RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 TEX50A0A1B0GTY4 177 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 OOSP1A8MZH6 123 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 BUB1B-PAK6H3BSN5 160 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 SIAH2O43255 324 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 IGLV3-1P01715 115 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 CD55P08174 381 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 TMEM144Q7Z5S9 345 aa6.09□□□□□ -1.43
SYNE1-213ENST00000448038 GATA2P23769 480 aaPredicted RBP6.09□□□□□ -1.44
SYNE1-213ENST00000448038 GPX4P36969 197 aaPredicted RBP6.09□□□□□ -1.44
SYNE1-213ENST00000448038 C10orf55Q5SWW7 151 aa6.09□□□□□ -1.44
SYNE1-213ENST00000448038 TMEM219Q86XT9 240 aa6.09□□□□□ -1.44
SYNE1-213ENST00000448038 SRD5A3Q9H8P0 318 aa6.09□□□□□ -1.44
SYNE1-213ENST00000448038 MBNL3Q9NUK0 354 aaKnown RBP6.09□□□□□ -1.44
SYNE1-213ENST00000448038 FUT9Q9Y231 359 aa6.09□□□□□ -1.44
SYNE1-213ENST00000448038 IGHV3-66A0A0C4DH42 116 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 FAM74A7A6NL05 159 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 LINC00473A8K010 186 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 NPFFO15130 113 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 CRYBB3P26998 211 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 CYB5R2Q6BCY4 276 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 OR10W1Q8NGF6 305 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 OR4B1Q8NGF8 309 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 PRSS3P2Q8NHM4 247 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 LHFPL5Q8TAF8 219 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 HSPB7Q9UBY9 170 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 FREM1Q5H8C1 2179 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 AMY1AP04745 511 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 VDAC2P45880 294 aaPredicted RBP6.08□□□□□ -1.44
SYNE1-213ENST00000448038 LINC00205P59089 165 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 WISP2O76076 250 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 PMCHP20382 165 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 PRTN3P24158 256 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 ERVK11-1P61568 191 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 RNASEKQ6P5S7 137 aaKnown RBP6.08□□□□□ -1.44
SYNE1-213ENST00000448038 ZNF383Q8NA42 475 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 JMJD8Q96S16 334 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 TRAV20A0A0B4J274 112 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 OR2T8A6NH00 312 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 RNF223E7ERA6 249 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 H0YJW9 148 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 RHOGP84095 191 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 TMEM177Q53S58 311 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 SGK494Q96LW2 274 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 TMPRSS5Q9H3S3 457 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 LINC00527Q9UJ94 153 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 MOB4Q9Y3A3 225 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 PRSS8Q16651 343 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 LINC01356Q8N9X3 169 aa6.08□□□□□ -1.44
SYNE1-213ENST00000448038 CACNA1AO00555 2505 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 MFSD2BA6NFX1 497 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 AP4M1O00189 453 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 IGKV1-5P01602 117 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 NBEAP1P0C6P0 100 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 FABP4P15090 132 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 COX19Q49B96 90 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 DUX4L9Q6RFH8 374 aaPredicted RBP6.07□□□□□ -1.44
SYNE1-213ENST00000448038 OR52E5Q8NH55 327 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 SGMS2Q8NHU3 365 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 MALRD1Q5VYJ5 2156 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 LOC102723971A0A1B0GUV8 181 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 SHISA9B4DS77 424 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 H3BUX3 64 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 TDGF1P3P51864 188 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 CLDND2Q8NHS1 167 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 MARVELD3Q96A59 401 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 DUX5Q96PT3 197 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 IGKV1-6A0A0C4DH72 117 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 A0A1W2PRX2 142 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 TMEM189A5PLL7 270 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 A8MWL6 223 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 CFHR2P36980 270 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 CD69Q07108 199 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 IBA57Q5T440 356 aaKnown RBP6.07□□□□□ -1.44
SYNE1-213ENST00000448038 SPANXN1Q5VSR9 72 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 SEM1Q6ZVN7 128 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 RNF5Q99942 180 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 ZNF257Q9Y2Q1 563 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 TRAV3A0A0B4J244 114 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 KRTDAPP60985 99 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 ICAM4Q14773 271 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 NMSQ5H8A3 153 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 Q5PR19 223 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 GOLT1AQ6ZVE7 132 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 Q8NA96 180 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 NHLRC2Q8NBF2 726 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 ELOVL1Q9BW60 279 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 NCOR2Q9Y618 2525 aa6.07□□□□□ -1.44
SYNE1-213ENST00000448038 CSN3P07498 182 aa6.06□□□□□ -1.44
SYNE1-213ENST00000448038 MSMBP08118 114 aa6.06□□□□□ -1.44
SYNE1-213ENST00000448038 IER3P46695 156 aa6.06□□□□□ -1.44
SYNE1-213ENST00000448038 SNRPD3P62318 126 aaKnown RBP6.06□□□□□ -1.44
SYNE1-213ENST00000448038 MAPK1IP1LQ8NDC0 245 aa6.06□□□□□ -1.44
SYNE1-213ENST00000448038 TBL2Q9Y4P3 447 aaKnown RBP6.06□□□□□ -1.44
SYNE1-213ENST00000448038 SAA4P35542 130 aa6.06□□□□□ -1.44
SYNE1-213ENST00000448038 RNF212Q495C1 297 aa6.06□□□□□ -1.44
SYNE1-213ENST00000448038 BIVMQ86UB2 503 aa6.06□□□□□ -1.44
SYNE1-213ENST00000448038 ZNRD1Q9P1U0 126 aa6.06□□□□□ -1.44
SYNE1-213ENST00000448038 SEC14L6B5MCN3 397 aa6.06□□□□□ -1.44
SYNE1-213ENST00000448038 SOD3P08294 240 aa6.06□□□□□ -1.44
SYNE1-213ENST00000448038 PLA2G5P39877 138 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms