC105371242A0A075B767 164 aa15.87■□□□□ 0.13
CCDC88B-204ENST00000463837 TRBV6-6A0A0A6YYG2 114 aa15.87■□□□□ 0.13
CCDC88B-204ENST00000463837 A6NNC1 897 aa15.87■□□□□ 0.13
CCDC88B-204ENST00000463837 UMODP07911 640 aa15.87■□□□□ 0.13
CCDC88B-204ENST00000463837 EMP1P54849 157 aa15.87■□□□□ 0.13
CCDC88B-204ENST00000463837 EPDR1Q9UM22 224 aa15.87■□□□□ 0.13
CCDC88B-204ENST00000463837 A0A1B0GWB2 263 aa15.86■□□□□ 0.13
CCDC88B-204ENST00000463837 CIRBPQ14011 172 aaKnown RBP15.86■□□□□ 0.13
CCDC88B-204ENST00000463837 SCGB1A1P11684 91 aa15.86■□□□□ 0.13
CCDC88B-204ENST00000463837 PRCDQ00LT1 54 aa15.86■□□□□ 0.13
CCDC88B-204ENST00000463837 FAM106AQ4KMX7 169 aa15.86■□□□□ 0.13
CCDC88B-204ENST00000463837 SLX1AQ9BQ83 275 aa15.86■□□□□ 0.13
CCDC88B-204ENST00000463837 MRPL16Q9NX20 251 aaKnown RBP15.86■□□□□ 0.13
CCDC88B-204ENST00000463837 DUTP33316 252 aaKnown RBP15.86■□□□□ 0.13
CCDC88B-204ENST00000463837 TMEM14EPQ6UXP3 125 aa15.86■□□□□ 0.13
CCDC88B-204ENST00000463837 GPX1P07203 203 aa15.86■□□□□ 0.13
CCDC88B-204ENST00000463837 WDR82Q6UXN9 313 aa15.86■□□□□ 0.13
CCDC88B-204ENST00000463837 TSKUQ8WUA8 353 aa15.86■□□□□ 0.13
CCDC88B-204ENST00000463837 PNRC2Q9NPJ4 139 aaKnown RBP15.86■□□□□ 0.13
CCDC88B-204ENST00000463837 SAA2-SAA4A0A096LPE2 208 aa15.85■□□□□ 0.13
CCDC88B-204ENST00000463837 CLPSP04118 112 aa15.85■□□□□ 0.13
CCDC88B-204ENST00000463837 LINC00614P0C842 121 aa15.85■□□□□ 0.13
CCDC88B-204ENST00000463837 SAA2P0DJI9 122 aaPredicted RBP15.85■□□□□ 0.13
CCDC88B-204ENST00000463837 IGHV1-2P23083 117 aa15.85■□□□□ 0.13
CCDC88B-204ENST00000463837 MRPL20Q9BYC9 149 aaKnown RBP15.85■□□□□ 0.13
CCDC88B-204ENST00000463837 HEATR5BQ9P2D3 2071 aa15.85■□□□□ 0.13
CCDC88B-204ENST00000463837 H3BUT2 72 aa15.85■□□□□ 0.13
CCDC88B-204ENST00000463837 LINC01551Q86U37 167 aa15.85■□□□□ 0.13
CCDC88B-204ENST00000463837 ZNF418Q8TF45 676 aaPredicted RBP15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms