RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 CHRDL1Q9BU40 450 aa14.17□□□□□ -0.14
USP39-209ENST00000458268 NDUFA13Q9P0J0 144 aa14.17□□□□□ -0.14
USP39-209ENST00000458268 CEBPZOSA8MTT3 80 aa14.16□□□□□ -0.14
USP39-209ENST00000458268 LGALS9O00182 355 aa14.16□□□□□ -0.14
USP39-209ENST00000458268 ANXA3P12429 323 aa14.16□□□□□ -0.14
USP39-209ENST00000458268 TMEM187Q14656 261 aa14.16□□□□□ -0.14
USP39-209ENST00000458268 FAM219AQ8IW50 185 aa14.16□□□□□ -0.14
USP39-209ENST00000458268 UXS1Q8NBZ7 420 aa14.16□□□□□ -0.14
USP39-209ENST00000458268 BSCL2Q96G97 398 aaPredicted RBP14.16□□□□□ -0.14
USP39-209ENST00000458268 PALMDQ9NP74 551 aa14.16□□□□□ -0.14
USP39-209ENST00000458268 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.16□□□□□ -0.14
USP39-209ENST00000458268 TMEM213A2RRL7 107 aa14.15□□□□□ -0.14
USP39-209ENST00000458268 YIF1AO95070 293 aa14.15□□□□□ -0.14
USP39-209ENST00000458268 FRMD6-AS1P0C7T7 363 aa14.15□□□□□ -0.14
USP39-209ENST00000458268 CBLN1P23435 193 aa14.15□□□□□ -0.14
USP39-209ENST00000458268 CCR6P51684 374 aa14.15□□□□□ -0.14
USP39-209ENST00000458268 MFAP4P55083 255 aa14.15□□□□□ -0.14
USP39-209ENST00000458268 BAK1Q16611 211 aa14.15□□□□□ -0.14
USP39-209ENST00000458268 BTNL8Q6UX41 500 aa14.15□□□□□ -0.14
USP39-209ENST00000458268 WDR89Q96FK6 387 aaPredicted RBP14.15□□□□□ -0.14
USP39-209ENST00000458268 HEYLQ9NQ87 328 aaPredicted RBP14.15□□□□□ -0.14
USP39-209ENST00000458268 SIGLEC8Q9NYZ4 499 aa14.15□□□□□ -0.14
USP39-209ENST00000458268 UFC1Q9Y3C8 167 aa14.15□□□□□ -0.14
USP39-209ENST00000458268 GNG7O60262 68 aa14.14□□□□□ -0.15
USP39-209ENST00000458268 SCAF4O95104 1147 aaKnown RBP14.14□□□□□ -0.15
USP39-209ENST00000458268 SUB1P53999 127 aaKnown RBP eCLIP14.14□□□□□ -0.15
USP39-209ENST00000458268 CD81P60033 236 aa14.14□□□□□ -0.15
USP39-209ENST00000458268 SUPT4H1P63272 117 aaKnown RBP14.14□□□□□ -0.15
USP39-209ENST00000458268 DEFB114Q30KQ6 69 aa14.14□□□□□ -0.15
USP39-209ENST00000458268 LYZL2Q7Z4W2 148 aa14.14□□□□□ -0.15
USP39-209ENST00000458268 LGI3Q8N145 548 aa14.14□□□□□ -0.15
USP39-209ENST00000458268 ZNF114Q8NC26 417 aa14.14□□□□□ -0.15
USP39-209ENST00000458268 TMEM56-RWDD3S4R434 201 aa14.14□□□□□ -0.15
USP39-209ENST00000458268 A8MWP6 167 aa14.13□□□□□ -0.15
USP39-209ENST00000458268 I3L2K1 104 aa14.13□□□□□ -0.15
USP39-209ENST00000458268 NUPL2O15504 423 aaKnown RBP14.13□□□□□ -0.15
USP39-209ENST00000458268 SULT1A3P0DMM9 295 aa14.13□□□□□ -0.15
USP39-209ENST00000458268 SULT1A4P0DMN0 295 aa14.13□□□□□ -0.15
USP39-209ENST00000458268 IGHV4-30-4P0DP06 118 aa14.13□□□□□ -0.15
USP39-209ENST00000458268 RNASE2P10153 161 aaKnown RBP14.13□□□□□ -0.15
USP39-209ENST00000458268 SPCS3P61009 180 aa14.13□□□□□ -0.15
USP39-209ENST00000458268 SPSB3Q6PJ21 355 aa14.13□□□□□ -0.15
USP39-209ENST00000458268 GALNT14Q96FL9 552 aa14.13□□□□□ -0.15
USP39-209ENST00000458268 TUBA4BQ9H853 241 aa14.13□□□□□ -0.15
USP39-209ENST00000458268 MLXQ9UH92 298 aa14.13□□□□□ -0.15
USP39-209ENST00000458268 F8W735 103 aaPredicted RBP14.12□□□□□ -0.15
USP39-209ENST00000458268 ADMP35318 185 aa14.12□□□□□ -0.15
USP39-209ENST00000458268 OPRK1P41145 380 aa14.12□□□□□ -0.15
USP39-209ENST00000458268 Q8N1Y9 231 aa14.12□□□□□ -0.15
USP39-209ENST00000458268 CENPSQ8N2Z9 138 aa14.12□□□□□ -0.15
USP39-209ENST00000458268 OR2K2Q8NGT1 345 aa14.12□□□□□ -0.15
USP39-209ENST00000458268 OR1S1Q8NH92 325 aa14.12□□□□□ -0.15
USP39-209ENST00000458268 TMEM190Q8WZ59 177 aa14.12□□□□□ -0.15
USP39-209ENST00000458268 TECRQ9NZ01 308 aaKnown RBP14.12□□□□□ -0.15
USP39-209ENST00000458268 IGHV3-49A0A0A0MS15 119 aa14.11□□□□□ -0.15
USP39-209ENST00000458268 SRPXP78539 464 aa14.11□□□□□ -0.15
USP39-209ENST00000458268 SBSPONQ8IVN8 264 aa14.11□□□□□ -0.15
USP39-209ENST00000458268 TMEM61Q8N0U2 210 aa14.11□□□□□ -0.15
USP39-209ENST00000458268 DUSP18Q8NEJ0 188 aa14.11□□□□□ -0.15
USP39-209ENST00000458268 IL22RA2Q969J5 263 aa14.11□□□□□ -0.15
USP39-209ENST00000458268 SLC25A21Q9BQT8 299 aaPredicted RBP14.11□□□□□ -0.15
USP39-209ENST00000458268 ZNF436Q9C0F3 470 aaPredicted RBP14.11□□□□□ -0.15
USP39-209ENST00000458268 GAR1Q9NY12 217 aaKnown RBP14.11□□□□□ -0.15
USP39-209ENST00000458268 A0A0B4J2A0 478 aa14.1□□□□□ -0.15
USP39-209ENST00000458268 NDUFA4O00483 81 aa14.1□□□□□ -0.15
USP39-209ENST00000458268 CTSGP08311 255 aa14.1□□□□□ -0.15
USP39-209ENST00000458268 CD7P09564 240 aa14.1□□□□□ -0.15
USP39-209ENST00000458268 RELQ04864 619 aaPredicted RBP14.1□□□□□ -0.15
USP39-209ENST00000458268 PPP1R1AQ13522 171 aa14.1□□□□□ -0.15
USP39-209ENST00000458268 RBMS2Q15434 407 aaKnown RBP14.1□□□□□ -0.15
USP39-209ENST00000458268 TMEM128Q5BJH2 165 aa14.1□□□□□ -0.15
USP39-209ENST00000458268 RBPMS2Q6ZRY4 209 aaKnown RBP14.1□□□□□ -0.15
USP39-209ENST00000458268 NEURL2Q9BR09 285 aa14.1□□□□□ -0.15
USP39-209ENST00000458268 WFDC10AQ9H1F0 79 aa14.1□□□□□ -0.15
USP39-209ENST00000458268 SHPKQ9UHJ6 478 aa14.1□□□□□ -0.15
USP39-209ENST00000458268 ZNF785A8K8V0 405 aa14.09□□□□□ -0.15
USP39-209ENST00000458268 CENPXA8MT69 81 aa14.09□□□□□ -0.15
USP39-209ENST00000458268 NHLRC4P0CG21 123 aaPredicted RBP14.09□□□□□ -0.15
USP39-209ENST00000458268 IL7P13232 177 aa14.09□□□□□ -0.15
USP39-209ENST00000458268 NPBWR1P48145 328 aa14.09□□□□□ -0.15
USP39-209ENST00000458268 SMCO1Q147U7 214 aa14.09□□□□□ -0.15
USP39-209ENST00000458268 ANKRD55Q3KP44 614 aa14.09□□□□□ -0.15
USP39-209ENST00000458268 OR52E5Q8NH55 327 aa14.09□□□□□ -0.15
USP39-209ENST00000458268 MARC2Q969Z3 335 aa14.09□□□□□ -0.15
USP39-209ENST00000458268 SDHCQ99643 169 aaPredicted RBP14.09□□□□□ -0.15
USP39-209ENST00000458268 HIPK2Q9H2X6 1198 aa14.09□□□□□ -0.15
USP39-209ENST00000458268 DAZ1Q9NQZ3 744 aaKnown RBP14.09□□□□□ -0.15
USP39-209ENST00000458268 MRPL27Q9P0M9 148 aaKnown RBP14.09□□□□□ -0.15
USP39-209ENST00000458268 FLVCR2Q9UPI3 526 aa14.09□□□□□ -0.15
USP39-209ENST00000458268 U3KQK5 164 aa14.09□□□□□ -0.15
USP39-209ENST00000458268 IGHV3OR16-13A0A075B7E8 117 aa14.08□□□□□ -0.16
USP39-209ENST00000458268 IGHV3-74A0A0B4J1X5 117 aa14.08□□□□□ -0.16
USP39-209ENST00000458268 NAP1L6A6NFF2 107 aa14.08□□□□□ -0.16
USP39-209ENST00000458268 CORTO00230 105 aa14.08□□□□□ -0.16
USP39-209ENST00000458268 HOXB5P09067 269 aa14.08□□□□□ -0.16
USP39-209ENST00000458268 HTR2BP41595 481 aa14.08□□□□□ -0.16
USP39-209ENST00000458268 MLANAQ16655 118 aa14.08□□□□□ -0.16
USP39-209ENST00000458268 SLC24A4Q8NFF2 622 aa14.08□□□□□ -0.16
USP39-209ENST00000458268 OR52B4Q8NGK2 314 aa14.08□□□□□ -0.16
USP39-209ENST00000458268 DEDD2Q8WXF8 326 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms